[petsc-users] Fwd: Running moose/scripts/update_and_rebuild_petsc.sh on HPC
Fande Kong
fdkong.jd at gmail.com
Thu Jan 30 14:49:47 CST 2020
Hi All,
It looks like a bug for me.
PETSc was still trying to detect lgrind even we set "--with-lgrind=0". The
configuration log is attached. Any way to disable lgrind detection.
Thanks,
Fande
---------- Forwarded message ---------
From: Tomas Mondragon <tom.alex.mondragon at gmail.com>
Date: Thu, Jan 30, 2020 at 9:54 AM
Subject: Re: Running moose/scripts/update_and_rebuild_petsc.sh on HPC
To: moose-users <moose-users at googlegroups.com>
Configuration log is attached
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================================================================================
================================================================================
Starting configure run at Fri, 24 Jan 2020 17:01:13 -0600
Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-hypre=downloaded_thirdParty_tarballs/hypre-93baaa8c9.tar.gz --with-debugging=no --with-shared-libraries=1 --download-fblaslapack=downloaded_thirdParty_tarballs/fblaslapack-v3.4.2-p2.tar.gz --download-metis=downloaded_thirdParty_tarballs/metis-v5.1.0-p7.tar.gz --download-ptscotch=downloaded_thirdParty_tarballs/scotch-v6.0.9.tar.gz --download-parmetis=downloaded_thirdParty_tarballs/parmetis-v4.0.3.tar.gz --download-superlu_dist=downloaded_thirdParty_tarballs/superLU-DIST-v6.2.0.tar.gz --download-mumps=downloaded_thirdParty_tarballs/mumps-v5.2.1-p2.tar.gz --download-scalapack=downloaded_thirdParty_tarballs/scalapack-v2.1.0-p1.tar.gz --download-slepc=downloaded_thirdParty_tarballs/slepc-bf89b9d.tar.gz --with-mpi=1 --with-cxx-dialect=C++11 --with-fortran-bindings=0 --with-sowing=0 --with-batch=1 --with-cudac=0 --with-lgrind=0
Working directory: /p/work2/tmondrag/moose/petsc
Machine platform:
('Linux', 'r20i4n17', '4.12.14-95.29-default', '#1 SMP Thu Aug 1 15:34:33 UTC 2019 (47e48a4)', 'x86_64', 'x86_64')
Python version:
2.7.13 (default, Jan 11 2017, 10:56:06) [GCC]
================================================================================
================================================================================
TEST configureExternalPackagesDir from config.framework(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/framework.py:911)
TESTING: configureExternalPackagesDir from config.framework(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/framework.py:911)
================================================================================
TEST configureDebuggers from config.utilities.debuggers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/debuggers.py:21)
TESTING: configureDebuggers from config.utilities.debuggers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/debuggers.py:21)
Find a default debugger and determine its arguments
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/gdb...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/gdb...not found
Checking for program /usr/local/krb5/bin/gdb...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/gdb...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/gdb...not found
Checking for program /opt/clmgr/sbin/gdb...not found
Checking for program /opt/clmgr/bin/gdb...not found
Checking for program /opt/sgi/sbin/gdb...not found
Checking for program /opt/sgi/bin/gdb...not found
Checking for program /usr/local/bin/gdb...not found
Checking for program /usr/bin/gdb...found
Defined make macro "GDB" to "/usr/bin/gdb"
Defined "USE_DEBUGGER" to ""gdb""
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Defined make macro "DSYMUTIL" to "true"
child config.utilities.debuggers 0.009440
================================================================================
TEST configureDirectories from PETSc.options.petscdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/petscdir.py:23)
TESTING: configureDirectories from PETSc.options.petscdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/petscdir.py:23)
Checks PETSC_DIR and sets if not set
Version Information:
#define PETSC_VERSION_RELEASE 0
#define PETSC_VERSION_MAJOR 3
#define PETSC_VERSION_MINOR 12
#define PETSC_VERSION_SUBMINOR 3
#define PETSC_VERSION_PATCH 0
#define PETSC_VERSION_DATE "unknown"
#define PETSC_VERSION_GIT "unknown"
#define PETSC_VERSION_DATE_GIT "unknown"
#define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \
#define PETSC_VERSION_ PETSC_VERSION_EQ
#define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \
#define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \
#define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \
#define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \
child PETSc.options.petscdir 0.004710
