[petsc-users] Newbie question: Strange failure when calling PetscIntView from slepc application

dazza simplythebest sayosale at hotmail.com
Fri Apr 9 02:43:07 CDT 2021


Dear All,
              I am getting a puzzling 'Segmentation Violation' error when I try to
write out an integer array using PetscIntView in a Fortran code. I have written the small
code below which reproduces the problem. All this code does is create
 a PetscInt array, initialise this array, then try to write it out to screen.
Interestingly PetscIntView does seem to correctly write out all the values to
the screen (which agree with a direct write), but then fails before it can return to
the main program (see output pasted in below).

I think I must be doing something quite silly, but just
can't quite see what it is! Any suggestions will be very welcome.
  Many thanks,
                   Dan

Code:

      MODULE ALL_STAB_ROUTINES
      IMPLICIT NONE
      CONTAINS

      SUBROUTINE  WRITE_ROWS_TO_PETSC_MATRIX( ISIZE, JALOC)
#include <slepc/finclude/slepceps.h>
      use slepceps
      IMPLICIT NONE
      PetscInt, INTENT (IN) ::  ISIZE
      PetscInt, INTENT(INOUT), DIMENSION(0:ISIZE-1)  :: JALOC
      PetscErrorCode   :: ierr

      write(*,*)'check 02: ',shape(jaloc),lbound(jaloc),ubound(jaloc)
      write(*,*)jaloc

      write(*,*)'now for PetscIntView ...'
      call PetscIntView(ISIZE,JALOC, PETSC_VIEWER_STDOUT_WORLD)
      CHKERRA(ierr)

      END SUBROUTINE WRITE_ROWS_TO_PETSC_MATRIX

      END MODULE ALL_STAB_ROUTINES

      program  stabbo
      USE  MPI
#include <slepc/finclude/slepceps.h>
      use slepceps
      USE ALL_STAB_ROUTINES
      IMPLICIT NONE
      PetscInt, ALLOCATABLE, DIMENSION(:) :: JALOC
      PetscInt, PARAMETER ::  ISIZE = 10
      PetscInt, parameter ::  FOUR=4
      PetscErrorCode   :: ierr_pets
      call SlepcInitialize(PETSC_NULL_CHARACTER,ierr_pets)

      ALLOCATE(JALOC(0:ISIZE-1))
      JALOC = FOUR
      write(*,*)'check 01: ',shape(jaloc),lbound(jaloc),ubound(jaloc)
      CALL WRITE_ROWS_TO_PETSC_MATRIX(ISIZE, JALOC)
      CALL SlepcFinalize(ierr_pets)
      END PROGRAM STABBO

Output:

dan at super01 /data/work/rotplane/omega_to_zero/stability/test/tmp10/tmp3 $ mpiexec.hydra -n 1 ./trashy.exe
 check 01:           10           0           9
 check 02:           10           0           9
                     4                     4                     4
                     4                     4                     4
                     4                     4                     4
                     4
 now for PetscIntView ...
0: 4 4 4 4 4 4 4 4 4 4
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames ------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.14.5, Mar 03, 2021
[0]PETSC ERROR: ./trashy.exe on a  named super01 by darren Fri Apr  9 16:28:25 2021
[0]PETSC ERROR: Configure options --package-prefix-hash=/home/darren/petsc-hash-pkgs --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-mpiexec=mpiexec.hydra COPTFLAGS="-g -O" FOPTFLAGS="-g -O" CXXOPTFLAGS="-g -O" --with-64-bit-indices=1 --with-scalar-type=complex --with-precision=double --with-debugging=1 --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2020.0.166/linux/mkl --with-mkl_pardiso-dir=/opt/intel/compilers_and_libraries_2020.0.166/linux/mkl --with-mkl_cpardiso-dir=/opt/intel/compilers_and_libraries_2020.0.166/linux/mkl --download-mumps --download-scalapack --download-cmake PETSC_ARCH=arch-ci-linux-intel-mkl-cmplx-ilp64-dbg-ftn-with-external
[0]PETSC ERROR: #1 User provided function() line 0 in  unknown file
[0]PETSC ERROR: Checking the memory for corruption.
Abort(50176059) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 50176059) - process 0

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