[petsc-users] configure error

Junchao Zhang junchao.zhang at gmail.com
Sun May 16 08:27:37 CDT 2021


Check the meaning of 'srun: error: Unable to create step for job 1921749:
More processors requested than permitted'

--Junchao Zhang


On Sun, May 16, 2021 at 7:58 AM Mark Adams <mfadams at lbl.gov> wrote:

> Whoops, between scp'ing and soft links I gave you the wrong log file. I
> removed this already.
>
> On Sun, May 16, 2021 at 8:37 AM Junchao Zhang <junchao.zhang at gmail.com>
> wrote:
>
>> Remove --with-kokkos-cuda-arch=VOLTA70 from your configure
>>
>> Barry: It seems we should either disable this option, or rename it to
>> --with-cuda-arch and get it accepted by both kokkos.py and cuda.py
>>
>> --Junchao Zhang
>>
>> On Sun, May 16, 2021 at 6:15 AM Mark Adams <mfadams at lbl.gov> wrote:
>>
>>> progress:
>>>
>>> 04:08 cgpu11 adams/cusparse-cpu-solve *= ~/petsc$ make
>>> PETSC_DIR=/global/homes/m/madams/petsc
>>> PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc check
>>> Running check examples to verify correct installation
>>> Using PETSC_DIR=/global/homes/m/madams/petsc and
>>> PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc
>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
>>> Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes
>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>> srun: error: Unable to create step for job 1921749: More processors
>>> requested than permitted
>>> 2,15c2,32
>>> <   0 SNES Function norm 2.391552133017e-01
>>> <     0 KSP Residual norm 2.325621076120e-01
>>> <     1 KSP Residual norm 1.654206318674e-02
>>> <     2 KSP Residual norm 7.202836119880e-04
>>> <     3 KSP Residual norm 1.796861424199e-05
>>> <     4 KSP Residual norm 2.461332992052e-07
>>> <   1 SNES Function norm 6.826585648929e-05
>>> <     0 KSP Residual norm 2.347339172985e-05
>>> <     1 KSP Residual norm 8.356798075993e-07
>>> <     2 KSP Residual norm 1.844045309619e-08
>>> <     3 KSP Residual norm 5.336386977405e-10
>>> <     4 KSP Residual norm 2.662608472862e-11
>>> <   2 SNES Function norm 6.549682264799e-11
>>> < Number of SNES iterations = 2
>>> ---
>>> > Kokkos::Cuda::initialize ERROR: likely mismatch of architecture
>>> > [cgpu11:39927] *** Process received signal ***
>>> > [cgpu11:39927] Signal: Aborted (6)
>>> > [cgpu11:39927] Signal code:  (-6)
>>> > [cgpu11:39927] [ 0] /lib64/libpthread.so.0(+0x12360)[0x2aab12731360]
>>> > [cgpu11:39927] [ 1] /lib64/libc.so.6(gsignal+0x110)[0x2aab12973160]
>>> > [cgpu11:39927] [ 2] /lib64/libc.so.6(abort+0x151)[0x2aab12974741]
>>> > [cgpu11:39927] [ 3]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4(+0x408e5)[0x2aaabbfb88e5]
>>> > [cgpu11:39927] [ 4]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4(_ZN6Kokkos4Impl12CudaInternal10initializeEiP11CUstream_st+0xb5c)[0x2aaabbfc762c]
>>> > [cgpu11:39927] [ 5]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4(_ZN6Kokkos4Impl16ExecSpaceManager17initialize_spacesERKNS_13InitArgumentsE+0x24)[0x2aaabbfa1224]