================================================================================
TEST getDatafilespath from PETSc.options.dataFilesPath(/p/work2/tmondrag/moose/petsc/config/PETSc/options/dataFilesPath.py:29)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/p/work2/tmondrag/moose/petsc/config/PETSc/options/dataFilesPath.py:29)
Checks what DATAFILESPATH should be
child PETSc.options.dataFilesPath 0.000588
================================================================================
TEST configureGit from config.sourceControl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureGit from config.sourceControl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/sourceControl.py:24)
Find the Git executable
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/git...found
Defined make macro "GIT" to "git"
Running Executable WITHOUT threads to time it out
Executing: git --version
stdout: git version 2.4.4
child config.sourceControl 0.004862
================================================================================
TEST configureInstallationMethod from PETSc.options.petscclone(/p/work2/tmondrag/moose/petsc/config/PETSc/options/petscclone.py:20)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/p/work2/tmondrag/moose/petsc/config/PETSc/options/petscclone.py:20)
lib/petsc/bin/maint exists. This appears to be a repository clone
.git directory exists
Running Executable WITHOUT threads to time it out
Executing: ['git', 'describe', '--match=v*']
stdout: v3.12.3-632-gaf591a4
Running Executable WITHOUT threads to time it out
Executing: ['git', 'log', '-1', '--pretty=format:%H']
stdout: af591a4651ec8b1ecff5c03491370c0e4ac5c3a7
Running Executable WITHOUT threads to time it out
Executing: ['git', 'log', '-1', '--pretty=format:%ci']
stdout: 2020-01-24 13:29:59 -0600
Running Executable WITHOUT threads to time it out
Executing: ['git', 'branch']
stdout:
* (HEAD detached from 5ea3abf)
master
Defined "VERSION_GIT" to ""v3.12.3-632-gaf591a4""
Defined "VERSION_DATE_GIT" to ""2020-01-24 13:29:59 -0600""
Defined "VERSION_BRANCH_GIT" to ""(HEAD detached from 5ea3abf)""
child PETSc.options.petscclone 0.053460
================================================================================
TEST setNativeArchitecture from PETSc.options.arch(/p/work2/tmondrag/moose/petsc/config/PETSc/options/arch.py:31)
TESTING: setNativeArchitecture from PETSc.options.arch(/p/work2/tmondrag/moose/petsc/config/PETSc/options/arch.py:31)
================================================================================
TEST configureArchitecture from PETSc.options.arch(/p/work2/tmondrag/moose/petsc/config/PETSc/options/arch.py:43)
TESTING: configureArchitecture from PETSc.options.arch(/p/work2/tmondrag/moose/petsc/config/PETSc/options/arch.py:43)
Checks PETSC_ARCH and sets if not set
No previous hashfile found
Setting hashfile: arch-moose/lib/petsc/conf/configure-hash
Deleting configure hash file: arch-moose/lib/petsc/conf/configure-hash
Unable to delete configure hash file: arch-moose/lib/petsc/conf/configure-hash
child PETSc.options.arch 0.077474
================================================================================
TEST setInstallDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:35)
TESTING: setInstallDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:35)
setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH
Defined make macro "PREFIXDIR" to "/p/home/tmondrag/WORK/moose/petsc/arch-moose"
================================================================================
TEST saveReconfigure from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:80)
TESTING: saveReconfigure from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:80)
================================================================================
TEST cleanConfDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:73)
TESTING: cleanConfDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:73)
================================================================================
TEST configureInstallDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:57)
TESTING: configureInstallDir from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:57)
Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location
Changed persistence directory to /p/home/tmondrag/WORK/moose/petsc/arch-moose/lib/petsc/conf
================================================================================
TEST restoreReconfigure from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:93)
TESTING: restoreReconfigure from PETSc.options.installDir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/installDir.py:93)
child PETSc.options.installDir 0.004305
