Mark, Matthew and Barry,
Thank you all for the quick responses.
Others might have a better idea, but you could run with '-info :ksp' and
see if you see any messages like "Linear solver has created a not a number
(NaN) as the residual norm, declaring divergence \n"
You could also run with -log_trace and see if it is
using KSPConvergedDefault. I'm not sure if this is the method used given
your parameters, but I think it is.
Mark, I ran with both options. I didn't get any messages like "linear
solver has created a not a number..." when using -info: ksp. When turning
on -log_trace, I could verify that it is using KSPConvergedDefault but what
does it mean exactly? When FGMRES converges with the true residual being
NaN, I get the following message: [0] KSPConvergedDefault(): Linear solver
has converged. Residual norm 8.897908325511e-05 is less than relative
tolerance 1.000000000000e-08 times initial right hand side norm
1.466597558465e+04 at iteration 53. No information about NaN whatsoever.
We check for NaN or Inf, for example, in KSPCheckDot(). if you have the KSP
set to error (
https://petsc.org/main/docs/manualpages/KSP/KSPSetErrorIfNotConverged.html)
then we throw an error, but the return codes do not seem to be checked in
your implementation. If not, then we set the flag for divergence.
Matthew, I do not check the return code in this case because I don't want
PETSc to stop if an error occurs during the solving step. I just want to
know that it didn't converge and treat this error inside my code. The
problem is that the flag for divergence is not always being set when FGMRES
is not converging. I was just wondering why it was set during time step 921
and why not for time step 922 as well.
Thanks for the complete report. It looks like we may be missing a check in
our FGMRES implementation that allows the iteration to continue after a
NaN/Inf.
I will explain how we handle the checking and then attach a patch that
you can apply to see if it resolves the problem. Whenever our KSP solvers
compute a norm we
check after that calculation to verify that the norm is not an Inf or Nan.
This is an inexpensive global check across all MPI ranks because
immediately after the norm computation all ranks that share the KSP have
the same value. If the norm is a Inf or Nan we "short-circuit" the KSP
solve and return immediately with an appropriate not converged code. A
quick eye-ball inspection of the FGMRES code found a missing check.
You can apply the attached patch file in the PETSC_DIR with
patch -p1 < fgmres.patch
make libs
then rerun your code and see if it now handles the Inf/NaN correctly. If so
we'll patch our release branch with the fix.
Thank you for checking this, Barry. I applied the patch exactly the way you
instructed, however, the problem is still happening. Is there a way to
check if the patch was in fact applied? You can see in the attached
screenshot the terminal information.
Kind regards,
Giovane
Em sex., 25 de fev. de 2022 às 13:48, Barry Smith <bsmith at petsc.dev>
escreveu:
>
> Giovane,
>
> Thanks for the complete report. It looks like we may be missing a
> check in our FGMRES implementation that allows the iteration to continue
> after a NaN/Inf.
>
> I will explain how we handle the checking and then attach a patch that
> you can apply to see if it resolves the problem. Whenever our KSP solvers
> compute a norm we
> check after that calculation to verify that the norm is not an Inf or Nan.
> This is an inexpensive global check across all MPI ranks because
> immediately after the norm computation all ranks that share the KSP have
> the same value. If the norm is a Inf or Nan we "short-circuit" the KSP
> solve and return immediately with an appropriate not converged code. A
> quick eye-ball inspection of the FGMRES code found a missing check.
>
> You can apply the attached patch file in the PETSC_DIR with
>
> patch -p1 < fgmres.patch
> make libs
>
> then rerun your code and see if it now handles the Inf/NaN correctly. If
> so we'll patch our release branch with the fix.
>
> Barry
>
>
>
> Giovane
>
>
>
> On Feb 25, 2022, at 11:06 AM, Giovane Avancini via petsc-users <
> petsc-users at mcs.anl.gov> wrote:
>
> Dear PETSc users,
>
> I'm working on an inhouse code that solves the Navier-Stokes equation in a
> Lagrangian fashion for free surface flows. Because of the large distortions
> and pressure gradients, it is quite common to encounter some issues with
> iterative solvers for some time steps, and because of that, I implemented a
> function that changes the solver type based on the flag KSPConvergedReason.