>>> > [cgpu11:39927] [ 6]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4(_ZN6Kokkos4Impl70_GLOBAL__N__46_tmpxft_00011209_00000000_7_Kokkos_Core_cpp1_ii_889c95a619initialize_internalERKNS_13InitArgumentsE+0x11)[0x2aaabbfa49d1]
>>> > [cgpu11:39927] [ 7]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(PetscKokkosInitializeCheck+0x1f9)[0x2aaaaafad809]
>>> > [cgpu11:39927] [ 8]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x68541b)[0x2aaaab35841b]
>>> > [cgpu11:39927] [ 9]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x36a224)[0x2aaaab03d224]
>>> > [cgpu11:39927] [10]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x35f596)[0x2aaaab032596]
>>> > [cgpu11:39927] [11]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x2f9d94)[0x2aaaaafccd94]
>>> > [cgpu11:39927] [12]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(PetscSFBcastWithMemTypeBegin+0x11f)[0x2aaaab04bc3f]
>>> > [cgpu11:39927] [13]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x37f53a)[0x2aaaab05253a]
>>> > [cgpu11:39927] [14]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(VecScatterBegin+0x70)[0x2aaaab057b30]
>>> > [cgpu11:39927] [15]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(DMGlobalToLocalBegin_DA+0x1f)[0x2aaaabc27a5f]
>>> > [cgpu11:39927] [16]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(DMGlobalToLocalBegin+0x1dd)[0x2aaaabe61b3d]
>>> > [cgpu11:39927] [17]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x144567a)[0x2aaaac11867a]
>>> > [cgpu11:39927] [18]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(SNESComputeFunction+0xf5)[0x2aaaac138ef5]
>>> > [cgpu11:39927] [19]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(+0x14ad0de)[0x2aaaac1800de]
>>> > [cgpu11:39927] [20]
>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libpetsc.so.3.015(SNESSolve+0x821)[0x2aaaac146ed1]
>>> > [cgpu11:39927] [21]
>>> /global/u2/m/madams/petsc/src/snes/tutorials/./ex19[0x401a69]
>>> > [cgpu11:39927] [22]
>>> /lib64/libc.so.6(__libc_start_main+0xea)[0x2aab1295df8a]
>>> > [cgpu11:39927] [23]
>>> /global/u2/m/madams/petsc/src/snes/tutorials/./ex19[0x4021ba]
>>> > [cgpu11:39927] *** End of error message ***
>>> > srun: error: cgpu11: task 0: Aborted
>>> > srun: Terminating job step 1921749.6
>>> /global/homes/m/madams/petsc/src/snes/tutorials
>>> Possible problem with ex19 running with cuda, diffs above
>>> =========================================
>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 1 (ignored)
>>>
>>> On Sun, May 16, 2021 at 12:31 AM Barry Smith <bsmith at petsc.dev> wrote:
>>>
>>>>
>>>>   Looks like nvcc_wrapper gets confused when both -arch and -gencode
>>>> are used. But handles either of them separately correctly.
>>>>
>>>>   Mark,
>>>>
>>>>     PETSc configure now handles  the -arch and --with-kokkos-cuda-arch=
>>>>  business automatically so you do not, and generally shouldn't pass -arch
>>>> sm_70 in  --CUDAFLAGS anymore or use the --with-kokkos-cuda-arch option
>>>> anymore.
>>>>
>>>>     If you need to set the -arch to something earlier than the system
>>>> supports (rare) you can now use -with-cuda-gencodearch to set that instead
>>>> of using CUDAFLAGS.
