[petsc-users] PETSc Windows Installation
Matthew Knepley
knepley at gmail.com
Mon Oct 31 22:15:38 CDT 2022
It is in the directory you executed configure in.
Thanks,
Matt
On Mon, Oct 31, 2022 at 10:41 PM Mohammad Ali Yaqteen <mhyaqteen at sju.ac.kr>
wrote:
> From where can I get that?
>
> Ali
>
> -----Original Message-----
> From: Satish Balay <balay at mcs.anl.gov>
> Sent: Tuesday, November 1, 2022 11:36 AM
> To: Mohammad Ali Yaqteen <mhyaqteen at sju.ac.kr>
> Cc: petsc-users <petsc-users at mcs.anl.gov>
> Subject: RE: [petsc-users] PETSc Windows Installation
>
> you'll have to send configure.log for this failure
>
> Satish
>
>
> On Tue, 1 Nov 2022, Mohammad Ali Yaqteen wrote:
>
> > I have checked the required Cygwin openmpi libraries and they are all
> installed. When I run ./configure --with-cc=mpicc --with-cxx=mpicxx
> --with-fc=mpif90, it returns:
> >
> > $ ./configure --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90
> >
> =============================================================================================
> > Configuring PETSc to compile on your system
> > ======================================================================
> > =======================
> > TESTING: checkCCompiler from
> config.setCompilers(config/BuildSystem/config/setCompilers.py:1341)*******************************************************************************
> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> for details):
> > ----------------------------------------------------------------------
> > --------- C compiler you provided with -with-cc=mpicc cannot be found
> > or does not work.
> > Cannot compile/link C with mpicc.
> >
> > As for the case of WSL2, I will try to install that on my PC.
> > Meanwhile, could you please look into this issue
> >
> > Thank you
> >
> > Ali
> >
> > -----Original Message-----
> > From: Satish Balay <balay at mcs.anl.gov>
> > Sent: Monday, October 31, 2022 10:56 PM
> > To: Satish Balay via petsc-users <petsc-users at mcs.anl.gov>
> > Cc: Matthew Knepley <knepley at gmail.com>; Mohammad Ali Yaqteen
> > <mhyaqteen at sju.ac.kr>
> > Subject: Re: [petsc-users] PETSc Windows Installation
> >
> > BTW: If you have WSL2 on windows - it might be easier to build/use PETSc.
> >
> > Satish
> >
> > On Mon, 31 Oct 2022, Satish Balay via petsc-users wrote:
> >
> > > Make sure you have cygwin openmpi installed [and cywin blas/lapack]
> > >
> > > $ cygcheck -cd |grep openmpi
> > > libopenmpi-devel 4.1.2-1
> > > libopenmpi40 4.1.2-1
> > > libopenmpifh40 4.1.2-1
> > > libopenmpiusef08_40 4.1.2-1
> > > libopenmpiusetkr40 4.1.2-1
> > > openmpi 4.1.2-1
> > > $ cygcheck -cd |grep lapack
> > > liblapack-devel 3.10.1-1
> > > liblapack0 3.10.1-1
> > >
> > >
> > > > ./configure --with-cc=gcc --with-cxx=0 --with-fc=0
> > > > --download-f2cblaslapack
> > >
> > > Should be:
> > >
> > > > > $ ./configure --download-scalapack --download-mumps
> > >
> > > i.e [default] --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 [an
> > > default cygwin blas/lapack]
> > >
> > > Satish
> > >
> > >
> > > On Mon, 31 Oct 2022, Matthew Knepley wrote:
> > >
> > > > On Mon, Oct 31, 2022 at 1:56 AM Mohammad Ali Yaqteen
> > > > <mhyaqteen at sju.ac.kr>
> > > > wrote:
> > > >
> > > > > Dear Satish
> > > > >
> > > > > When I configure PETSc with (./configure --with-cc=gcc
> > > > > --with-cxx=0
> > > > > --with-fc=0 --download-f2cblaslapack) it runs as I shared
> > > > > initially which you said is not an issue anymore. But when I add
> > > > > (--download-scalapack
> > > > > --download-mumps) or configure with these later, it gives the
> > > > > following
> > > > > error:
> > > > >
> > > > > $ ./configure --download-scalapack --download-mumps
> > > > >
> > > > >
> =============================================================================================
> > > > > Configuring PETSc to compile on your
> > > > > system
> > > > >
> > > > > ================================================================
> > > > > ==
> > > > > ===========================
> > > > > TESTING: FortranMPICheck from
> > > > >
> config.packages.MPI(config/BuildSystem/config/packages/MPI.py:614)*******************************************************************************
> > > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see
> configure.log for
> > > > > details):
> > > > >
> > > > > ----------------------------------------------------------------
> > > > > --
> > > > > ------------- Fortran error! mpi_init() could not be located!