> If this flag is negative after a call to KSPSolve, I solve the same linear
> system again using a direct method.
>
> The problem is that, sometimes, KSP keeps converging even though the
> residual is NaN, and because of that, I'm not able to identify the problem
> and change the solver, which leads to a solution vector equals to INF and
> obviously the code ends up crashing. Is it normal to observe this kind of
> behaviour?
>
> Please find attached the log produced with the options
> -ksp_monitor_lg_residualnorm -ksp_log -ksp_view -ksp_monitor_true_residual
> -ksp_converged_reason and the function that changes the solver. I'm
> currently using FGMRES and BJACOBI preconditioner with LU for each block.
> The problem still happens with ILU for example. We can see in the log file
> that for the time step 921, the true residual is NaN and within just one
> iteration, the solver fails and it gives the reason DIVERGED_PC_FAILED. I
> simply changed the solver to MUMPS and it converged for that time step.
> However, when solving time step 922 we can see that FGMRES converges while
> the true residual is NaN. Why is that possible? I would appreciate it if
> someone could clarify this issue to me.
>
> Kind regards,
> Giovane
>
>
>
> --
> Giovane Avancini
> Doutorando em Engenharia de Estruturas - Escola de Engenharia de São
> Carlos, USP
>
> PhD researcher in Structural Engineering - School of Engineering of São
> Carlos. USP
> <function.txt><log.txt>
>
>
>
--
Giovane Avancini
Doutorando em Engenharia de Estruturas - Escola de Engenharia de São
Carlos, USP
PhD researcher in Structural Engineering - School of Engineering of São
Carlos. USP
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----------------------- TIME STEP = 922, time = 0.184400 -----------------------
Mesh Regenerated. Elapsed time: 0.010348
Isolated nodes: 1
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Assemble Linear System. Elapsed time: 0.015676
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[0] 8412.38 Event begin: KSPSetUp
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MatNorm: 3.04642e+06 VecNorm: 1305.09
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0 KSP unpreconditioned resid norm 1.466597558465e+04 true resid norm -nan ||r(i)||/||b|| -nan
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1 KSP unpreconditioned resid norm 3.992657613675e+02 true resid norm -nan ||r(i)||/||b|| -nan
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2 KSP unpreconditioned resid norm 6.865492930488e+01 true resid norm -nan ||r(i)||/||b|| -nan
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3 KSP unpreconditioned resid norm 1.488490448911e+01 true resid norm -nan ||r(i)||/||b|| -nan
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4 KSP unpreconditioned resid norm 6.459160528255e+00 true resid norm -nan ||r(i)||/||b|| -nan
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5 KSP unpreconditioned resid norm 2.684190657710e+00 true resid norm -nan ||r(i)||/||b|| -nan
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6 KSP unpreconditioned resid norm 1.583730558621e+00 true resid norm -nan ||r(i)||/||b|| -nan
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7 KSP unpreconditioned resid norm 7.857636390655e-01 true resid norm -nan ||r(i)||/||b|| -nan
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8 KSP unpreconditioned resid norm 5.609287018950e-01 true resid norm -nan ||r(i)||/||b|| -nan
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9 KSP unpreconditioned resid norm 4.240869626332e-01 true resid norm -nan ||r(i)||/||b|| -nan
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[0] 8413.78 Event begin: VecCopy
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[0] 8413.78 Event begin: VecNorm
[0] 8413.78 Event end: VecNorm
10 KSP unpreconditioned resid norm 3.545861066058e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.78 Event begin: PCApply
[0] 8413.78 Event begin: VecSet
[0] 8413.78 Event end: VecSet
[0] 8413.78 Event begin: MatSolve
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[0] 8413.78 Event end: PCApply
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[0] 8413.78 Event end: VecScatterBegin