>>>>
>>>>   Barry
>>>>
>>>>
>>>> $ NVCC_WRAPPER_DEFAULT_COMPILER=mpicxx
>>>> /home/bsmith/petsc/arch-main/bin/nvcc_wrapper --show --expt-extended-lambda
>>>> -c -Xcompiler -fPIC -g  -gencode arch=compute_70,code=sm_70
>>>> -I/home/bsmith/soft/gnu-mpich/include -Wno-deprecated-gpu-targets
>>>> -I/home/bsmith/petsc/include -I/home/bsmith/petsc/arch-main/include
>>>> -I/nfs/apps/spacks/2021-02-09/opt/spack/linux-centos7-x86_64/gcc-7.3.0/cuda-11.2.0-ikruu5mo6dtt3avvmwsejouqhxu4btdm/include
>>>>     /home/bsmith/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
>>>> -o arch-main/obj/ts/utils/dmplexlandau/kokkos/landau.o
>>>> nvcc --expt-extended-lambda -gencode arch=compute_70,code=sm_70
>>>> -Wno-deprecated-gpu-targets -ccbin mpicxx -g
>>>> -I/home/bsmith/soft/gnu-mpich/include -I/home/bsmith/petsc/include
>>>> -I/home/bsmith/petsc/arch-main/include
>>>> -I/nfs/apps/spacks/2021-02-09/opt/spack/linux-centos7-x86_64/gcc-7.3.0/cuda-11.2.0-ikruu5mo6dtt3avvmwsejouqhxu4btdm/include
>>>> -Xcompiler -fPIC -x cu
>>>> /home/bsmith/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx -c -o
>>>> arch-main/obj/ts/utils/dmplexlandau/kokkos/landau.o
>>>> ~/petsc* (main=)* arch-main
>>>>
>>>> $ NVCC_WRAPPER_DEFAULT_COMPILER=mpicxx
>>>> /home/bsmith/petsc/arch-main/bin/nvcc_wrapper --show --expt-extended-lambda
>>>> -c -arch=sm_70 -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10
>>>> -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3  -gencode
>>>> arch=compute_80,code=sm_80
>>>> -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include
>>>> -Wno-deprecated-gpu-targets
>>>> nvcc --expt-extended-lambda -arch=sm_70 -Wno-deprecated-gpu-targets
>>>> -ccbin mpicxx -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10
>>>> -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O3
>>>> -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -Xcompiler
>>>> -rdynamic,-fPIC,arch=compute_80,code=sm_80 -c
>>>> ~/petsc* (main=)* arch-main
>>>>
>>>> $ NVCC_WRAPPER_DEFAULT_COMPILER=mpicxx
>>>> /home/bsmith/petsc/arch-main/bin/nvcc_wrapper --show --expt-extended-lambda
>>>> -c -Xcompiler -fPIC -g -arch=sm_70 -gencode arch=compute_70,code=sm_70
>>>> -I/home/bsmith/soft/gnu-mpich/include -Wno-deprecated-gpu-targets
>>>> -I/home/bsmith/petsc/include -I/home/bsmith/petsc/arch-main/include
>>>> -I/nfs/apps/spacks/2021-02-09/opt/spack/linux-centos7-x86_64/gcc-7.3.0/cuda-11.2.0-ikruu5mo6dtt3avvmwsejouqhxu4btdm/include
>>>>     /home/bsmith/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
>>>> -o arch-main/obj/ts/utils/dmplexlandau/kokkos/landau.o
>>>> nvcc --expt-extended-lambda -arch=sm_70 -Wno-deprecated-gpu-targets
>>>> -ccbin mpicxx -g -I/home/bsmith/soft/gnu-mpich/include
>>>> -I/home/bsmith/petsc/include -I/home/bsmith/petsc/arch-main/include
>>>> -I/nfs/apps/spacks/2021-02-09/opt/spack/linux-centos7-x86_64/gcc-7.3.0/cuda-11.2.0-ikruu5mo6dtt3avvmwsejouqhxu4btdm/include
>>>> -Xcompiler -fPIC,arch=compute_70,code=sm_70 -x cu
>>>> /home/bsmith/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx -c -o
>>>> arch-main/obj/ts/utils/dmplexlandau/kokkos/landau.o
>>>>
>>>>
>>>> On May 15, 2021, at 8:44 PM, Junchao Zhang <junchao.zhang at gmail.com>
>>>> wrote:
>>>>
>>>> Add --show to the failing nvcc_wrapper command and see how
>>>> nvcc_wrapper parses the options
>>>>
>>>>
>>>> PATH=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin:/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin:/usr/common/software/sles15_cgpu/cuda/11.1.1/bin:/usr/common/software/sles15_cgpu/gcc/8.3.0/bin:/opt/esslurm/bin:/opt/cray/pe/modules/
>>>> 3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin:`dirname
>>>> <http://3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin:dirname> /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc`
>>>> NVCC_WRAPPER_DEFAULT_COMPILER=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx
>>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/nvcc_wrapper
>>>> --expt-extended-lambda -c -arch=sm_70 -Xcompiler -rdynamic -DLANDAU_DIM=2
>>>> -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4
>>>> -Xcompiler -fPIC -O3  -gencode arch=compute_80,code=sm_80
>>>>  -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include
>>>> -Wno-deprecated-gpu-targets   -I/global/homes/m/madams/petsc/include
>>>> -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include
>>>> -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include
>>>> -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include
>>>>  /global/u2/m/madams/petsc/src/sys/objects/kokkos/kinit.kokkos.cxx -o
>>>> arch-cori-gpu-opt-kokkos-gcc/obj/sys/objects/kokkos/kinit.o --show
>>>>
>>>> --Junchao Zhang
>>>>
>>>>
>>>> On Sat, May 15, 2021 at 7:14 PM Mark Adams <mfadams at lbl.gov> wrote:
>>>>
>>>>> Thanks,
>>>>> Now I get an error in make all. THis was working a few weeks ago.
