[petsc-users] error when configuring petsc with Intel Compilers 2019 update 3

[Matthew Knepley]

On Tue, May 26, 2020 at 3:15 PM Alfredo Jaramillo <ajaramillopalma at gmail.com>
wrote:

> Thank you Matthew!
>
> I need this version to work on my computer in order to look for a bug that
> appears in a cluster.
> I'm not sure how to make it work, I will try with an older Linux
> distribution.
>

If you are just looking for a bug, maybe a Docker container would allow
easier experimentation?

  Thanks,

     Matt


> regards
> Alfredo
>
> On Tue, May 26, 2020 at 1:02 PM Matthew Knepley <knepley at gmail.com> wrote:
>
>> On Tue, May 26, 2020 at 11:23 AM Alfredo Jaramillo <
>> ajaramillopalma at gmail.com> wrote:
>>
>>> hello dear PETSc team,
>>>
>>> I'm trying to install PETSc with the 2019 update 3 Intel Parallel
>>> Studio. When starting the configuration process there appears the next
>>> message:
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> *TESTING: checkFortran90Array from
>>> config.compilersFortran(/opt/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:211)*******************************************************************************
>>>        UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>>> details):-------------------------------------------------------------------------------Could
>>> not check Fortran pointer
>>> arguments********************************************************************************
>>>
>>> the configuration log is attached to this message
>>>
>>> I would be very thankful of any kind help on this matter
>>>
>>
>> It seems like headers in /usr/include are conflicting with your new
>> compiler.
>>
>> Executing: mpiicc -c -o
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.o
>> -I/tmp/petsc-n__j58ih/config.libraries
>> -I/tmp/petsc-n__j58ih/config.setCompilers
>> -I/tmp/petsc-n__j58ih/config.compilers
>> -I/tmp/petsc-n__j58ih/config.utilities.closure
>> -I/tmp/petsc-n__j58ih/config.compilersFortran  -fPIC -O3 -march=native
>> -mtune=native  /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c
>> Possible ERROR while running compiler: exit code 2
>> stderr:
>> In file included from /usr/include/bits/floatn.h(119),
>>                  from /usr/include/stdlib.h(55),
>>                  from
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>> /usr/include/bits/floatn-common.h(214): error: invalid combination of
>> type specifiers
>>   typedef float _Float32;
>>                 ^
>>
>> In file included from /usr/include/bits/floatn.h(119),
>>                  from /usr/include/stdlib.h(55),
>>                  from
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>> /usr/include/bits/floatn-common.h(251): error: invalid combination of
>> type specifiers
>>   typedef double _Float64;
>>                  ^
>>
>> In file included from /usr/include/bits/floatn.h(119),
>>                  from /usr/include/stdlib.h(55),
>>                  from
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>> /usr/include/bits/floatn-common.h(268): error: invalid combination of
>> type specifiers
>>   typedef double _Float32x;
>>                  ^
>>
>> In file included from /usr/include/bits/floatn.h(119),
>>                  from /usr/include/stdlib.h(55),
>>                  from
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c(4):
>> /usr/include/bits/floatn-common.h(285): error: invalid combination of
>> type specifiers
>>   typedef long double _Float64x;
>>                       ^
>>
>> compilation aborted for
>> /tmp/petsc-n__j58ih/config.compilersFortran/conftest.c (code 2)
>> Source:
>> #include "confdefs.h"
>> #include "conffix.h"
>> #include<stdio.h>
>> #include <stdlib.h>
>> void f90arraytest_(void* a1, void* a2,void* a3, void* i)
>> {
>>   printf("arrays [%p %p %p]\n",a1,a2,a3);
>>   fflush(stdout);
>>   return;
>> }
>> void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void*
>> p2, void* p3)
>> {
>>   printf("arrays [%p %p %p]\n",a1,a2,a3);
>>   if ((p1 == p3) && (p1 != p2)) {
>>     printf("pointers match! [%p %p] [%p]\n",p1,p3,p2);
>>     fflush(stdout);
>>   } else {
>>     printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2);
>>     fflush(stdout);
>>     exit(111);
>>   }
>>   return;
>> }
>>
>>   Thanks,
>>
>>      Matt
>>
>> Alfredo
>>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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