[petsc-users] Error while building PETSc with MATLAB

[INTURU SRINIVAS 20PHD0548]

I am sharing the make.log file while building petsc-3.13.4 with Matlab.
Please find the attachment and do the needful.

On Tue, Aug 29, 2023 at 10:19 AM INTURU SRINIVAS 20PHD0548 <
inturu.srinivas2020 at vitstudent.ac.in> wrote:

> I tried with petsc-3.17.5. During building of libmesh, the error shows
> petsc was not found
>
> On Mon, Aug 28, 2023 at 9:43 PM Satish Balay <balay at mcs.anl.gov> wrote:
>
>> https://ibamr.github.io/linux says petsc-3.17
>>
>> Here you are using 3.13
>>
>> Can you retry with petsc-3.17.5?
>>
>> Satish
>>
>> On Mon, 28 Aug 2023, INTURU SRINIVAS 20PHD0548 via petsc-users wrote:
>>
>> > Hello,
>> >
>> > I want to build PETSc with MATLAB for working on the simulation using
>> IBAMR
>> > open software. While building the PETSc, using the following
>> >
>> > export PETSC_DIR=$PWD
>> > export PETSC_ARCH=linux-debug
>> > ./configure \
>> >   --CC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicc \
>> >   --CXX=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicxx \
>> >   --FC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpif90 \
>> >   --with-debugging=1 \
>> >   --download-hypre=1 \
>> >   --download-fblaslapack=1 \
>> >   --with-x=0 \
>> >   --with-matlab-dir=/usr/local/MATLAB/R2020b/
>> >   --with-matlab-engine=1
>> >   --with-matlab-engine-dir=/usr/local/MATLAB/R2020b/extern/engines/
>> >
>> > make -j4
>> > make -j4 test
>> >
>> > I got the following error
>> > CLINKER
>> linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test
>> > /usr/bin/ld:
>> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
>> > function `EvaluateResidual':
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:32:
>> > undefined reference to `PetscMatlabEnginePut'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:33:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:35:
>> > undefined reference to `PetscMatlabEngineGet'
>> > /usr/bin/ld:
>> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
>> > function `EvaluateJacobian':
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:46:
>> > undefined reference to `PetscMatlabEnginePut'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:47:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:49:
>> > undefined reference to `PetscMatlabEngineGet'
>> > /usr/bin/ld:
>> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
>> > function `TaoPounders':
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:75:
>> > undefined reference to `PetscMatlabEngineGet'
>> > /usr/bin/ld:
>> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
>> > function `main':
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:126:
>> > undefined reference to `PetscMatlabEngineCreate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:127:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:139:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:140:
>> > undefined reference to `PetscMatlabEngineGetArray'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:142:
>> > undefined reference to `PetscMatlabEngineGetArray'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:144:
>> > undefined reference to `PetscMatlabEngineGetArray'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:146:
>> > undefined reference to `PetscMatlabEngineGetArray'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:148:
>> > undefined reference to `PetscMatlabEngineGetArray'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:154:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:157:
>> > undefined reference to `PetscMatlabEngineEvaluate'
>> > /usr/bin/ld:
>> >
>> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:158:
>> > undefined reference to `PetscMatlabEngineDestroy'
>> >
>> > collect2: error: ld returned 1 exit status
>> > make: *** [gmakefile.test:185:
>> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test]
>> Error 1
>> > make: *** Waiting for unfinished jobs....
>> >
>> > Please help me to solve this issue
>> >
>> > Thank you
>> > Srinivas
>> >
>> >
>>
>>

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