================================================================================
TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:15)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:15)
================================================================================
TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:22)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/p/work2/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:22)
child PETSc.options.externalpackagesdir 0.000327
================================================================================
TEST configureCLanguage from PETSc.options.languages(/p/work2/tmondrag/moose/petsc/config/PETSc/options/languages.py:27)
TESTING: configureCLanguage from PETSc.options.languages(/p/work2/tmondrag/moose/petsc/config/PETSc/options/languages.py:27)
Choose whether to compile the PETSc library using a C or C++ compiler
C language is C
Defined "CLANGUAGE_C" to "1"
Defined make macro "CLANGUAGE" to "C"
child PETSc.options.languages 0.001302
================================================================================
TEST printEnvVariables from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1718)
TESTING: printEnvVariables from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1718)
**** printenv ****
CPPFLAGS=-I/app/unsupported/COST/tcltk/8.6.4/gnu//include
I_MPI_CC=gcc
ARCHIVE_HOST=gold.erdc.hpc.mil
LESS=-M -I -R
PBS_NODENUM=0
ENVIRONMENT=BATCH
PBS_O_LANG=en_US.UTF-8
XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB
BASH_FUNC_module%%=() { eval `/usr/share/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}
BC_ACCELERATOR_NODE_CORES=28
KRB5HOME=/usr/local/krb5
SHELL=/bin/bash
MPI_LAUNCH_TIMEOUT=300
BC_STANDARD_NODE_CORES=36
XDG_DATA_DIRS=/usr/share
BC_NODE_TYPE=STANDARD
HISTSIZE=1000
CSI_HOME=/app
LESS_ADVANCED_PREPROCESSOR=no
MANPATH=/app/unsupported/COST/tcltk/8.6.4/gnu//man:/usr/local/krb5/share/man:/p/home/apps/hpe/mpt-2.19/man:/p/home/apps/gnu_compiler/7.2.0/share/man:/usr/local/man:/usr/share/man:/opt/c3/man:/opt/pbs/default/share/man:/opt/clmgr/man:/opt/sgi/share/man:/app/unsupported/local/man:/usr/share/catman:/usr/catman:/usr/man
BC_BIGMEM_NODE_CORES=32
JAVA_HOME=/usr/lib64/jvm/java
PROFILEREAD=true
ARCHIVE_HOME=/erdc1/tmondrag
FPATH=/p/home/apps/hpe/mpt-2.19/include
MPIF90_F90=gfortran
SDK_HOME=/usr/lib64/jvm/java
PBS_NODEFILE=/var/spool/PBS/aux/3741873.jim10
CXX=g++
HOSTNAME=r20i4n17
PBS_QUEUE=itl
PETSC_ARCH=arch-moose
PBS_JOBID=3741873.jim10
MAIL=/var/spool/mail/tmondrag
MACHTYPE=x86_64-suse-linux
BC_PHI_NODE_CORES=0
JAVA_ROOT=/usr/lib64/jvm/java
MINICOM=-c on
CSHEDIT=emacs
LESSOPEN=lessopen.sh %s
PBS_O_LOGNAME=tmondrag
CPATH=/p/home/apps/hpe/mpt-2.19/include:/p/home/apps/gnu_compiler/7.2.0/include
USER=tmondrag
INPUTRC=/etc/inputrc
I_MPI_F77=gfortran
PET_HOME=/app/unsupported/PETtools/CE
CENTER=/gpfs/cwfs/tmondrag
LANGUAGE=en_US.UTF-8
SHLVL=2
ALSA_CONFIG_PATH=/etc/alsa-pulse.conf
CPU=x86_64
PETSC_DIR=/p/home/tmondrag/WORK/moose/scripts/../petsc
PBS_O_PATH=/app/unsupported/COST/git/2.4.4/gnu//bin:/app/unsupported/COST/tcltk/8.6.4/gnu//bin:/usr/local/krb5/bin:/p/home/apps/hpe/mpt-2.19/bin:/p/home/apps/gnu_compiler/7.2.0/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/local/krb5/bin:/usr/local/krb5/libexec:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/opt/c3/bin:/opt/pbs/default/bin:/sbin:/bin:/pbs/SLB:/app/unsupported/local/bin:/app/mpiutil
MODULESHOME=/usr/share/Modules/3.2.10
PBS_JOBCOOKIE=0000000076EA4204000000003DDB8E59
JAVA_BINDIR=/usr/lib64/jvm/java/bin
INFOPATH=/p/home/apps/gnu_compiler/7.2.0/share/info
DAAC_HOME=/app/DAAC
PBS_O_HOST=jim07.ib0.ice-x.erdc.hpc.mil
PROJECTS_HOME=/app/unsupported
PKG_CONFIG_PATH=/app/unsupported/COST/tcltk/8.6.4/gnu//lib/pkgconfig
GPG_TTY=not a tty
XNLSPATH=/usr/X11R6/lib/X11/nls
PBS_O_MAIL=/var/mail/tmondrag
TMPDIR=/p/work2/tmondrag
MODULEPATH=/app/unsupported/COST/modules:/p/home/apps/modulefiles/devel:/p/home/apps/modulefiles/apps:/p/home/apps/modulefiles/unsupported:/usr/share/modules:/usr/share/Modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/p/home/tmondrag/my_modules
BC_HOST=jim
PBS_O_SHELL=/bin/bash
XDG_CONFIG_DIRS=/etc/xdg
I_MPI_CXX=g++
OMP_NUM_THREADS=1
PBS_JOBDIR=/p/home/tmondrag
CMAKE_LIBRARY_PATH=/app/unsupported/COST/git/2.4.4/gnu//lib:/app/unsupported/COST/tcltk/8.6.4/gnu//lib
COST_MODULES_DIR=/app/unsupported/COST/modules
BC_NODE_ALLOC=1
COLORTERM=1
QEMU_AUDIO_DRV=pa
_LMFILES_=/p/home/apps/modulefiles/devel/compiler/gcc/7.2.0:/p/home/apps/modulefiles/devel/mpi/sgimpt/2.19:/p/home/apps/modulefiles/unsupported/costinit:/app/unsupported/COST/modules/tcltk/gnu/8.6.4:/app/unsupported/COST/modules/git/gnu/2.4.4
PAGER=less