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[0] 8413.78 Event end: MatMult
[0] 8413.78 Event begin: VecMDot
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[0] 8413.78 Event begin: VecMAXPY
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[0] 8413.78 Event begin: VecMAXPY
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[0] 8413.78 Event begin: VecCopy
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[0] 8413.78 Event begin: VecAXPY
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11 KSP unpreconditioned resid norm 2.796829035763e-01 true resid norm -nan ||r(i)||/||b|| -nan
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[0] 8413.78 Event end: VecSet
[0] 8413.78 Event begin: MatSolve
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[0] 8413.78 Event end: PCApply
[0] 8413.78 Event begin: MatMult
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[0] 8413.78 Event end: VecScatterBegin
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[0] 8413.78 Event end: MatMult
[0] 8413.78 Event begin: VecMDot
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[0] 8413.78 Event begin: VecMAXPY
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[0] 8413.78 Event begin: VecMAXPY
[0] 8413.78 Event end: VecMAXPY
[0] 8413.78 Event begin: VecCopy
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[0] 8413.78 Event begin: VecAXPY
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[0] 8413.78 Event begin: SFPack
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[0] 8413.78 Event begin: VecNorm
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12 KSP unpreconditioned resid norm 2.415853009738e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.78 Event begin: PCApply
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[0] 8413.78 Event end: VecSet
[0] 8413.78 Event begin: MatSolve
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[0] 8413.78 Event end: PCApply
[0] 8413.78 Event begin: MatMult
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[0] 8413.78 Event begin: SFPack
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[0] 8413.78 Event end: VecScatterBegin
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[0] 8413.78 Event end: MatMult
[0] 8413.78 Event begin: VecMDot
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[0] 8413.78 Event begin: VecMAXPY
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[0] 8413.78 Event begin: VecScale
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[0] 8413.78 Event begin: VecMAXPY
[0] 8413.78 Event end: VecMAXPY
[0] 8413.78 Event begin: VecCopy
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[0] 8413.78 Event begin: VecAXPY
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[0] 8413.78 Event begin: VecAYPX
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[0] 8413.78 Event begin: VecNorm
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13 KSP unpreconditioned resid norm 1.933876548152e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.78 Event begin: PCApply
[0] 8413.78 Event begin: VecSet
[0] 8413.78 Event end: VecSet
[0] 8413.78 Event begin: MatSolve
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[0] 8413.78 Event end: PCApply
[0] 8413.78 Event begin: MatMult
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[0] 8413.78 Event begin: SFPack
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[0] 8413.78 Event end: VecScatterBegin
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[0] 8413.78 Event end: MatMult
[0] 8413.78 Event begin: VecMDot
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[0] 8413.8 Event begin: VecMAXPY
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[0] 8413.8 Event begin: VecMAXPY
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[0] 8413.81 Event begin: VecAXPY
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[0] 8413.81 Event begin: VecAYPX
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[0] 8413.81 Event end: VecNorm
14 KSP unpreconditioned resid norm 1.820288341790e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.81 Event begin: PCApply
[0] 8413.81 Event begin: VecSet
[0] 8413.81 Event end: VecSet
[0] 8413.81 Event begin: MatSolve
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[0] 8413.81 Event end: PCApply
