[petsc-users] Failing PETSc 3.19.2 compile using ICPC
Robert.Crockett at lamresearch.com
Robert.Crockett at lamresearch.com
Wed Jul 19 15:31:31 CDT 2023
Hello,
I am attempting to build PETSc using the 2018.5.274 Intel compiler suite on CentOS7. I get the below error messages.
See the attached for more information.
* The file petscbuild.sh is the script used to configure and build
* The file configure.log is output by PETSc
* The file log.petscbuild is the output of the config & build script.
Can you please help find a work-around?
Best,
Robert
PS. Some related links I found in searching on this issue.
The first references a related compiler bug ticket opened with Intel, though I cannot tell if it was closed or if it applied to my compiler.
https://community.intel.com/t5/Intel-C-Compiler/Default-constructor-of-variant-is-deleted/m-p/1156212?profile.language=en
https://mediatum.ub.tum.de/doc/1555265/1555265.pdf
Robert Crockett
Plasma Simulation Engineer | OCTO - Computational Products
P: 617.648.8349 M: 415.205.4567
LAM RESEARCH
4650 Cushing Pkwy, Fremont CA 94538 USA
lamresearch.com<https://www.lamresearch.com/>
[cid:image001.png at 01D9BA5D.0F372F60]
-----------------------------------------
Using C compile: /usr/local/petsc/r/bin/mpicc -o .o -c -wd1572 -Wno-unknown-pragmas -O3 -mtune=generic
mpicc -show: icc -fPIC -wd1572 -O3 -mtune=generic -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -Wl,-rpath -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi
C compiler version: icc (ICC) 18.0.5 20180823
Using C++ compile: /usr/local/petsc/r/bin/mpicxx -o .o -c -wd1572 -O3 -mtune=generic -std=c++14 -I/usr/local/share/petsc/src/include -I/usr/local/share/petsc/src/arch-linux-c-opt/include -I/usr/local/petsc/r/include
mpicxx -show: icpc -wd1572 -O3 -mtune=generic -std=c++14 -fPIC -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -lmpicxx -Wl,-rpath -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi
C++ compiler version: icpc (ICC) 18.0.5 20180823
Using Fortran compile: /usr/local/petsc/r/bin/mpif90 -o .o -c -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O3 -mtune=generic -I/usr/local/share/petsc/src/include -I/usr/local/share/petsc/src/arch-linux-c-opt/include -I/usr/local/petsc/r/include
mpif90 -show: gfortran -fPIC -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -O3 -mtune=generic -I/usr/local/petsc/r/include -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -lmpifort -Wl,-rpath -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi
Fortran compiler version: GNU Fortran (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)
-----------------------------------------
Using C/C++ linker: /usr/local/petsc/r/bin/mpicc
Using C/C++ flags: -wd1572 -Wno-unknown-pragmas -O3 -mtune=generic
Using Fortran linker: /usr/local/petsc/r/bin/mpif90
Using Fortran flags: -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O3 -mtune=generic
-----------------------------------------
Using system modules:
Using mpi.h: # 1 "/usr/local/petsc/r/include/mpi.h" 1
-----------------------------------------
Using libraries: -Wl,-rpath,/usr/local/share/petsc/src/arch-linux-c-opt/lib -L/usr/local/share/petsc/src/arch-linux-c-opt/lib -Wl,-rpath,/usr/local/petsc/r/lib -L/usr/local/petsc/r/lib -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib64 -L/opt/rh/devtoolset-7/root/usr/lib64 -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64_lin -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64_lin -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64_lin/gcc4.4 -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64_lin/gcc4.4 -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib -L/opt/rh/devtoolset-7/root/usr/lib -lpetsc -lspqr -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lscalapack -lsuperlu -lf2clapack -lf2cblas -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lmetis -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -ldl -lmpicxx -lmpi -limf -lsvml -lirng -lstdc++ -lm -lipgo -ldecimal -lcilkrts -lgcc_s -lirc -lirc_s -lrt -ldl -lmpicxx -lmpi -limf -lsvml -lirng -lstdc++ -lm -lipgo -ldecimal -lcilkrts -lgcc_s -lirc -lirc_s -ldl
------------------------------------------
Using mpiexec: /usr/local/petsc/r/bin/mpiexec
------------------------------------------
Using MAKE: /usr/bin/gmake
Default MAKEFLAGS: MAKE_NP:4 MAKE_LOAD:6.0 MAKEFLAGS: --no-print-directory -- PETSC_ARCH=arch-linux-c-opt PETSC_DIR=/usr/local/share/petsc/src
==========================================
/usr/bin/gmake --print-directory -f gmakefile -j4 -l6.0 V= libs
/opt/mambaforge/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-opt
CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostcontext.o
CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostdevice.o
CXX arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o
CXX arch-linux-c-opt/obj/sys/objects/device/interface/device.o
CXX arch-linux-c-opt/obj/sys/objects/device/interface/global_dcontext.o
CXX arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o
/usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): error: the default constructor of "Petsc::util::compressed_pair<PetscDeviceContextConstructor, Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted function
util::compressed_pair<constructor_type, allocator_type> pair_{};
^
detected during instantiation of class "Petsc::ObjectPool<T, Constructor> [with T=_p_PetscDeviceContext, Constructor=PetscDeviceContextConstructor]" at line 61 of "/usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext.cxx"
CXX arch-linux-c-opt/obj/sys/objects/device/interface/memory.o
compilation aborted for /usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext.cxx (code 2)
gmake[3]: *** [arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o] Error 2
gmake[3]: *** Waiting for unfinished jobs....
/usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): error: the default constructor of "Petsc::util::compressed_pair<PetscEventConstructor, Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted function
util::compressed_pair<constructor_type, allocator_type> pair_{};
^
detected during instantiation of class "Petsc::ObjectPool<T, Constructor> [with T=_n_PetscEvent, Constructor=PetscEventConstructor]" at line 54 of "/usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dcontext.cxx"
compilation aborted for /usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dcontext.cxx (code 2)
gmake[3]: *** [arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o] Error 2
gmake[2]: *** [libs] Error 2
**************************ERROR*************************************
Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log
Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to petsc-maint at mcs.anl.gov<mailto:petsc-maint at mcs.anl.gov>
********************************************************************
make[1]: *** [all] Error 1
make: *** [all] Error 2
*** Using PETSC_DIR=/usr/local/share/petsc/src PETSC_ARCH=arch-linux-c-opt ***
*** Installing PETSc at prefix location: /usr/local/petsc/r ***
====================================
Install complete.
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