>>>>> Make.log was empty but here is the output.
>>>>>  ....
>>>>>        CC arch-cori-gpu-opt-kokkos-gcc/obj/sys/error/ftn-custom/zerrf.o
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/sys/f90-src/f90_cwrap.o
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/hdf5io.o
>>>>>
>>>>> PATH=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin:/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin:/usr/common/software/sles15_cgpu/cuda/11.1.1/bin:/usr/common/software/sles15_cgpu/gcc/8.3.0/bin:/opt/esslurm/bin:/opt/cray/pe/modules/
>>>>> 3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin:`dirname
>>>>> <http://3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin:dirname>
>>>>> /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc`
>>>>> NVCC_WRAPPER_DEFAULT_COMPILER=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx
>>>>> /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/nvcc_wrapper
>>>>> --expt-extended-lambda -c -arch=sm_70 -Xcompiler -rdynamic -DLANDAU_DIM=2
>>>>> -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4
>>>>> -Xcompiler -fPIC -O3  -gencode arch=compute_80,code=sm_80
>>>>>  -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include
>>>>> -Wno-deprecated-gpu-targets   -I/global/homes/m/madams/petsc/include
>>>>> -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include
>>>>> -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include
>>>>> -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include
>>>>>  /global/u2/m/madams/petsc/src/sys/objects/kokkos/kinit.kokkos.cxx -o
>>>>> arch-cori-gpu-opt-kokkos-gcc/obj/sys/objects/kokkos/kinit.o
>>>>> g++: error: arch=compute_80: No such file or directory
>>>>> g++: error: code=sm_80: No such file or directory
>>>>> gmake[3]: *** [gmakefile:188:
>>>>> arch-cori-gpu-opt-kokkos-gcc/obj/sys/objects/kokkos/kinit.o] Error 1
>>>>> gmake[3]: *** Waiting for unfinished jobs....
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/isio.o
>>>>>           CC
>>>>> arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/ftn-auto/pmapf.o
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/pmap.o
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/psort.o
>>>>>           CC arch-cori-gpu-opt-kokkos-gcc/obj/vec/is/utils/isltog.o
>>>>>           FC arch-cori-gpu-opt-kokkos-gcc/obj/vec/f90-mod/petscvecmod.o
>>>>>        CUDAC
>>>>> arch-cori-gpu-opt-kokkos-gcc/obj/sys/memory/cuda/mcudahost.o
>>>>>    CUDAC.dep
>>>>> arch-cori-gpu-opt-kokkos-gcc/obj/sys/memory/cuda/mcudahost.o
>>>>> gmake[2]: *** [/global/homes/m/madams/petsc/lib/petsc/conf/rules:50:
>>>>> libs] Error 2
>>>>> **************************ERROR*************************************
>>>>>   Error during compile, check
>>>>> arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/make.log
>>>>>   Send it and
>>>>> arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure.log to
>>>>> petsc-maint at mcs.anl.gov
>>>>> ********************************************************************
>>>>> gmake[1]: *** [makefile:40: all] Error 1
>>>>> make: *** [GNUmakefile:9: all] Error 2
>>>>>
>>>>> On Sat, May 15, 2021 at 5:30 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>>
>>>>>>
>>>>>>   Bitbucket is off-line. Do you need fortran stubs at this moment? If
>>>>>> not use  --with-fortran-interface=0
>>>>>>
>>>>>>
>>>>>> On May 15, 2021, at 2:51 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>>>
>>>>>> I can build a non-kokkos PETSc here (Cori/GPU) but I get this
>>>>>> error with Kokkos.
>>>>>> Any suggestions?