[0] 8413.81 Event begin: MatMult
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[0] 8413.81 Event begin: SFPack
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[0] 8413.81 Event end: VecScatterBegin
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[0] 8413.81 Event end: MatMult
[0] 8413.81 Event begin: VecMDot
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[0] 8413.81 Event begin: VecMAXPY
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[0] 8413.81 Event begin: VecMAXPY
[0] 8413.81 Event end: VecMAXPY
[0] 8413.81 Event begin: VecCopy
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[0] 8413.81 Event begin: VecAXPY
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15 KSP unpreconditioned resid norm 1.657259630262e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.81 Event begin: PCApply
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16 KSP unpreconditioned resid norm 1.563463774015e-01 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.81 Event begin: PCApply
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17 KSP unpreconditioned resid norm 1.272726944551e-01 true resid norm -nan ||r(i)||/||b|| -nan
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18 KSP unpreconditioned resid norm 1.137797050714e-01 true resid norm -nan ||r(i)||/||b|| -nan
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19 KSP unpreconditioned resid norm 8.582334823227e-02 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8413.84 Event begin: PCApply
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20 KSP unpreconditioned resid norm 7.628931303919e-02 true resid norm -nan ||r(i)||/||b|| -nan
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23 KSP unpreconditioned resid norm 4.367682975355e-02 true resid norm -nan ||r(i)||/||b|| -nan
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[3] 8413.9 Event end: MatMult
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[3] 8413.9 Event begin: VecCopy
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[3] 8413.9 Event begin: PCApply
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24 KSP unpreconditioned resid norm 3.767769229151e-02 true resid norm -nan ||r(i)||/||b|| -nan
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25 KSP unpreconditioned resid norm 2.758466247011e-02 true resid norm -nan ||r(i)||/||b|| -nan
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26 KSP unpreconditioned resid norm 2.401067727732e-02 true resid norm -nan ||r(i)||/||b|| -nan
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27 KSP unpreconditioned resid norm 1.918365058572e-02 true resid norm -nan ||r(i)||/||b|| -nan
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28 KSP unpreconditioned resid norm 1.796891339145e-02 true resid norm -nan ||r(i)||/||b|| -nan
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29 KSP unpreconditioned resid norm 1.646774974855e-02 true resid norm -nan ||r(i)||/||b|| -nan
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30 KSP unpreconditioned resid norm 1.581043134782e-02 true resid norm -nan ||r(i)||/||b|| -nan
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31 KSP unpreconditioned resid norm 1.451402400457e-02 true resid norm -nan ||r(i)||/||b|| -nan
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32 KSP unpreconditioned resid norm 1.365718641872e-02 true resid norm -nan ||r(i)||/||b|| -nan
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33 KSP unpreconditioned resid norm 1.221813418384e-02 true resid norm -nan ||r(i)||/||b|| -nan
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34 KSP unpreconditioned resid norm 1.170503502672e-02 true resid norm -nan ||r(i)||/||b|| -nan
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35 KSP unpreconditioned resid norm 1.112117727571e-02 true resid norm -nan ||r(i)||/||b|| -nan
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36 KSP unpreconditioned resid norm 1.041365991480e-02 true resid norm -nan ||r(i)||/||b|| -nan
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37 KSP unpreconditioned resid norm 8.898425200683e-03 true resid norm -nan ||r(i)||/||b|| -nan
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38 KSP unpreconditioned resid norm 7.828444318032e-03 true resid norm -nan ||r(i)||/||b|| -nan