ACCOUNT=ERDCV9100CDAG
MODULE_VERSION=3.2.10
I_MPI_F90=gfortran
HOME=/p/home/tmondrag
LD_LIBRARY_PATH=/app/unsupported/COST/dependencies/openssl/1.0.2n/gnu/lib:/app/unsupported/COST/dependencies/curl/7.43.0/gnu/lib:/app/unsupported/COST/git/2.4.4/gnu//lib:/app/unsupported/COST/tcltk/8.6.4/gnu//lib:/p/home/apps/hpe/mpt-2.19/lib:/p/home/apps/gnu_compiler/7.2.0/lib64
LANG=en_US.UTF-8
LIBRARY_PATH=/p/home/apps/hpe/mpt-2.19/lib
KRB5_HOME=/usr/local/krb5
NCPUS=1
G_BROKEN_FILENAMES=1
SAMPLES_HOME=/usr/local/cac/Example_Codes
F90=gfortran
PBS_O_WORKDIR=/p/home/tmondrag/WORK/moose
_=./configure
OSTYPE=linux
PBS_TASKNUM=1
PBS_ACCOUNT=ERDCV9100CDAG
PBS_O_SYSTEM=Linux
BC_MPI_TASKS_ALLOC=1
BC_CORES_PER_NODE=36
CC=gcc
NNTPSERVER=news
G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252
HOST=r20i4n17
MPT_VERSION=2.19
GIT_HOME=/app/unsupported/COST/git/2.4.4/gnu/
F77=gfortran
FROM_HEADER=
LESSCLOSE=lessclose.sh %s %s
PBS_MOMPORT=15003
C3_RSH=ssh -oConnectTimeout=10 -oForwardX11=no
MPICXX_CXX=g++
JRE_HOME=/usr/lib64/jvm/java/jre
MORE=-sl
WORKDIR2=/p/work1/tmondrag
PBS_O_HOME=/p/home/tmondrag
HOSTTYPE=x86_64
LOGNAME=tmondrag
BC_MEM_PER_NODE=121856
PATH=/app/unsupported/COST/git/2.4.4/gnu//bin:/app/unsupported/COST/tcltk/8.6.4/gnu//bin:/usr/local/krb5/bin:/p/home/apps/hpe/mpt-2.19/bin:/p/home/apps/gnu_compiler/7.2.0/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/opt/c3/bin:/opt/pbs/default/bin:/sbin:/bin:/pbs/SLB:/app/unsupported/local/bin:/app/mpiutil
PETTT_HOME=/app/unsupported/PETtools/CE
PBS_ENVIRONMENT=PBS_BATCH
CMAKE_INCLUDE_PATH=/app/unsupported/COST/tcltk/8.6.4/gnu//include
SDL_AUDIODRIVER=pulse
LDFLAGS=-L/app/unsupported/COST/git/2.4.4/gnu//lib -L/app/unsupported/COST/tcltk/8.6.4/gnu//lib
MPICC_CC=gcc
COST_HOME=/app/unsupported/COST
MODULE_VERSION_STACK=3.2.10
I_MPI_FC=gfortran
MPI_ROOT=/p/home/apps/hpe/mpt-2.19
USE_PCM_DB=2
LESSKEY=/etc/lesskey.bin
TZ=US/Central
JDK_HOME=/usr/lib64/jvm/java
WORKDIR=/p/work2/tmondrag
WINDOWMANAGER=
AUDIODRIVER=pulseaudio
PYTHONSTARTUP=/etc/pythonstart
OLDPWD=/p/home/tmondrag/WORK/moose
LOADEDMODULES=compiler/gcc/7.2.0:mpi/sgimpt/2.19:costinit:tcltk/gnu/8.6.4:git/gnu/2.4.4
PBS_O_QUEUE=itl
PWD=/p/home/tmondrag/WORK/moose/petsc
PBS_JOBNAME=PETSc_rebuild
================================================================================
TEST resetEnvCompilers from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1725)
TESTING: resetEnvCompilers from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1725)
===============================================================================
***** WARNING: CC (set to gcc) found in environment variables - ignoring
use ./configure CC=$CC if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: CXX (set to g++) found in environment variables - ignoring
use ./configure CXX=$CXX if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: F77 (set to gfortran) found in environment variables - ignoring
use ./configure F77=$F77 if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: F90 (set to gfortran) found in environment variables - ignoring
use ./configure F90=$F90 if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: CPPFLAGS (set to -I/app/unsupported/COST/tcltk/8.6.4/gnu//include) found in environment variables - ignoring
use ./configure CPPFLAGS=$CPPFLAGS if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: LDFLAGS (set to -L/app/unsupported/COST/git/2.4.4/gnu//lib -L/app/unsupported/COST/tcltk/8.6.4/gnu//lib) found in environment variables - ignoring
use ./configure LDFLAGS=$LDFLAGS if you really want to use that value ******
===============================================================================
================================================================================
TEST checkEnvCompilers from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1755)
TESTING: checkEnvCompilers from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1755)
================================================================================
TEST checkMPICompilerOverride from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1688)
TESTING: checkMPICompilerOverride from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1688)
Check if --with-mpi-dir is used along with CC CXX or FC compiler options.
This usually prevents mpi compilers from being used - so issue a warning
================================================================================
TEST requireMpiLdPath from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1709)
TESTING: requireMpiLdPath from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1709)
OpenMPI wrappers require LD_LIBRARY_PATH set
================================================================================
