[petsc-users] Make check 3.17.3
san.temporal at gmail.com
san.temporal at gmail.com
Thu Jul 21 08:37:32 CDT 2022
I am compiling, installing and checking 3.17.3, as posted below, following
the usual instructions after each step.
I am getting an error with check.
Is there anything to do about this?
Should I be concerned?
Thanks
$ ./configure --with-cc=mpicc -with-cxx=mpicxx --with-fc=mpif90
--prefix=/home/user1/usr/local --with-make-np=10 --with-shared-libraries
--with-debugging=0 COPTFLAGS="-O -O3 -march=native -mtune=native"
FOPTFLAGS="-O -O3 -march=native -mtune=native" CXXOPTFLAGS="-O -O3
-march=native -mtune=native" --force
PETSC_DIR=/home/user1/Documents/installers/petsc/petsc-3.17.3
PETSC_ARCH=linux-gnu-cxx-opt
--download-fblaslapack=/home/user1/Documents/installers/petsc/v3.4.2-p3.tar.gz
--download-scalapack=/home/user1/Documents/installers/petsc/scalapack-5bad7487f496c811192334640ce4d3fc5f88144b.tar.gz
--download-mumps=/home/user1/Documents/installers/petsc/v5.4.1-p1.tar.gz
$ make PETSC_DIR=/home/user1/Documents/installers/petsc/petsc-3.17.3
PETSC_ARCH=linux-gnu-cxx-opt all
$ make PETSC_DIR=/home/user1/Documents/installers/petsc/petsc-3.17.3
PETSC_ARCH=linux-gnu-cxx-opt install
$ make PETSC_DIR=/home/user1/usr/local PETSC_ARCH="" check
Running check examples to verify correct installation
Using PETSC_DIR=/home/user1/usr/local and PETSC_ARCH=
Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process
See https://petsc.org/release/faq/
hwloc/linux: Ignoring PCI device with non-16bit domain.
Pass --enable-32bits-pci-domain to configure to support such devices
(warning: it would break the library ABI, don't enable unless really
needed).
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI
processes
See https://petsc.org/release/faq/
hwloc/linux: Ignoring PCI device with non-16bit domain.
Pass --enable-32bits-pci-domain to configure to support such devices
(warning: it would break the library ABI, don't enable unless really
needed).
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
0a1,3
> hwloc/linux: Ignoring PCI device with non-16bit domain.
> Pass --enable-32bits-pci-domain to configure to support such devices
> (warning: it would break the library ABI, don't enable unless really
needed).
/home/user1/Documents/installers/petsc/petsc-3.17.3/src/snes/tutorials
Possible problem with ex19 running with mumps, diffs above
=========================================
Possible error running Fortran example src/snes/tutorials/ex5f with 1
MPI process
See https://petsc.org/release/faq/
hwloc/linux: Ignoring PCI device with non-16bit domain.
Pass --enable-32bits-pci-domain to configure to support such devices
(warning: it would break the library ABI, don't enable unless really
needed).
Number of SNES iterations = 4
Completed test examples
When I did the same some time ago, with 3.13.0 and in a similar system, I
got different errors...
$ make PETSC_DIR=/home/user1/usr/local PETSC_ARCH="" check
Running check examples to verify correct installation
Using PETSC_DIR=/home/user1/usr/local and PETSC_ARCH=
Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
[mpiexec at server1] match_arg (utils/args/args.c:160): unrecognized
argument oversubscribe
[mpiexec at server1] HYDU_parse_array (utils/args/args.c:175): argument
matching returned error
[mpiexec at server1] parse_args (ui/mpich/utils.c:1603): error parsing
input array
[mpiexec at server1] HYD_uii_mpx_get_parameters (ui/mpich/utils.c:1655):
unable to parse user arguments
[mpiexec at server1] main (ui/mpich/mpiexec.c:128): error parsing
parameters
Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI
processes
See http://www.mcs.anl.gov/petsc/documentation/faq.html
[mpiexec at server1] match_arg (utils/args/args.c:160): unrecognized
argument oversubscribe
[mpiexec at server1] HYDU_parse_array (utils/args/args.c:175): argument
matching returned error
[mpiexec at server1] parse_args (ui/mpich/utils.c:1603): error parsing
input array
[mpiexec at server1] HYD_uii_mpx_get_parameters (ui/mpich/utils.c:1655):
unable to parse user arguments
[mpiexec at server1] main (ui/mpich/mpiexec.c:128): error parsing
parameters
1,9c1,5
< lid velocity = 0.0625, prandtl # = 1., grashof # = 1.
< 0 SNES Function norm 0.239155
< 0 KSP Residual norm 0.239155
< 1 KSP Residual norm < 1.e-11
< 1 SNES Function norm 6.81968e-05
< 0 KSP Residual norm 6.81968e-05
< 1 KSP Residual norm < 1.e-11
< 2 SNES Function norm < 1.e-11
< Number of SNES iterations = 2
---
> [mpiexec at server1] match_arg (utils/args/args.c:160): unrecognized
argument oversubscribe
> [mpiexec at server1] HYDU_parse_array (utils/args/args.c:175): argument
matching returned error
> [mpiexec at server1] parse_args (ui/mpich/utils.c:1603): error parsing
input array
> [mpiexec at server1] HYD_uii_mpx_get_parameters (ui/mpich/utils.c:1655):
unable to parse user arguments
> [mpiexec at server1] main (ui/mpich/mpiexec.c:128): error parsing
parameters
/home/user1/Documents/installers/petsc/petsc-3.13.0/src/snes/tutorials
Possible problem with ex19 running with mumps, diffs above
=========================================
Possible error running Fortran example src/snes/tutorials/ex5f with 1
MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
[mpiexec at server1] match_arg (utils/args/args.c:160): unrecognized
argument oversubscribe
[mpiexec at server1] HYDU_parse_array (utils/args/args.c:175): argument
matching returned error
[mpiexec at server1] parse_args (ui/mpich/utils.c:1603): error parsing
input array
[mpiexec at server1] HYD_uii_mpx_get_parameters (ui/mpich/utils.c:1655):
unable to parse user arguments
[mpiexec at server1] main (ui/mpich/mpiexec.c:128): error parsing
parameters
Completed test examples
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