[petsc-users] HDF5 errors

Boyce Griffith boyceg at gmail.com
Fri Mar 20 13:39:57 CDT 2020


Homebrew just updated my hdf5, and now I am getting some errors from the HDF5 viewer in maint:

/Users/boyceg/sfw/petsc/petsc-maint/src/sys/classes/viewer/impls/hdf5/hdf5v.c:1064:73: error: too few arguments to function call, expected 5, have 4
    PetscStackCallHDF5(H5Oget_info_by_name,(h5, name, &info, H5P_DEFAULT));
                       ~~~~~~~~~~~~~~~~~~~                              ^
/Users/boyceg/sfw/petsc/petsc-maint/include/petsc/private/viewerhdf5impl.h:11:42: note: expanded from macro 'PetscStackCallHDF5'
    PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \
                                    ~~~~ ^
/usr/local/include/H5Opublic.h:188:8: note: 'H5Oget_info_by_name3' declared here
H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo,
       ^
1 error generated.
gmake[2]: *** [gmakefile:156: darwin-dbg/obj/sys/classes/viewer/impls/hdf5/hdf5v.o] Error 1



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