TEST checkInitialFlags from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:458)
TESTING: checkInitialFlags from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:458)
Initialize the compiler and linker flags
Initialized CFLAGS to
Initialized CFLAGS to
Initialized LDFLAGS to
Initialized CUDAFLAGS to
Initialized CUDAFLAGS to
Initialized LDFLAGS to
Initialized CXXFLAGS to
Initialized CXX_CXXFLAGS to
Initialized LDFLAGS to
Initialized FFLAGS to
Initialized FFLAGS to
Initialized LDFLAGS to
Initialized CPPFLAGS to
Initialized FPPFLAGS to
Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets
Initialized CXXPPFLAGS to
Initialized CC_LINKER_FLAGS to []
Initialized CXX_LINKER_FLAGS to []
Initialized FC_LINKER_FLAGS to []
Initialized CUDAC_LINKER_FLAGS to []
Initialized sharedLibraryFlags to []
Initialized dynamicLibraryFlags to []
================================================================================
TEST checkCCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:628)
TESTING: checkCCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:628)
Locate a functional C compiler
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicc...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicc...not found
Checking for program /usr/local/krb5/bin/mpicc...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicc...found
Defined make macro "CC" to "mpicc"
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Running Executable WITHOUT threads to time it out
Executing: mpicc --version
stdout:
gcc (GCC) 7.2.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers
================================================================================
TEST checkCPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:667)
TESTING: checkCPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:667)
Locate a functional C preprocessor
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicc...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicc...not found
Checking for program /usr/local/krb5/bin/mpicc...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicc...found
Defined make macro "CPP" to "mpicc -E"
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
================================================================================
TEST checkCUDACompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:703)
TESTING: checkCUDACompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:703)
Locate a functional CUDA compiler
================================================================================
TEST checkCUDAPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:743)
TESTING: checkCUDAPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:743)
Locate a functional CUDA preprocessor
================================================================================
TEST checkCxxCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:842)
TESTING: checkCxxCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:842)
Locate a functional Cxx compiler
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicxx...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicxx...not found
Checking for program /usr/local/krb5/bin/mpicxx...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicxx...found
Defined make macro "CXX" to "mpicxx"
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Running Executable WITHOUT threads to time it out
Executing: mpicxx --version
stdout:
g++ (GCC) 7.2.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
================================================================================
TEST checkCxxPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:883)
TESTING: checkCxxPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:883)
Locate a functional Cxx preprocessor
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicxx...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicxx...not found
Checking for program /usr/local/krb5/bin/mpicxx...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicxx...found
Defined make macro "CXXPP" to "mpicxx -E"
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <cstdlib>
Running Executable WITHOUT threads to time it out
Executing: mpicxx -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Preprocess stderr before filtering::
Preprocess stderr after filtering::
================================================================================
TEST checkFortranCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:984)
TESTING: checkFortranCompiler from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:984)
Locate a functional Fortran compiler
