[petsc-users] PETSc 3.15.3 compiling error
Satish Balay
balay at mcs.anl.gov
Wed Sep 1 14:34:17 CDT 2021
On Wed, 1 Sep 2021, Matthew Knepley wrote:
> On Wed, Sep 1, 2021 at 3:27 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
>
> > For PETSc 3.15.3, if I don't include mat/impls/aij/mpi/mumps/mumps.c, I
> > have no compiling error. But I need it for using MUMPS. It is a compiling
> > error rather than linking error.
> >
>
> I will ask a different way:
>
> Can you run configure, but point it at your MUMPS installation?
>
> --with-mumps-dir=</path/to/mumps>
It won't overcome this issue:
>>>
Package mumps requested requires Fortran but compiler turned off.
<<<
Satish
>
> Thanks,
>
> Matt
>
>
> > On Wed, Sep 1, 2021 at 12:22 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
> >
> >> My process only works for PTESc 3.11.3, not 3.15.3 and that's why I
> >> started this email thread.
> >>
> >> On Wed, Sep 1, 2021 at 12:19 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
> >>
> >>> If we go back to the original compiling error,
> >>> "petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31: error: missing binary
> >>> operator before token "("
> >>> 52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)"
> >>> I don't understand what PETSC_PKG_MUMPS_VERSION_GE(5,3,0) is doing.
> >>>
> >>> On Wed, Sep 1, 2021 at 12:12 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
> >>>
> >>>> I believe I am using MUMPS since I have done following
> >>>> (1) defined -DPETSC_HAVE_MUMPS,
> >>>> (2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
> >>>> (3) link my pre-compiled MUMPS, and
> >>>> (4) specifies following PETSc options
> >>>> checkError(EPSGetST(eps, &st));
> >>>> checkError(STSetType(st, STSINVERT));
> >>>> //if(useShellMatrix) checkError(STSetMatMode(st,
> >>>> ST_MATMODE_SHELL));
> >>>> checkError(STGetKSP(st, &ksp));
> >>>> checkError(KSPSetOperators(ksp, A, A));
> >>>> checkError(KSPSetType(ksp, KSPPREONLY));
> >>>> checkError(KSPGetPC(ksp, &pc));
> >>>> checkError(MatSetOption(A, MAT_SPD, PETSC_TRUE));
> >>>> checkError(PCSetType(pc, PCCHOLESKY));
> >>>> checkError(PCFactorSetMatSolverType(pc, MATSOLVERMUMPS));
> >>>> checkError(PCFactorSetUpMatSolverType(pc));
> >>>> checkError(PetscOptionsSetValue(NULL,
> >>>> "-mat_mumps_icntl_13","1"));
> >>>>
> >>>> Another evidence I am using MUMPS is that If I skip (1)-(3) above, I
> >>>> got the PETSc error saying that MUMPS is required.
> >>>>
> >>>> On Wed, Sep 1, 2021 at 12:00 PM Satish Balay <balay at mcs.anl.gov> wrote:
> >>>>
> >>>>> mumps is a fortran package - so best to specify fc. Any specific
> >>>>> reason for needing to force '--with-fc=0'?
> >>>>>
> >>>>> The attached configure.log is not using mumps.
> >>>>>
> >>>>> Satish
> >>>>>
> >>>>> On Wed, 1 Sep 2021, Sam Guo wrote:
> >>>>>
> >>>>> > fc should not be required since I link PETSc with pre-compiled
> >>>>> MUMPS. In
> >>>>> > fact, --with-mumps-include --with-mumps-lib --with-mumps-serial
> >>>>> should not
> >>>>> > be required since my own CMake defines -DPETSC_HAVE_MUMPS and links
> >>>>> my
> >>>>> > pre-compiled MUMPS.
> >>>>> >
> >>>>> > I am able to make it work using PETSc 3.11.3. Attached please find
> >>>>> the
> >>>>> > cPETSc 3.11.3 onfigure.log PETSc.
> >>>>> >
> >>>>> > On Tue, Aug 31, 2021 at 4:47 PM Satish Balay <balay at mcs.anl.gov>
> >>>>> wrote:
> >>>>> >
> >>>>> > >
> >>>>> > >
> >>>>> *******************************************************************************
> >>>>> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see
> >>>>> configure.log for
> >>>>> > > details):
> >>>>> > >
> >>>>> > >
> >>>>> -------------------------------------------------------------------------------
> >>>>> > > Package mumps requested requires Fortran but compiler turned off.
> >>>>> > >
> >>>>> > >
> >>>>> *******************************************************************************
> >>>>> > >
> >>>>> > > i.e remove '--with-fc=0' and rerun configure.