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39 KSP unpreconditioned resid norm 6.804847890303e-03 true resid norm -nan ||r(i)||/||b|| -nan
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40 KSP unpreconditioned resid norm 5.932483484656e-03 true resid norm -nan ||r(i)||/||b|| -nan
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41 KSP unpreconditioned resid norm 5.038615399194e-03 true resid norm -nan ||r(i)||/||b|| -nan
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42 KSP unpreconditioned resid norm 4.351876224962e-03 true resid norm -nan ||r(i)||/||b|| -nan
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43 KSP unpreconditioned resid norm 3.340922526921e-03 true resid norm -nan ||r(i)||/||b|| -nan
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44 KSP unpreconditioned resid norm 2.489477739180e-03 true resid norm -nan ||r(i)||/||b|| -nan
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48 KSP unpreconditioned resid norm 7.073558685429e-04 true resid norm -nan ||r(i)||/||b|| -nan
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[2] 8414.11 Event begin: VecCopy
[2] 8414.11 Event end: VecCopy
[2] 8414.11 Event begin: VecNorm
[2] 8414.12 Event end: VecNorm
[2] 8414.12 Event end: KSPSolve
[2] 8414.12 Event begin: MatView
[2] 8414.12 Event end: MatView
[2] 8414.12 Event begin: KSPSetUp
[2] 8414.12 Event end: KSPSetUp
[2] 8414.12 Event begin: PCSetUp
[0] 8414.03 Event begin: VecMDot
[0] 8414.07 Event end: VecMDot
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
[0] 8414.07 Event begin: VecScale
[0] 8414.07 Event end: VecScale
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecCopy
[0] 8414.07 Event end: VecCopy
[0] 8414.07 Event begin: VecAXPY
[0] 8414.07 Event end: VecAXPY
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecAYPX
[0] 8414.07 Event end: VecAYPX
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
49 KSP unpreconditioned resid norm 4.323260656510e-04 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8414.07 Event begin: PCApply
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: MatSolve
[0] 8414.07 Event end: MatSolve
[0] 8414.07 Event end: PCApply
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecMDot
[0] 8414.07 Event end: VecMDot
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
[0] 8414.07 Event begin: VecScale
[0] 8414.07 Event end: VecScale
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecCopy
[0] 8414.07 Event end: VecCopy
[0] 8414.07 Event begin: VecAXPY
[0] 8414.07 Event end: VecAXPY
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecAYPX
[0] 8414.07 Event end: VecAYPX
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
50 KSP unpreconditioned resid norm 3.113754193220e-04 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8414.07 Event begin: PCApply
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: MatSolve
[0] 8414.07 Event end: MatSolve
[0] 8414.07 Event end: PCApply
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecMDot
[0] 8414.07 Event end: VecMDot
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
[0] 8414.07 Event begin: VecScale
[0] 8414.07 Event end: VecScale
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecCopy
[0] 8414.07 Event end: VecCopy
[0] 8414.07 Event begin: VecAXPY
[0] 8414.07 Event end: VecAXPY
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecAYPX
[0] 8414.07 Event end: VecAYPX
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
51 KSP unpreconditioned resid norm 1.976589856877e-04 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8414.07 Event begin: PCApply
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: MatSolve
[0] 8414.07 Event end: MatSolve
[0] 8414.07 Event end: PCApply
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecMDot
[0] 8414.07 Event end: VecMDot
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
[0] 8414.07 Event begin: VecScale
[0] 8414.07 Event end: VecScale
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.07 Event begin: VecCopy
[0] 8414.07 Event end: VecCopy
[0] 8414.07 Event begin: VecAXPY
[0] 8414.07 Event end: VecAXPY
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecAYPX
[0] 8414.07 Event end: VecAYPX