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpif90...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpif90...not found
Checking for program /usr/local/krb5/bin/mpif90...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpif90...found
Defined make macro "FC" to "mpif90"
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Running Executable WITHOUT threads to time it out
Executing: mpif90 --version
stdout:
GNU Fortran (GCC) 7.2.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
================================================================================
TEST checkFortranPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1021)
TESTING: checkFortranPreprocessor from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1021)
Locate a functional Fortran preprocessor
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpif90...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpif90...not found
Checking for program /usr/local/krb5/bin/mpif90...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpif90...found
Defined make macro "FPP" to "mpif90 -E"
Deleting "FPP"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpif90...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpif90...not found
Checking for program /usr/local/krb5/bin/mpif90...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpif90...found
Defined make macro "FPP" to "mpif90 --use cpp32"
Deleting "FPP"
================================================================================
TEST checkFortranComments from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1043)
TESTING: checkFortranComments from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1043)
Make sure fortran comment "!" works
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
! comment
end
Fortran comments can use ! in column 1
================================================================================
TEST checkLargeFileIO from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1174)
TESTING: checkLargeFileIO from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1174)
================================================================================
TEST checkArchiver from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1273)
TESTING: checkArchiver from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1273)
Check that the archiver exists and can make a library usable by the compiler
Running Executable WITHOUT threads to time it out
Executing: ar -V
stdout:
GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.32.0.20190909-9.36
Copyright (C) 2019 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Running Executable WITHOUT threads to time it out
Executing: ar -V
stdout:
GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.32.0.20190909-9.36
Copyright (C) 2019 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Defined make macro "FAST_AR_FLAGS" to "Scq"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
return a+1;
}
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/ar...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/ar...not found
Checking for program /usr/local/krb5/bin/ar...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/ar...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/ar...not found
Checking for program /opt/clmgr/sbin/ar...not found
Checking for program /opt/clmgr/bin/ar...not found
Checking for program /opt/sgi/sbin/ar...not found
Checking for program /opt/sgi/bin/ar...not found
Checking for program /usr/local/bin/ar...not found
Checking for program /usr/bin/ar...found
Defined make macro "AR" to "/usr/bin/ar"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/ranlib...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/ranlib...not found
Checking for program /usr/local/krb5/bin/ranlib...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/ranlib...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/ranlib...not found
Checking for program /opt/clmgr/sbin/ranlib...not found
Checking for program /opt/clmgr/bin/ranlib...not found
Checking for program /opt/sgi/sbin/ranlib...not found
Checking for program /opt/sgi/bin/ranlib...not found
Checking for program /usr/local/bin/ranlib...not found
Checking for program /usr/bin/ranlib...found
Defined make macro "RANLIB" to "/usr/bin/ranlib -c"
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/ar cr /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconf1.a /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conf1.o
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/ranlib -c /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconf1.a
Possible ERROR while running ranlib:
stderr:
/usr/bin/ranlib: invalid option -- 'c'
Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary.
