[petsc-users] error when configuring petsc with Intel Compilers 2019 update 3

[Junchao Zhang]

Please be aware that Intel MPI 2019 u3 has a lot of bugs when you look into
a bug. You better upgrade Intel Parallel Studio to the latest version.

--Junchao Zhang


On Tue, May 26, 2020 at 2:41 PM Alfredo Jaramillo <ajaramillopalma at gmail.com>
wrote:

> Thanks for the tip! I will look into it.
>
> regards
> Alfredo
>
>
> On Tue, May 26, 2020 at 4:39 PM Matthew Knepley <knepley at gmail.com> wrote:
>
>> On Tue, May 26, 2020 at 3:15 PM Alfredo Jaramillo <
>> ajaramillopalma at gmail.com> wrote:
>>
>>> Thank you Matthew!
>>>
>>> I need this version to work on my computer in order to look for a bug
>>> that appears in a cluster.
>>> I'm not sure how to make it work, I will try with an older Linux
>>> distribution.
>>>
>>
>> If you are just looking for a bug, maybe a Docker container would allow
>> easier experimentation?
>>
>>   Thanks,
>>
>>      Matt
>>
>>
>>> regards
>>> Alfredo
>>>
>>> On Tue, May 26, 2020 at 1:02 PM Matthew Knepley <knepley at gmail.com>
>>> wrote:
>>>
>>>> On Tue, May 26, 2020 at 11:23 AM Alfredo Jaramillo <
>>>> ajaramillopalma at gmail.com> wrote:
>>>>
>>>>> hello dear PETSc team,
>>>>>
>>>>> I'm trying to install PETSc with the 2019 update 3 Intel Parallel
>>>>> Studio. When starting the configuration process there appears the next
>>>>> message:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> *TESTING: checkFortran90Array from
>>>>> config.compilersFortran(/opt/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:211)*******************************************************************************
>>>>>        UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>>>>> details):-------------------------------------------------------------------------------Could
>>>>> not check Fortran pointer
>>>>> arguments********************************************************************************
>>>>>
>>>>> the configuration log is attached to this message
>>>>>
>>>>> I would be very thankful of any kind help on this matter
>>>>>
>>>>
>>>> It seems like headers in /usr/include are conflicting with your new
>>>> compiler.
>>>>
>>>> Executing: mpiicc -c -o
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.o
>>>> -I/tmp/petsc-n__j58ih/config.libraries
>>>> -I/tmp/petsc-n__j58ih/config.setCompilers
>>>> -I/tmp/petsc-n__j58ih/config.compilers
>>>> -I/tmp/petsc-n__j58ih/config.utilities.closure
>>>> -I/tmp/petsc-n__j58ih/config.compilersFortran  -fPIC -O3 -march=native
>>>> -mtune=native  /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c
>>>> Possible ERROR while running compiler: exit code 2
>>>> stderr:
>>>> In file included from /usr/include/bits/floatn.h(119),
>>>>                  from /usr/include/stdlib.h(55),
>>>>                  from
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>>>> /usr/include/bits/floatn-common.h(214): error: invalid combination of
>>>> type specifiers
>>>>   typedef float _Float32;
>>>>                 ^
>>>>
>>>> In file included from /usr/include/bits/floatn.h(119),
>>>>                  from /usr/include/stdlib.h(55),
>>>>                  from
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>>>> /usr/include/bits/floatn-common.h(251): error: invalid combination of
>>>> type specifiers
>>>>   typedef double _Float64;
>>>>                  ^
>>>>
>>>> In file included from /usr/include/bits/floatn.h(119),
>>>>                  from /usr/include/stdlib.h(55),
>>>>                  from
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>>>> /usr/include/bits/floatn-common.h(268): error: invalid combination of
>>>> type specifiers
>>>>   typedef double _Float32x;
>>>>                  ^
>>>>
>>>> In file included from /usr/include/bits/floatn.h(119),
>>>>                  from /usr/include/stdlib.h(55),
>>>>                  from
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>>>> /usr/include/bits/floatn-common.h(285): error: invalid combination of
>>>> type specifiers
>>>>   typedef long double _Float64x;
>>>>                       ^
>>>>
>>>> compilation aborted for
>>>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c (code 2)
>>>> Source:
>>>> #include "confdefs.h"
>>>> #include "conffix.h"
>>>> #include<stdio.h>
>>>> #include <stdlib.h>
>>>> void f90arraytest_(void* a1, void* a2,void* a3, void* i)
>>>> {
>>>>   printf("arrays [%p %p %p]\n",a1,a2,a3);
>>>>   fflush(stdout);
>>>>   return;
>>>> }
>>>> void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void*
>>>> p2, void* p3)
>>>> {
>>>>   printf("arrays [%p %p %p]\n",a1,a2,a3);
>>>>   if ((p1 == p3) && (p1 != p2)) {
>>>>     printf("pointers match! [%p %p] [%p]\n",p1,p3,p2);
>>>>     fflush(stdout);
>>>>   } else {
>>>>     printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2);
>>>>     fflush(stdout);
>>>>     exit(111);
>>>>   }
>>>>   return;
>>>> }
>>>>
>>>>   Thanks,
>>>>
>>>>      Matt
>>>>
>>>> Alfredo
>>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their
>>>> experiments is infinitely more interesting than any results to which their
>>>> experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>> https://www.cse.buffalo.edu/~knepley/
>>>> <http://www.cse.buffalo.edu/~knepley/>
>>>>
>>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20200526/8a7f51c1/attachment.html>