> >>>>> > >
> >>>>> > > Satish
> >>>>> > >
> >>>>> > > On Tue, 31 Aug 2021, Sam Guo wrote:
> >>>>> > >
> >>>>> > > > Attached please find the latest configure.log.
> >>>>> > > >
> >>>>> > > > grep MUMPS_VERSION
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION "5.2.1"
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION_MAX_LEN
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION_MAX_LEN 30
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:
> >>>>> > > > char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION "5.2.1"
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION_MAX_LEN
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION_MAX_LEN 30
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:
> >>>>> > > > char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> >>>>> > > > MUMPS_VERSION "5.2.1"
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION_MAX_LEN
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> >>>>> > > > MUMPS_VERSION_MAX_LEN 30
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:
> >>>>> > > > char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION "5.2.1"
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> >>>>> > > > MUMPS_VERSION_MAX_LEN
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> >>>>> > > > MUMPS_VERSION_MAX_LEN 30
> >>>>> > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:
> >>>>> > > > char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> >>>>> > > >
> >>>>> > > > On Mon, Aug 30, 2021 at 9:47 PM Satish Balay <balay at mcs.anl.gov>
> >>>>> wrote:
> >>>>> > > >
> >>>>> > > > > Also - what do you have for:
> >>>>> > > > >
> >>>>> > > > > grep MUMPS_VERSION
> >>>>> > > > >
> >>>>> > >
> >>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> >>>>> > > > >
> >>>>> > > > > Satish
> >>>>> > > > >
> >>>>> > > > > On Mon, 30 Aug 2021, Satish Balay via petsc-users wrote:
> >>>>> > > > >
> >>>>> > > > > > please resend the logs
> >>>>> > > > > >
> >>>>> > > > > > Satish
> >>>>> > > > > >
> >>>>> > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> >>>>> > > > > >
> >>>>> > > > > > > Same compiling error with --with-mumps-serial=1.
> >>>>> > > > > > >
> >>>>> > > > > > > On Mon, Aug 30, 2021 at 8:22 PM Satish Balay <
> >>>>> balay at mcs.anl.gov>
> >>>>> > > > > wrote:
> >>>>> > > > > > >
> >>>>> > > > > > > > Use the additional option: -with-mumps-serial
> >>>>> > > > > > > >
> >>>>> > > > > > > > Satish
> >>>>> > > > > > > >
> >>>>> > > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> >>>>> > > > > > > >
> >>>>> > > > > > > > > Attached please find the configure.log. I use my own
> >>>>> CMake. I
> >>>>> > > have
> >>>>> > > > > > > > > defined -DPETSC_HAVE_MUMPS. Thanks.
> >>>>> > > > > > > > >
> >>>>> > > > > > > > > On Mon, Aug 30, 2021 at 4:56 PM Sam Guo <
> >>>>> sam.guo at cd-adapco.com
> >>>>> > > >
> >>>>> > > > > wrote:
> >>>>> > > > > > > > >
> >>>>> > > > > > > > > > I use pre-installed
> >>>>> > > > > > > > > >
> >>>>> > > > > > > > > > On Mon, Aug 30, 2021 at 4:53 PM Satish Balay <
> >>>>> > > balay at mcs.anl.gov>
> >>>>> > > > > > > > wrote:
> >>>>> > > > > > > > > >
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >> Are you using --download-mumps or pre-installed
> >>>>> mumps? If
> >>>>> > > using
> >>>>> > > > > > > > > >> pre-installed - try --download-mumps.
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >> If you still have issues - send us configure.log and
> >>>>> > > make.log
> >>>>> > > > > from the
> >>>>> > > > > > > > > >> failed build.
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >> Satish
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >> On Mon, 30 Aug 2021, Sam Guo wrote:
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >> > Dear PETSc dev team,
> >>>>> > > > > > > > > >> > I am compiling petsc 3.15.3 and got following
> >>>>> compiling
> >>>>> > > > > error
> >>>>> > > > > > > > > >> > petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31:
> >>>>> error:
> >>>>> > > > > missing
> >>>>> > > > > > > > binary
> >>>>> > > > > > > > > >> > operator before token "("
> >>>>> > > > > > > > > >> > 52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)
> >>>>> > > > > > > > > >> > Any idea what I did wrong?
> >>>>> > > > > > > > > >> >
> >>>>> > > > > > > > > >> > Thanks,
> >>>>> > > > > > > > > >> > Sam
> >>>>> > > > > > > > > >> >
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > > >>
> >>>>> > > > > > > > >
> >>>>> > > > > > > >
> >>>>> > > > > > > >
> >>>>> > > > > > >
> >>>>> > > > > >
> >>>>> > > > >
> >>>>> > > > >
> >>>>> > > >
> >>>>> > >
> >>>>> > >
> >>>>> >
> >>>>>
> >>>>>
>
>
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