[petsc-users] PETSc 3.15.3 compiling error

Sam Guo sam.guo at cd-adapco.com
Wed Sep 1 15:06:07 CDT 2021 

Hi Junchao,
   Your suggestion works. Thanks a lot.

BR,
Sam

On Wed, Sep 1, 2021 at 1:02 PM Sam Guo <sam.guo at cd-adapco.com> wrote:

> Hi Matt,
>    I tried  --with-mumps-dir but same error.
>
> Hi Junchao,
>    That's a very good clue and suggestion. I looked petscpkg_version.h. It
> is empty as follows. I'll follow your suggestion and define those macros in
> mumps.c.
>
> #if !defined(INCLUDED_PETSCPKG_VERSION_H)
> #define INCLUDED_PETSCPKG_VERSION_H
>
> #endif
>
> Hi Satish,
>    Yes, what I am doing is hacking but it is necessary since have own own
> mpi wrapper.
>
> Thank you all,
> Sam
>
> On Wed, Sep 1, 2021 at 12:52 PM Satish Balay <balay at mcs.anl.gov> wrote:
>
>> Well the build process used here is:
>>
>> >> (1) defined  -DPETSC_HAVE_MUMPS,
>> >> (2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
>>
>>
>> i.e configure is skipped [for mumps part] so PETSC_PKG_MUMPS_VERSION_GE
>> etc are missing [hence this error]
>>
>> Satish
>>
>> On Wed, 1 Sep 2021, Junchao Zhang wrote:
>>
>> > On Wed, Sep 1, 2021 at 2:20 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
>> >
>> > > If we go back to the original compiling error,
>> > > "petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31: error: missing
>> binary
>> > > operator before token "("
>> > >    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)"
>> > > I don't understand what PETSC_PKG_MUMPS_VERSION_GE(5,3,0) is doing.
>> > >
>> > When petsc is configured with mumps, you will find the macro
>> > PETSC_PKG_MUMPS_VERSION_GE(MAJOR,MINOR,SUBMINOR) in
>> > $PETSC_ARCH/include/petscpkg_version.h
>> > Sam, you can manually compile the failed file, mumps.c, with
>> preprocessing,
>> > to see what is wrong in the expansion of the macro.
>> >
>> >
>> > >
>> > > On Wed, Sep 1, 2021 at 12:12 PM Sam Guo <sam.guo at cd-adapco.com>
>> wrote:
>> > >
>> > >> I believe I am using MUMPS since I have done following
>> > >> (1) defined  -DPETSC_HAVE_MUMPS,
>> > >> (2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
>> > >> (3) link my pre-compiled MUMPS, and
>> > >> (4) specifies following PETSc options
>> > >>        checkError(EPSGetST(eps, &st));
>> > >>         checkError(STSetType(st, STSINVERT));
>> > >>         //if(useShellMatrix) checkError(STSetMatMode(st,
>> > >> ST_MATMODE_SHELL));
>> > >>         checkError(STGetKSP(st, &ksp));
>> > >>         checkError(KSPSetOperators(ksp, A, A));
>> > >>         checkError(KSPSetType(ksp, KSPPREONLY));
>> > >>         checkError(KSPGetPC(ksp, &pc));
>> > >>         checkError(MatSetOption(A, MAT_SPD, PETSC_TRUE));
>> > >>         checkError(PCSetType(pc, PCCHOLESKY));
>> > >>         checkError(PCFactorSetMatSolverType(pc, MATSOLVERMUMPS));
>> > >>         checkError(PCFactorSetUpMatSolverType(pc));
>> > >>         checkError(PetscOptionsSetValue(NULL,
>> "-mat_mumps_icntl_13","1"));
>> > >>
>> > >> Another evidence I am using MUMPS is that If I skip (1)-(3) above, I
>> got
>> > >> the PETSc error saying that MUMPS is required.
>> > >>
>> > >> On Wed, Sep 1, 2021 at 12:00 PM Satish Balay <balay at mcs.anl.gov>
>> wrote:
>> > >>
>> > >>> mumps is a fortran package - so best to specify fc. Any specific
>> reason
>> > >>> for needing to force '--with-fc=0'?
>> > >>>
>> > >>> The attached configure.log is not using mumps.
>> > >>>
>> > >>> Satish
>> > >>>
>> > >>> On Wed, 1 Sep 2021, Sam Guo wrote:
>> > >>>
>> > >>> > fc should not be required since I link PETSc with pre-compiled
>> MUMPS.
>> > >>> In
>> > >>> > fact, --with-mumps-include --with-mumps-lib --with-mumps-serial
>> should
>> > >>> not
>> > >>> > be required since my own CMake defines -DPETSC_HAVE_MUMPS and
>> links my
>> > >>> > pre-compiled MUMPS.
>> > >>> >
>> > >>> > I am able to make it work using PETSc 3.11.3. Attached please
>> find the
>> > >>> > cPETSc 3.11.3 onfigure.log PETSc.
>> > >>> >
>> > >>> > On Tue, Aug 31, 2021 at 4:47 PM Satish Balay <balay at mcs.anl.gov>
>> > >>> wrote:
>> > >>> >
>> > >>> > >
>> > >>> > >
>> > >>>
>> *******************************************************************************
>> > >>> > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
>> > >>> configure.log for
>> > >>> > > details):
>> > >>> > >
>> > >>> > >
>> > >>>
>> -------------------------------------------------------------------------------
>> > >>> > > Package mumps requested requires Fortran but compiler turned
>> off.
>> > >>> > >
>> > >>> > >
>> > >>>
>> *******************************************************************************
>> > >>> > >
>> > >>> > > i.e remove '--with-fc=0' and rerun configure.
>> > >>> > >
>> > >>> > > Satish
>> > >>> > >
