[petsc-users] PETSc 3.15.3 compiling error

Sam Guo sam.guo at cd-adapco.com
Wed Sep 1 14:26:48 CDT 2021 

For PETSc 3.15.3, if I don't include mat/impls/aij/mpi/mumps/mumps.c, I
have no compiling error. But I need it for using MUMPS. It is a compiling
error rather than linking error.

On Wed, Sep 1, 2021 at 12:22 PM Sam Guo <sam.guo at cd-adapco.com> wrote:

> My process only works for PTESc 3.11.3, not 3.15.3 and that's why I
> started this email thread.
>
> On Wed, Sep 1, 2021 at 12:19 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
>
>> If we go back to the original compiling error,
>> "petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31: error: missing binary
>> operator before token "("
>>    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)"
>> I don't understand what PETSC_PKG_MUMPS_VERSION_GE(5,3,0) is doing.
>>
>> On Wed, Sep 1, 2021 at 12:12 PM Sam Guo <sam.guo at cd-adapco.com> wrote:
>>
>>> I believe I am using MUMPS since I have done following
>>> (1) defined  -DPETSC_HAVE_MUMPS,
>>> (2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
>>> (3) link my pre-compiled MUMPS, and
>>> (4) specifies following PETSc options
>>>        checkError(EPSGetST(eps, &st));
>>>         checkError(STSetType(st, STSINVERT));
>>>         //if(useShellMatrix) checkError(STSetMatMode(st,
>>> ST_MATMODE_SHELL));
>>>         checkError(STGetKSP(st, &ksp));
>>>         checkError(KSPSetOperators(ksp, A, A));
>>>         checkError(KSPSetType(ksp, KSPPREONLY));
>>>         checkError(KSPGetPC(ksp, &pc));
>>>         checkError(MatSetOption(A, MAT_SPD, PETSC_TRUE));
>>>         checkError(PCSetType(pc, PCCHOLESKY));
>>>         checkError(PCFactorSetMatSolverType(pc, MATSOLVERMUMPS));
>>>         checkError(PCFactorSetUpMatSolverType(pc));
>>>         checkError(PetscOptionsSetValue(NULL,
>>> "-mat_mumps_icntl_13","1"));
>>>
>>> Another evidence I am using MUMPS is that If I skip (1)-(3) above, I got
>>> the PETSc error saying that MUMPS is required.
>>>
>>> On Wed, Sep 1, 2021 at 12:00 PM Satish Balay <balay at mcs.anl.gov> wrote:
>>>
>>>> mumps is a fortran package - so best to specify fc. Any specific reason
>>>> for needing to force '--with-fc=0'?
>>>>
>>>> The attached configure.log is not using mumps.
>>>>
>>>> Satish
>>>>
>>>> On Wed, 1 Sep 2021, Sam Guo wrote:
>>>>
>>>> > fc should not be required since I link PETSc with pre-compiled MUMPS.
>>>> In
>>>> > fact, --with-mumps-include --with-mumps-lib --with-mumps-serial
>>>> should not
>>>> > be required since my own CMake defines -DPETSC_HAVE_MUMPS and links my
>>>> > pre-compiled MUMPS.
>>>> >
>>>> > I am able to make it work using PETSc 3.11.3. Attached please find the
>>>> > cPETSc 3.11.3 onfigure.log PETSc.
>>>> >
>>>> > On Tue, Aug 31, 2021 at 4:47 PM Satish Balay <balay at mcs.anl.gov>
>>>> wrote:
>>>> >
>>>> > >
>>>> > >
>>>> *******************************************************************************
>>>> > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
>>>> configure.log for
>>>> > > details):
>>>> > >
>>>> > >
>>>> -------------------------------------------------------------------------------
>>>> > > Package mumps requested requires Fortran but compiler turned off.
>>>> > >
>>>> > >
>>>> *******************************************************************************
>>>> > >
>>>> > > i.e remove '--with-fc=0' and rerun configure.
>>>> > >
>>>> > > Satish
>>>> > >
>>>> > > On Tue, 31 Aug 2021, Sam Guo wrote:
>>>> > >
>>>> > > > Attached please find the latest configure.log.
>>>> > > >
>>>> > > > grep MUMPS_VERSION
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
>>>> > > > MUMPS_VERSION "5.2.1"
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION_MAX_LEN
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
>>>> > > > MUMPS_VERSION_MAX_LEN 30
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:
>>>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
