[petsc-users] Configuring with CMake

[Palmer, Bruce J]

The contents of the petsc.pc file are listed below. It looks good to me. The Libs.private variable seems to include the -lf2clapack and -lf2cblas libraries. I don't know how this info gets propagated up the build chain.

Bruce

prefix=/pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt
exec_prefix=${prefix}
includedir=${prefix}/include
libdir=${prefix}/lib
ccompiler=mpicc
cflags_extra=-fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O
cflags_dep=-MMD -MP
ldflag_rpath=-Wl,-rpath,
cxxcompiler=mpicxx
cxxflags_extra=-Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O  -std=gnu++11
fcompiler=mpif90
fflags_extra=-Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O

Name: PETSc
Description: Library to solve ODEs and algebraic equations
Version: 3.16.3
Cflags:   -I${includedir} -I/pic/projects/gridpack/software/petsc-3.16.3/include
Libs: -L${libdir} -lpetsc
Libs.private: -L/pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib -L/share/apps/openmpi/3.0.1/gcc/6.1.0/lib -L/qfs/projects/ops/rh6/gcc/6.1.0/lib/gcc/x86_64-pc-linux-gnu/6.1.0 -L/qfs/projects/ops/rh6/gcc/6.1.0/lib/gcc -L/qfs/projects/ops/rh6/gcc/6.1.0/lib64 -L/qfs/projects/ops/rh6/gcc/6.1.0/lib -lspqr -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt -lsuperlu -lsuperlu_dist -lf2clapack -lf2cblas -lparmetis -lmetis -lm -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl

On 2/22/22, 8:39 AM, "Satish Balay" <balay at mcs.anl.gov> wrote:

    The relevant pkg-config commands are:

    balay at sb /home/balay/petsc (release=)
    $ pkg-config --libs arch-linux-c-debug/lib/pkgconfig/petsc.pc 
    -L/home/balay/petsc/arch-linux-c-debug/lib -lpetsc 
    balay at sb /home/balay/petsc (release=)
    $ pkg-config --shared --libs arch-linux-c-debug/lib/pkgconfig/petsc.pc 
    -L/home/balay/petsc/arch-linux-c-debug/lib -lpetsc 
    balay at sb /home/balay/petsc (release=)
    $ pkg-config --static --libs arch-linux-c-debug/lib/pkgconfig/petsc.pc 
    -L/home/balay/petsc/arch-linux-c-debug/lib -lpetsc -L/home/balay/soft/mpich-3.4.2/lib -L/usr/lib/gcc/x86_64-redhat-linux/11 -llapack -lblas -lm -lX11 -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl 


    And more example usages in share/petsc/Makefile.user

    Satish


    On Tue, 22 Feb 2022, Barry Smith wrote:

    >  Bruce,
    > 
    >   Can you please send the PkgConfig calls that you make to get the PETSc values? And then exactly what PETSc PkgConfig returns.
    > 
    > Thanks
    > 
    >    Barry
    > 
    > 
    > > On Feb 22, 2022, at 11:03 AM, Palmer, Bruce J via petsc-users <petsc-users at mcs.anl.gov> wrote:
    > > 
    > > Hi,
    > >  
    > > We recently switched the CMake configuration on our GridPACK application to use the PkgConfig utility instead of Jeb Brown’s FindPETSc.cmake module. This seems to work on a number of platforms but it is failing to link on others. It appears that the build cannot find the LAPACK and BLAS libraries. The PETSc library I’m linking to (v3.16.3) was configured with -download-f2cblaslapack so it should have these libraries, but when I try and link one of the test applications in GridPACK I get the errors
    > >  
    > > /share/apps/gcc/6.1.0/bin/g++ -pthread -g -rdynamic CMakeFiles/greetings.dir/test/greetings.cpp.o -o greetings  -Wl,-rpath,/qfs/projects/ops/rh6/openmpi/3.0.1/gcc/6.1.0/lib ../math/libgridpack_math.a libgridpack_parallel.a ../timer/libgridpack_timer.a ../environment/libgridpack_environment.a ../math/libgridpack_math.a /pic/projects/gridpack/software/boost_1_65_0/lib/libboost_mpi.a /pic/projects/gridpack/software/boost_1_65_0/lib/libboost_serialization.a /pic/projects/gridpack/software/boost_1_65_0/lib/libboost_random.a /pic/projects/gridpack/software/boost_1_65_0/lib/libboost_filesystem.a /pic/projects/gridpack/software/boost_1_65_0/lib/libboost_system.a /pic/projects/gridpack/software/ga-5.7/build_pr/lib/libga++.a /pic/projects/gridpack/software/ga-5.7/build_pr/lib/libga.a /pic/projects/gridpack/software/ga-5.7/build_pr/lib/libarmci.a -lrt /usr/lib64/librt.so /usr/lib64/libdl.so /qfs/projects/ops/rh6/openmpi/3.0.1/gcc/6.1.0/lib/libmpi.so ../timer/libgridpack_timer.a libgridpack_
     parallel.a ../configuration/libgridpack_configuration.a /pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib/libpetsc.a 
    > > /pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib/libpetsc.a(zstart.o): In function `petscinitializef_':
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/sys/objects/ftn-custom/zstart.c:280: undefined reference to `mpi_init_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib/libpetsc.a(baijfact.o): In function `MatSolve_SeqBAIJ_N':
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/mat/impls/baij/seq/baijfact.c:1462: undefined reference to `zgemv_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/mat/impls/baij/seq/baijfact.c:1475: undefined reference to `zgemv_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/mat/impls/baij/seq/baijfact.c:1478: undefined reference to `zgemv_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib/libpetsc.a(baijfact.o): In function `MatSolve_SeqBAIJ_N_NaturalOrdering':
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/mat/impls/baij/seq/baijfact.c:1407: undefined reference to `zgemv_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/src/mat/impls/baij/seq/baijfact.c:1420: undefined reference to `zgemv_'
    > > /pic/projects/gridpack/software/petsc-3.16.3/linux-openmpi-gnu-cxx-complex-opt/lib/libpetsc.a(baijfact.o):/pic/projects/gridpack/software/petsc-3.16.3/sr
    > >  
    > > I suspect that the reason it worked for others and not for me is that they had viable blas and lapack libraries in their path and I don’t. Is there anything special you need to do to make sure that the build is pointed at the libraries that get created with the -download-f2cblaslapack option?
    > >  
    > > Bruce Palmer
    > 
    >