>> > >>> > > On Tue, 31 Aug 2021, Sam Guo wrote:
>> > >>> > >
>> > >>> > > > Attached please find the latest configure.log.
>> > >>> > > >
>> > >>> > > > grep MUMPS_VERSION
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION "5.2.1"
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION_MAX_LEN
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION_MAX_LEN 30
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:
>> > >>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION "5.2.1"
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION_MAX_LEN
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION_MAX_LEN 30
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:
>> > >>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
>> > >>> > > > MUMPS_VERSION "5.2.1"
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION_MAX_LEN
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
>> > >>> > > > MUMPS_VERSION_MAX_LEN 30
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:
>> > >>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION "5.2.1"
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
>> > >>> > > > MUMPS_VERSION_MAX_LEN
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
>> > >>> > > > MUMPS_VERSION_MAX_LEN 30
>> > >>> > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:
>> > >>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>> > >>> > > >
>> > >>> > > > On Mon, Aug 30, 2021 at 9:47 PM Satish Balay <
>> balay at mcs.anl.gov>
>> > >>> wrote:
>> > >>> > > >
>> > >>> > > > > Also - what do you have for:
>> > >>> > > > >
>> > >>> > > > > grep MUMPS_VERSION
>> > >>> > > > >
>> > >>> > >
>> > >>>
>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
>> > >>> > > > >
>> > >>> > > > > Satish
>> > >>> > > > >
>> > >>> > > > > On Mon, 30 Aug 2021, Satish Balay via petsc-users wrote:
>> > >>> > > > >
>> > >>> > > > > > please resend the logs
>> > >>> > > > > >
>> > >>> > > > > > Satish
>> > >>> > > > > >
>> > >>> > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
>> > >>> > > > > >
>> > >>> > > > > > > Same compiling error with --with-mumps-serial=1.
>> > >>> > > > > > >
>> > >>> > > > > > > On Mon, Aug 30, 2021 at 8:22 PM Satish Balay <
>> > >>> balay at mcs.anl.gov>
>> > >>> > > > > wrote:
>> > >>> > > > > > >
>> > >>> > > > > > > > Use the additional option: -with-mumps-serial
>> > >>> > > > > > > >
>> > >>> > > > > > > > Satish
>> > >>> > > > > > > >
>> > >>> > > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
>> > >>> > > > > > > >
>> > >>> > > > > > > > > Attached please find the configure.log. I use my own
>> > >>> CMake. I
>> > >>> > > have
>> > >>> > > > > > > > > defined -DPETSC_HAVE_MUMPS. Thanks.
>> > >>> > > > > > > > >
>> > >>> > > > > > > > > On Mon, Aug 30, 2021 at 4:56 PM Sam Guo <
>> > >>> sam.guo at cd-adapco.com
>> > >>> > > >
>> > >>> > > > > wrote:
>> > >>> > > > > > > > >
>> > >>> > > > > > > > > > I use pre-installed
>> > >>> > > > > > > > > >
>> > >>> > > > > > > > > > On Mon, Aug 30, 2021 at 4:53 PM Satish Balay <
>> > >>> > > balay at mcs.anl.gov>
>> > >>> > > > > > > > wrote:
>> > >>> > > > > > > > > >
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >> Are you using --download-mumps or pre-installed
>> > >>> mumps? If
>> > >>> > > using
>> > >>> > > > > > > > > >> pre-installed - try --download-mumps.
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >> If you still have issues - send us configure.log
>> and
>> > >>> > > make.log
>> > >>> > > > > from the
>> > >>> > > > > > > > > >> failed build.
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >> Satish
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >> On Mon, 30 Aug 2021, Sam Guo wrote:
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >> > Dear PETSc dev team,
>> > >>> > > > > > > > > >> >    I am compiling petsc 3.15.3 and got
>> following
>> > >>> compiling
>> > >>> > > > > error
>> > >>> > > > > > > > > >> >
>> petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31:
>> > >>> error:
>> > >>> > > > > missing
>> > >>> > > > > > > > binary
>> > >>> > > > > > > > > >> > operator before token "("
>> > >>> > > > > > > > > >> >    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)
>> > >>> > > > > > > > > >> >    Any idea what I did wrong?
>> > >>> > > > > > > > > >> >
>> > >>> > > > > > > > > >> > Thanks,
>> > >>> > > > > > > > > >> > Sam
>> > >>> > > > > > > > > >> >
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > > >>
>> > >>> > > > > > > > >
>> > >>> > > > > > > >
>> > >>> > > > > > > >
>> > >>> > > > > > >
>> > >>> > > > > >
>> > >>> > > > >
>> > >>> > > > >
>> > >>> > > >
>> > >>> > >
>> > >>> > >
>> > >>> >
>> > >>>
>> > >>>
>> >
>>
>>
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