>>>> > > > MUMPS_VERSION "5.2.1"
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION_MAX_LEN
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
>>>> > > > MUMPS_VERSION_MAX_LEN 30
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:
>>>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
>>>> > > > MUMPS_VERSION "5.2.1"
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION_MAX_LEN
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
>>>> > > > MUMPS_VERSION_MAX_LEN 30
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:
>>>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
>>>> > > > MUMPS_VERSION "5.2.1"
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
>>>> > > > MUMPS_VERSION_MAX_LEN
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
>>>> > > > MUMPS_VERSION_MAX_LEN 30
>>>> > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:
>>>> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
>>>> > > >
>>>> > > > On Mon, Aug 30, 2021 at 9:47 PM Satish Balay <balay at mcs.anl.gov>
>>>> wrote:
>>>> > > >
>>>> > > > > Also - what do you have for:
>>>> > > > >
>>>> > > > > grep MUMPS_VERSION
>>>> > > > >
>>>> > >
>>>> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
>>>> > > > >
>>>> > > > > Satish
>>>> > > > >
>>>> > > > > On Mon, 30 Aug 2021, Satish Balay via petsc-users wrote:
>>>> > > > >
>>>> > > > > > please resend the logs
>>>> > > > > >
>>>> > > > > > Satish
>>>> > > > > >
>>>> > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
>>>> > > > > >
>>>> > > > > > > Same compiling error with --with-mumps-serial=1.
>>>> > > > > > >
>>>> > > > > > > On Mon, Aug 30, 2021 at 8:22 PM Satish Balay <
>>>> balay at mcs.anl.gov>
>>>> > > > > wrote:
>>>> > > > > > >
>>>> > > > > > > > Use the additional option: -with-mumps-serial
>>>> > > > > > > >
>>>> > > > > > > > Satish
>>>> > > > > > > >
>>>> > > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
>>>> > > > > > > >
>>>> > > > > > > > > Attached please find the configure.log. I use my own
>>>> CMake. I
>>>> > > have
>>>> > > > > > > > > defined -DPETSC_HAVE_MUMPS. Thanks.
>>>> > > > > > > > >
>>>> > > > > > > > > On Mon, Aug 30, 2021 at 4:56 PM Sam Guo <
>>>> sam.guo at cd-adapco.com
>>>> > > >
>>>> > > > > wrote:
>>>> > > > > > > > >
>>>> > > > > > > > > > I use pre-installed
>>>> > > > > > > > > >
>>>> > > > > > > > > > On Mon, Aug 30, 2021 at 4:53 PM Satish Balay <
>>>> > > balay at mcs.anl.gov>
>>>> > > > > > > > wrote:
>>>> > > > > > > > > >
>>>> > > > > > > > > >>
>>>> > > > > > > > > >> Are you using --download-mumps or pre-installed
>>>> mumps? If
>>>> > > using
>>>> > > > > > > > > >> pre-installed - try --download-mumps.
>>>> > > > > > > > > >>
>>>> > > > > > > > > >> If you still have issues - send us configure.log and
>>>> > > make.log
>>>> > > > > from the
>>>> > > > > > > > > >> failed build.
>>>> > > > > > > > > >>
>>>> > > > > > > > > >> Satish
>>>> > > > > > > > > >>
>>>> > > > > > > > > >> On Mon, 30 Aug 2021, Sam Guo wrote:
>>>> > > > > > > > > >>
>>>> > > > > > > > > >> > Dear PETSc dev team,
>>>> > > > > > > > > >> >    I am compiling petsc 3.15.3 and got following
>>>> compiling
>>>> > > > > error
>>>> > > > > > > > > >> > petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31:
>>>> error:
>>>> > > > > missing
>>>> > > > > > > > binary
>>>> > > > > > > > > >> > operator before token "("
>>>> > > > > > > > > >> >    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)
>>>> > > > > > > > > >> >    Any idea what I did wrong?
>>>> > > > > > > > > >> >
>>>> > > > > > > > > >> > Thanks,
>>>> > > > > > > > > >> > Sam
>>>> > > > > > > > > >> >
>>>> > > > > > > > > >>
>>>> > > > > > > > > >>
>>>> > > > > > > > >
>>>> > > > > > > >
>>>> > > > > > > >
>>>> > > > > > >
>>>> > > > > >
>>>> > > > >
>>>> > > > >
>>>> > > >
>>>> > >
>>>> > >
>>>> >
>>>>
>>>>
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