Running Executable WITHOUT threads to time it out
Executing: ar -V
stdout:
GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.32.0.20190909-9.36
Copyright (C) 2019 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Running Executable WITHOUT threads to time it out
Executing: ar -V
stdout:
GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.32.0.20190909-9.36
Copyright (C) 2019 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Defined make macro "FAST_AR_FLAGS" to "Scq"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
return a+1;
}
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/ar...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/ar...not found
Checking for program /usr/local/krb5/bin/ar...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/ar...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/ar...not found
Checking for program /opt/clmgr/sbin/ar...not found
Checking for program /opt/clmgr/bin/ar...not found
Checking for program /opt/sgi/sbin/ar...not found
Checking for program /opt/sgi/bin/ar...not found
Checking for program /usr/local/bin/ar...not found
Checking for program /usr/bin/ar...found
Defined make macro "AR" to "/usr/bin/ar"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/ranlib...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/ranlib...not found
Checking for program /usr/local/krb5/bin/ranlib...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/ranlib...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/ranlib...not found
Checking for program /opt/clmgr/sbin/ranlib...not found
Checking for program /opt/clmgr/bin/ranlib...not found
Checking for program /opt/sgi/sbin/ranlib...not found
Checking for program /opt/sgi/bin/ranlib...not found
Checking for program /usr/local/bin/ranlib...not found
Checking for program /usr/bin/ranlib...found
Defined make macro "RANLIB" to "/usr/bin/ranlib"
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/ar cr /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconf1.a /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conf1.o
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/ranlib /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconf1.a
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern int foo(int);
int main() {
int b = foo(1); if (b);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -L/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -lconf1
Defined make macro "AR_FLAGS" to "cr"
Defined make macro "AR_LIB_SUFFIX" to "a"
================================================================================
TEST checkSharedLinker from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1387)
TESTING: checkSharedLinker from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1387)
Check that the linker can produce shared libraries
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Checking shared linker mpicc using flags ['-shared']
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicc...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicc...not found
Checking for program /usr/local/krb5/bin/mpicc...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicc...found
Defined make macro "LD_SHARED" to "mpicc"
Trying C compiler flag
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -shared /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Valid C linker flag -shared
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
void foo(void){
fprintf_ptr(stdout,"hello");
return;
}
void bar(void){foo();}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against symbol `fprintf_ptr' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: nonrepresentable section on output
collect2: error: ld returned 1 exit status
Rejected C compiler flag because it was not compatible with shared linker mpicc using flags ['-shared']
Running Executable WITHOUT threads to time it out
Executing: mpicc --help | head -n 20
stdout:
Usage: gcc [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase.
--help Display this information.
--target-help Display target specific command line options.
--help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
Display specific types of command line options.
(Use '-v --help' to display command line options of sub-processes).
--version Display compiler version information.
-dumpspecs Display all of the built in spec strings.
-dumpversion Display the version of the compiler.
-dumpmachine Display the compiler's target processor.
-print-search-dirs Display the directories in the compiler's search path.
-print-libgcc-file-name Display the name of the compiler's companion library.
-print-file-name=<lib> Display the full path to library <lib>.
-print-prog-name=<prog> Display the full path to compiler component <prog>.
-print-multiarch Display the target's normalized GNU triplet, used as
a component in the library path.
-print-multi-directory Display the root directory for versions of libgcc.