>>>>>> Thanks,
>>>>>> Mark
>>>>>>
>>>>>> =============================================================================================
>>>>>>
>>>>>>
>>>>>>
>>>>>> =============================================================================================
>>>>>>
>>>>>>
>>>>>>                                                                 Trying to
>>>>>> download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING
>>>>>>
>>>>>>
>>>>>>
>>>>>>  =============================================================================================
>>>>>>
>>>>>>
>>>>>>
>>>>>> =============================================================================================
>>>>>>
>>>>>>
>>>>>>                                                                 Trying to
>>>>>> download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING
>>>>>>
>>>>>>
>>>>>>
>>>>>>  =============================================================================================
>>>>>>
>>>>>>
>>>>>>
>>>>>> =============================================================================================
>>>>>>
>>>>>>
>>>>>>                                                                 Trying to
>>>>>> download https://bitbucket.org/petsc/pkg-sowing/get/v1.1.26-p1.tar.gz
>>>>>> for SOWING
>>>>>>
>>>>>>
>>>>>>  =============================================================================================
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> *******************************************************************************
>>>>>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>>>>> for details):
>>>>>>
>>>>>> -------------------------------------------------------------------------------
>>>>>> Error during download/extract/detection of SOWING:
>>>>>> Unable to clone sowing
>>>>>> Could not execute "['git clone
>>>>>> https://bitbucket.org/petsc/pkg-sowing.git
>>>>>> /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.sowing']":
>>>>>> Cloning into
>>>>>> '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.sowing'...
>>>>>> fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/':
>>>>>> The requested URL returned error: 503
>>>>>> Unable to download package SOWING from: git://
>>>>>> https://bitbucket.org/petsc/pkg-sowing.git
>>>>>> * If URL specified manually - perhaps there is a typo?
>>>>>> * If your network is disconnected - please reconnect and rerun
>>>>>> ./configure
>>>>>> * Or perhaps you have a firewall blocking the download
>>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>>> ./configure will instruct you what packages to download manually
>>>>>> * or you can download the above URL manually, to /yourselectedlocation
>>>>>>   and use the configure option:
>>>>>>   --download-sowing=/yourselectedlocation
>>>>>>     Unable to clone sowing
>>>>>> Could not execute "['git clone
>>>>>> https://bitbucket.org/petsc/pkg-sowing.git
>>>>>> /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.sowing']":
>>>>>> Cloning into
>>>>>> '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.sowing'...
>>>>>> fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/':
>>>>>> The requested URL returned error: 503
>>>>>> Unable to download package SOWING from: git://
>>>>>> https://bitbucket.org/petsc/pkg-sowing.git
>>>>>> * If URL specified manually - perhaps there is a typo?
>>>>>> * If your network is disconnected - please reconnect and rerun
>>>>>> ./configure
>>>>>> * Or perhaps you have a firewall blocking the download
>>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>>> ./configure will instruct you what packages to download manually
>>>>>> * or you can download the above URL manually, to /yourselectedlocation
>>>>>>   and use the configure option:
>>>>>>   --download-sowing=/yourselectedlocation
>>>>>>     file could not be opened successfully
>>>>>> Downloaded package SOWING from:
>>>>>> https://bitbucket.org/petsc/pkg-sowing/get/v1.1.26-p1.tar.gz is not
>>>>>> a tarball.
>>>>>> [or installed python cannot process compressed files]
>>>>>> * If you are behind a firewall - please fix your proxy and rerun
>>>>>> ./configure
>>>>>>   For example at LANL you may need to set the environmental variable
>>>>>> http_proxy (or HTTP_PROXY?) to  http://proxyout.lanl.gov
>>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>>> ./configure will instruct you what packages to download manually
>>>>>> * or you can download the above URL manually, to
>>>>>> /yourselectedlocation/v1.1.26-p1.tar.gz
>>>>>>   and use the configure option:
>>>>>>   --download-sowing=/yourselectedlocation/v1.1.26-p1.tar.gz
>>>>>>
>>>>>> *******************************************************************************
>>>>>> <configure.log>
>>>>>>
>>>>>>
>>>>>>
>>>>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20210516/993107ad/attachment-0001.html>


More information about the petsc-users mailing list