[petsc-users] Compilation error of test program: "MatDenseGetArray" was not declared in this scope
Roland Richter
roland.richter at ntnu.no
Tue Jan 19 08:33:40 CST 2021
Yes, that's it, thanks for the fast help!
Regards,
Roland
Am 19.01.21 um 14:55 schrieb Matthew Knepley:
> On Tue, Jan 19, 2021 at 7:28 AM Roland Richter <roland.richter at ntnu.no
> <mailto:roland.richter at ntnu.no>> wrote:
>
> Hei,
>
> I just encountered an issue which I can not solve on my own. I
> wrote a test program on my development machine, and compilation
> works fine, but when trying to compile it on the production
> machine compilation fails with
>
> I believe your production machine has PETSc version < 3.14, since
> MatDenseGetArrayWrite() was not introduced until 3,14.
>
> Thanks,
>
> Matt
>
> /[ 25%] Building CXX object
> CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o//
> ///share/apps/software/OpenMPI/3.1.3-gcccuda-2019a/bin/mpicxx
> -DBOOST_NO_AUTO_PTR -DUSE_CUDA -DUSE_PHYSICS_VARIABLES
> -Dtest_program_EXPORTS
> -I~/work_directory/full_physics/Test-Controller/library/include
> -I~/work_directory/full_physics/physics_variables/include
> -I~/local_opt_GCC7/interp2d/include -I/usr/include/eigen3
> -I/share/apps/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include
> -I/share/apps/software/MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/imkl/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/include
> -isystem ~/local_opt_GCC7/dealii/include -isystem
> ~/local_opt_GCC7/dealii/include/deal.II/bundled -isystem
> /share/apps/software/Core/icc/2019.1.144-GCC-8.2.0-2.31.1/tbb/include
> -isystem ~/local_opt_GCC7/boost/include -isystem
> ~/local_opt_GCC7/petsc/include -isystem
> ~/local_opt_GCC7/trilinos/include -isystem
> ~/local_opt_GCC7/arrayfire/include -isystem
> /share/apps/software/imkl/2019.5.281-iimpi-2019b/mkl/include
> -isystem ~/local_opt_GCC7/suitesparse/include -isystem
> /share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/HDF5/1.10.5/include
> -isystem
> /share/apps/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include
> -isystem
> /share/apps/software/Compiler/GCCcore/8.2.0/Szip/2.1.1/include
> -isystem
> /share/apps/software/Compiler/GCC/8.2.0-2.31.1/CUDA/10.1.105/include
> -isystem
> /share/apps/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/include
> -isystem ~/local_opt_GCC7/adol-c/include -isystem
> ~/local_opt_GCC7/p4est/include -isystem
> ~/local_opt_GCC7/slepc/include -isystem
> ~/local_opt_GCC7/armadillo/include -isystem
> /share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/FFTW/3.3.8/include
> -march=native -fopenmp-simd -fPIC -flto -march=native -fopenmp
> -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing -DMKL_LP64
> -m64 -O3 -DNDEBUG -fPIC -pedantic -fPIC -Wall -Wextra
> -Wmissing-braces -Woverloaded-virtual -Wpointer-arith
> -Wsign-compare -Wswitch -Wsynth -Wwrite-strings -Wno-placement-new
> -Wno-literal-suffix -Wno-psabi -Wno-class-memaccess -fopenmp-simd
> -march=native -mavx -Wno-unused-local-typedefs -O2 -funroll-loops
> -funroll-all-loops -fstrict-aliasing -Werror -flto -std=gnu++17
> -MD -MT
> CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -MF
> CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o.d -o
> CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -c
> ~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
> In member function 'void tester_helper::nonlinear_step(double&,
> double)'://
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
> error: 'MatDenseGetArrayWrite' was not declared in this scope//
> // MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
> note: suggested alternative: 'MatDenseGetArrayRead'//
> // MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~//
> // MatDenseGetArrayRead//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
> error: 'MatDenseRestoreArrayWrite' was not declared in this scope//
> // MatDenseRestoreArrayWrite (petsc_field.pc_spectral,
> &write_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~~~~~//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
> note: suggested alternative: 'MatDenseRestoreArrayRead'//
> // MatDenseRestoreArrayWrite (petsc_field.pc_spectral,
> &write_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~~~~~//
> // MatDenseRestoreArrayRead//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
> In member function 'void
> tester_helper::nonlinear_step_material_transition()'://
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
> error: 'MatDenseGetArrayWrite' was not declared in this scope//
> // MatDenseGetArrayWrite(split_mat, &write_mat_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
> note: suggested alternative: 'MatDenseGetArrayRead'//
> // MatDenseGetArrayWrite(split_mat, &write_mat_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~//
> // MatDenseGetArrayRead//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
> error: 'MatDenseRestoreArrayWrite' was not declared in this scope//
> // MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~~~~~//
> //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
> note: suggested alternative: 'MatDenseRestoreArrayRead'//
> // MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);//
> // ^~~~~~~~~~~~~~~~~~~~~~~~~//
> // MatDenseRestoreArrayRead/
>
> Where does that error come from, and how can I fix it/circumvent
> it? I compile the program using gcc 8.2.0 (including mpi-wrappers)
> on the production machine, and with gcc 9.3.1 on the dev machine.
>
> Thanks,
>
> regards,
>
> Roland
>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which
> their experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <http://www.cse.buffalo.edu/~knepley/>
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