[petsc-users] Problems configuring with PIC

[Satish Balay]

Please remove --with-shared-libraries=0 option - and rerun configure

Satish

On Wed, 4 Nov 2020, Gutheil, Inge wrote:

> Dear PETSc team,
> 
> I have problems configuring PETSc with PIC which I need for later configuring petsc4py.
> 
> Although I configure with --with-shared-libraries:
> 
> 
> Starting configure run at Wed, 04 Nov 2020 14:53:36 +0100
> 
> Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --prefix=/p/software/juwels/stages/Devel-2020/software/PETSc/3.14-gpsmkl-2020 --with-large-file-io --with-cxx-dialect=C++11 --with-shared-libraries --download-superlu=1 --download-chaco=1 --download-parms=1 --download-spai=1 --download-superlu_dist=1 --download-spooles=1 --with-cc=mpicc --with-cxx=mpicxx --with-c++-support --with-fc=mpif90 --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC" --with-mpi=1 --with-build-step-np=40 --with-shared-libraries=0 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-fftw=1 --with-fftw-include=/gpfs/software/juwels/stages/Devel-2020/software/imkl/2020.2.254-gpsmpi-2020/mkl/include/fftw --with-fftw-lib="[/gpfs/software/juwels/stages/Devel-2020/software/imkl/2020.2.254-gpsmpi-2020/mkl/lib/intel64/libfftw3xc_gnu_pic.a,libfftw3x_cdft_lp64_pic.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_gf_lp64.a,libmkl_sequential.a,libmkl_core.a,libgfortran.a]" --with-scalapack=1 --with-scalapack-include=/gpfs/software/juwels/stages/Devel-2020/software/imkl/2020.2.254-gpsmpi-2020/mkl/include --with-scalapack-lib="[/gpfs/software/juwels/stages/Devel-2020/software/imkl/2020.2.254-gpsmpi-2020/mkl/lib/intel64/libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_gf_lp64.a,libmkl_sequential.a,libmkl_core.a,libgfortran.a]" --with-blaslapack-lib="[/gpfs/software/juwels/stages/Devel-2020/software/imkl/2020.2.254-gpsmpi-2020/mkl/lib/intel64/libmkl_gf_lp64.a,libmkl_sequential.a,libmkl_core.a,libgfortran.a]" --with-hdf5=1 --with-hdf5-dir=/gpfs/software/juwels/stages/Devel-2020/software/HDF5/1.10.6-gpsmpi-2020 --with-metis=1 --with-metis-dir=/gpfs/software/juwels/stages/Devel-2020/software/METIS/5.1.0-GCC-9.3.0 --with-parmetis=1 --with-parmetis-dir=/p/software/juwels/stages/Devel-2020/software/ParMETIS/4.0.3-gpsmpi-2020 --with-hypre=1 --with-hypre-dir=/p/software/juwels/stages/Devel-2020/software/Hypre/2.20.0-gpsmkl-2020 --with-mumps=1 --with-mumps-dir=/p/software/juwels/stages/Devel-2020/software/MUMPS/5.3.4-gpsmkl-2020 --with-sundials=1 --with-sundials-dir=/p/software/juwels/stages/Devel-2020/software/sundials/5.4.0-gpsmkl-2020
> 
> Working directory: /dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0
> 
> 
> 
> I always get
> 
> 
> 
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
> 
> -------------------------------------------------------------------------------
> 
> Cannot determine compiler PIC flags if shared libraries is turned off
> 
> Either run using --with-shared-libraries or --with-pic=0 and supply the compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS
> 
> *******************************************************************************
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/configure.py", line 452, in petsc_configure
> 
>     framework.configure(out = sys.stdout)
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/framework.py", line 1251, in configure
> 
>     self.processChildren()
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/framework.py", line 1240, in processChildren
> 
>     self.serialEvaluation(self.childGraph)
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/framework.py", line 1215, in serialEvaluation
> 
>     child.configure()
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/setCompilers.py", line 1969, in configure
> 
>     self.executeTest(self.checkPIC)
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/base.py", line 140, in executeTest
> 
>     ret = test(*args,**kargs)
> 
>   File "/dev/shm/mathprod/PETSc/3.14/gpsmkl-2020/petsc-3.14.0/config/BuildSystem/config/setCompilers.py", line 1272, in checkPIC
> 
>     raise RuntimeError("Cannot determine compiler PIC flags if shared libraries is turned off\nEither run using --with-shared-libraries or --with-pic=0 and supply the compiler PIC flag via CFLAGS, CXXXFLAGS, and FCFLAGS\n")
> 
> I don't know what I am doing wrong.
> Thanks for your help,
> 
> Regards
> Inge Gutheil
> 
> --
> Inge Gutheil
> Juelich Supercomputing Centre
> Forschungszentrum Jülich GmbH
> 52425 Jülich
> Germany
> 
> 
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