[0] 8414.07 Event begin: VecNorm
[0] 8414.07 Event end: VecNorm
52 KSP unpreconditioned resid norm 1.525265024153e-04 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8414.07 Event begin: PCApply
[0] 8414.07 Event begin: VecSet
[0] 8414.07 Event end: VecSet
[0] 8414.07 Event begin: MatSolve
[0] 8414.07 Event end: MatSolve
[0] 8414.07 Event end: PCApply
[0] 8414.07 Event begin: MatMult
[0] 8414.07 Event begin: VecScatterBegin
[0] 8414.07 Event begin: SFPack
[0] 8414.07 Event end: SFPack
[0] 8414.07 Event end: VecScatterBegin
[0] 8414.07 Event begin: VecScatterEnd
[0] 8414.07 Event begin: SFUnpack
[0] 8414.07 Event end: SFUnpack
[0] 8414.07 Event end: VecScatterEnd
[0] 8414.07 Event end: MatMult
[0] 8414.07 Event begin: VecMDot
[0] 8414.07 Event end: VecMDot
[0] 8414.07 Event begin: VecMAXPY
[0] 8414.07 Event end: VecMAXPY
[0] 8414.08 Event begin: VecNorm
[0] 8414.08 Event end: VecNorm
[0] 8414.08 Event begin: VecScale
[0] 8414.08 Event end: VecScale
[0] KSPConvergedDefault(): Linear solver has converged. Residual norm 8.897908325511e-05 is less than relative tolerance 1.000000000000e-08 times initial right hand side norm 1.466597558465e+04 at iteration 53
[0] 8414.08 Event begin: VecSet
[0] 8414.08 Event end: VecSet
[0] 8414.08 Event begin: VecMAXPY
[0] 8414.08 Event end: VecMAXPY
[0] 8414.08 Event begin: VecCopy
[0] 8414.08 Event end: VecCopy
[0] 8414.08 Event begin: VecAXPY
[0] 8414.08 Event end: VecAXPY
[0] 8414.08 Event begin: MatMult
[0] 8414.08 Event begin: VecScatterBegin
[0] 8414.08 Event begin: SFPack
[0] 8414.08 Event end: SFPack
[0] 8414.08 Event end: VecScatterBegin
[0] 8414.08 Event begin: VecScatterEnd
[0] 8414.08 Event begin: SFUnpack
[0] 8414.08 Event end: SFUnpack
[0] 8414.08 Event end: VecScatterEnd
[0] 8414.08 Event end: MatMult
[0] 8414.08 Event begin: VecAYPX
[0] 8414.08 Event end: VecAYPX
[0] 8414.08 Event begin: VecNorm
[0] 8414.08 Event end: VecNorm
53 KSP unpreconditioned resid norm 8.897908325511e-05 true resid norm -nan ||r(i)||/||b|| -nan
[0] 8414.08 Event begin: VecSet
[0] 8414.08 Event end: VecSet
[0] 8414.08 Event begin: VecMAXPY
[0] 8414.08 Event end: VecMAXPY
[0] 8414.08 Event begin: VecAXPY
[0] 8414.08 Event end: VecAXPY
Linear solve converged due to CONVERGED_RTOL iterations 53
[0] 8414.08 Event end: KSPSolve
KSP Object: 4 MPI processes
type: fgmres
restart=100, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement
happy breakdown tolerance 1e-30
maximum iterations=500, initial guess is zero
tolerances: relative=1e-08, absolute=1e-50, divergence=10000.
right preconditioning
using UNPRECONDITIONED norm type for convergence test
PC Object: 4 MPI processes
type: bjacobi
number of blocks = 4
Local solver information for first block is in the following KSP and PC objects on rank 0:
Use -ksp_view ::ascii_info_detail to display information for all blocks
KSP Object: (sub_) 1 MPI processes
type: preonly
maximum iterations=10000, initial guess is zero
tolerances: relative=1e-05, absolute=1e-50, divergence=10000.
left preconditioning
using NONE norm type for convergence test
PC Object: (sub_) 1 MPI processes
type: lu
out-of-place factorization
tolerance for zero pivot 2.22045e-14
matrix ordering: nd
factor fill ratio given 5., needed 3.8053
Factored matrix follows:
Mat Object: 1 MPI processes
type: seqaij
rows=1089, cols=1089
package used to perform factorization: petsc
total: nonzeros=77571, allocated nonzeros=77571
using I-node routines: found 363 nodes, limit used is 5
linear system matrix = precond matrix:
Mat Object: (sub_) 1 MPI processes
type: seqaij
rows=1089, cols=1089
total: nonzeros=20385, allocated nonzeros=20385
total number of mallocs used during MatSetValues calls=0
using I-node routines: found 363 nodes, limit used is 5
linear system matrix = precond matrix:
Mat Object: 4 MPI processes
type: mpiaij
rows=4353, cols=4353
total: nonzeros=88389, allocated nonzeros=88389
total number of mallocs used during MatSetValues calls=0
using I-node (on process 0) routines: found 363 nodes, limit used is 5
Solver converged within 53 iterations. Elapsed time: 1.699531
Newton iteration: 0 - L2 Position Norm: INF - L2 Pressure Norm: INF
Memory used by each processor: 36.250000 Mb
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