> > > > >
> > > > > ****************************************************************
> > > > > **
> > > > > *************
> > > > >
> > > > > What could be the problem here?
> > > > >
> > > >
> > > > Without configure.log we cannot tell what went wrong. However,
> > > > from the error message, I would guess that your MPI was not built
> > > > with Fortran bindings. You need these for those packages.
> > > >
> > > > Thanks,
> > > >
> > > > Matt
> > > >
> > > >
> > > > > Your help is highly appreciated.
> > > > >
> > > > > Thank you
> > > > > Ali
> > > > >
> > > > > -----Original Message-----
> > > > > From: Satish Balay <balay at mcs.anl.gov>
> > > > > Sent: Saturday, October 29, 2022 2:11 PM
> > > > > To: Mohammad Ali Yaqteen <mhyaqteen at sju.ac.kr>
> > > > > Cc: Matthew Knepley <knepley at gmail.com>; petsc-users at mcs.anl.gov
> > > > > Subject: Re: [petsc-users] PETSc Windows Installation
> > > > >
> > > > > On Sat, 29 Oct 2022, Mohammad Ali Yaqteen wrote:
> > > > >
> > > > > > I haven’t accessed PETSC or given any command of my own. I was
> > > > > > just
> > > > > installing by following the instructions. I don’t know why it is
> > > > > attaching the debugger. Although it says “Possible error running
> > > > > C/C++
> > > > > src/snes/tutorials/ex19 with 1 MPI process” which I think is
> > > > > indicating of missing of MPI!
> > > > >
> > > > > The diff is not smart enough to detect the extra message from
> > > > > cygwin/OpenMPI - hence it assumes there is a potential problem -
> > > > > and prints the above message.
> > > > >
> > > > > But you can assume its installed properly - and use it.
> > > > >
> > > > > Satish
> > > > > >
> > > > > > From: Matthew Knepley <knepley at gmail.com>
> > > > > > Sent: Friday, October 28, 2022 10:31 PM
> > > > > > To: Mohammad Ali Yaqteen <mhyaqteen at sju.ac.kr>
> > > > > > Cc: petsc-users at mcs.anl.gov
> > > > > > Subject: Re: [petsc-users] PETSc Windows Installation
> > > > > >
> > > > > > On Fri, Oct 28, 2022 at 9:11 AM Mohammad Ali Yaqteen <
> > > > > mhyaqteen at sju.ac.kr<mailto:mhyaqteen at sju.ac.kr>> wrote:
> > > > > > Dear Sir,
> > > > > >
> > > > > > During the Installation of PETSc in windows, I installed
> > > > > > Cygwin and the
> > > > > required libraries as mentioned on your website:
> > > > > > [cid:image001.png at 01D8EB93.7C17E410]
> > > > > > However, when I install PETSc using the configure commands
> > > > > > present on
> > > > > the petsc website:
> > > > > >
> > > > > > ./configure --with-cc=gcc --with-cxx=0 --with-fc=0
> > > > > --download-f2cblaslapack --download-mpich
> > > > > >
> > > > > > it gives me the following error:
> > > > > >
> > > > > > [cid:image002.png at 01D8EB93.7C17E410]
> > > > > >
> > > > > > I already installed OpenMPI using Cygwin installer but it
> > > > > > still asks me
> > > > > to. When I configure without “—download-mpich” and run “make check”
> > > > > command, it gives me the following errors:
> > > > > >
> > > > > > [cid:image003.png at 01D8EB93.7C17E410]
> > > > > >
> > > > > > Could you kindly look into this and help me with this? Your
> > > > > > prompt
> > > > > response will highly be appreciated.
> > > > > >
> > > > > > The runs look fine.
> > > > > >
> > > > > > The test should not try to attach the debugger. Do you have
> > > > > > that in the
> > > > > PETSC_OPTIONS env variable?
> > > > > >
> > > > > > Thanks,
> > > > > >
> > > > > > Matt
> > > > > >
> > > > > > Thank you!
> > > > > > Mohammad Ali
> > > > > > Researcher, Sejong University
> > > > > >
> > > > > >
> > > > > > --
> > > > > > What most experimenters take for granted before they begin
> > > > > > their
> > > > > experiments is infinitely more interesting than any results to
> > > > > which their experiments lead.
> > > > > > -- Norbert Wiener
> > > > > >
> > > > > > https://www.cse.buffalo.edu/~knepley/<
> > > > > http://www.cse.buffalo.edu/~knepley/>
> > > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> >
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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