[petsc-users] Error while building PETSc with MATLAB

Mon Aug 28 11:21:18 CDT 2023

For the past 6 months,I am working on IBAMR without MATLAB. Now for one
application it is recommended to build PETSc with MATLAB as mentioned in
the following link https://github.com/IBAMR/cfd-mpc-wecs.

On Mon, Aug 28, 2023, 21:45 Satish Balay <balay at mcs.anl.gov> wrote:

> Also - the instructions don't say if matlab is required.
>
> So perhaps you might want to try an install without matlab - and see if
> you are able to get IBAMR working.
>
> Satish
>
> On Mon, 28 Aug 2023, Satish Balay via petsc-users wrote:
>
> > https://ibamr.github.io/linux says petsc-3.17
> >
> > Here you are using 3.13
> >
> > Can you retry with petsc-3.17.5?
> >
> > Satish
> >
> > On Mon, 28 Aug 2023, INTURU SRINIVAS 20PHD0548 via petsc-users wrote:
> >
> > > Hello,
> > >
> > > I want to build PETSc with MATLAB for working on the simulation using
> IBAMR
> > > open software. While building the PETSc, using the following
> > >
> > > export PETSC_DIR=$PWD
> > > export PETSC_ARCH=linux-debug
> > > ./configure \
> > >   --CC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicc \
> > >   --CXX=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicxx \
> > >   --FC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpif90 \
> > >   --with-debugging=1 \
> > >   --download-hypre=1 \
> > >   --download-fblaslapack=1 \
> > >   --with-x=0 \
> > >   --with-matlab-dir=/usr/local/MATLAB/R2020b/
> > >   --with-matlab-engine=1
> > >   --with-matlab-engine-dir=/usr/local/MATLAB/R2020b/extern/engines/
> > >
> > > make -j4
> > > make -j4 test
> > >
> > > I got the following error
> > > CLINKER
> linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test
> > > /usr/bin/ld:
> > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o:
> in
> > > function `EvaluateResidual':
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:32:
> > > undefined reference to `PetscMatlabEnginePut'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:33:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:35:
> > > undefined reference to `PetscMatlabEngineGet'
> > > /usr/bin/ld:
> > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o:
> in
> > > function `EvaluateJacobian':
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:46:
> > > undefined reference to `PetscMatlabEnginePut'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:47:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:49:
> > > undefined reference to `PetscMatlabEngineGet'
> > > /usr/bin/ld:
> > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o:
> in
> > > function `TaoPounders':
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:75:
> > > undefined reference to `PetscMatlabEngineGet'
> > > /usr/bin/ld:
> > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o:
> in
> > > function `main':
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:126:
> > > undefined reference to `PetscMatlabEngineCreate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:127:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:139:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:140:
> > > undefined reference to `PetscMatlabEngineGetArray'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:142:
> > > undefined reference to `PetscMatlabEngineGetArray'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:144:
> > > undefined reference to `PetscMatlabEngineGetArray'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:146:
> > > undefined reference to `PetscMatlabEngineGetArray'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:148:
> > > undefined reference to `PetscMatlabEngineGetArray'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:154:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:157:
> > > undefined reference to `PetscMatlabEngineEvaluate'
> > > /usr/bin/ld:
> > >
> /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:158:
> > > undefined reference to `PetscMatlabEngineDestroy'
> > >
> > > collect2: error: ld returned 1 exit status
> > > make: *** [gmakefile.test:185:
> > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test]
> Error 1
> > > make: *** Waiting for unfinished jobs....
> > >
> > > Please help me to solve this issue
> > >
> > > Thank you
> > > Srinivas
> > >
> > >
> >
>
>

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