-print-multi-lib Display the mapping between command line options and
Trying C compiler flag -fPIC
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -fPIC
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Valid C linker flag -shared
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
void foo(void){
fprintf_ptr(stdout,"hello");
return;
}
void bar(void){foo();}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(void);
int main() {
int ret = foo();
if (ret) {}
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -L/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -lconftest
Using shared linker mpicc with flags ['-shared'] and library extension so
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
================================================================================
TEST checkPIC from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1121)
TESTING: checkPIC from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1121)
Determine the PIC option for each compiler
Trying Cxx for PIC code without any compiler flag
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
void foo(void){
fprintf_ptr(stdout,"hello");
return;
}
void bar(void){foo();}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against symbol `fprintf_ptr' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: nonrepresentable section on output
collect2: error: ld returned 1 exit status
Rejected Cxx compiler flag because shared linker cannot handle it
Running Executable WITHOUT threads to time it out
Executing: mpicxx --help | head -n 20
stdout:
Usage: g++ [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase.
--help Display this information.
--target-help Display target specific command line options.
--help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
Display specific types of command line options.
(Use '-v --help' to display command line options of sub-processes).
--version Display compiler version information.
-dumpspecs Display all of the built in spec strings.
-dumpversion Display the version of the compiler.
-dumpmachine Display the compiler's target processor.
-print-search-dirs Display the directories in the compiler's search path.
-print-libgcc-file-name Display the name of the compiler's companion library.
-print-file-name=<lib> Display the full path to library <lib>.
-print-prog-name=<prog> Display the full path to compiler component <prog>.
-print-multiarch Display the target's normalized GNU triplet, used as
a component in the library path.
-print-multi-directory Display the root directory for versions of libgcc.
-print-multi-lib Display the mapping between command line options and
Trying Cxx compiler flag -fPIC for PIC code
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -fPIC
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
void foo(void){
fprintf_ptr(stdout,"hello");
return;
}
void bar(void){foo();}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Accepted Cxx compiler flag -fPIC for PIC code
Trying FC for PIC code without any compiler flag
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
function foo(a)
real:: a,x,bar
common /xx/ x
x=a
foo = bar(x)
end
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against symbol `xx_' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: nonrepresentable section on output
collect2: error: ld returned 1 exit status
Rejected FC compiler flag because shared linker cannot handle it
Running Executable WITHOUT threads to time it out
Executing: mpif90 --help | head -n 20
stdout:
Usage: gfortran [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase.
--help Display this information.
--target-help Display target specific command line options.
--help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
Display specific types of command line options.
(Use '-v --help' to display command line options of sub-processes).
--version Display compiler version information.
-dumpspecs Display all of the built in spec strings.
-dumpversion Display the version of the compiler.
-dumpmachine Display the compiler's target processor.
-print-search-dirs Display the directories in the compiler's search path.
-print-libgcc-file-name Display the name of the compiler's companion library.
-print-file-name=<lib> Display the full path to library <lib>.
-print-prog-name=<prog> Display the full path to compiler component <prog>.
-print-multiarch Display the target's normalized GNU triplet, used as
a component in the library path.
-print-multi-directory Display the root directory for versions of libgcc.
-print-multi-lib Display the mapping between command line options and
Trying FC compiler flag -fPIC for PIC code
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -fPIC
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
function foo(a)
real:: a,x,bar
common /xx/ x
x=a
foo = bar(x)
end
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Accepted FC compiler flag -fPIC for PIC code
================================================================================
TEST checkSharedLinkerPaths from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1499)
TESTING: checkSharedLinkerPaths from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1499)
Determine the shared linker path options
- IRIX: -rpath
- Linux, OSF: -Wl,-rpath,
- Solaris: -R
- FreeBSD: -Wl,-R,
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: mpicc -V
Trying C linker flag -Wl,-rpath,
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -Wl,-rpath,/p/work2/tmondrag/moose/petsc -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Valid C linker flag -Wl,-rpath,/p/work2/tmondrag/moose/petsc
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: mpicc -V
Trying Cxx linker flag -Wl,-rpath,
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -Wl,-rpath,/p/work2/tmondrag/moose/petsc /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Valid Cxx linker flag -Wl,-rpath,/p/work2/tmondrag/moose/petsc
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: mpicc -V
Trying FC linker flag -Wl,-rpath,
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -Wl,-rpath,/p/work2/tmondrag/moose/petsc -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Valid FC linker flag -Wl,-rpath,/p/work2/tmondrag/moose/petsc
================================================================================
TEST checkLibC from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1534)
TESTING: checkLibC from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1534)
Test whether we need to explicitly include libc in shared linking
- Mac OSX requires an explicit reference to libc for shared linking
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
int foo(void) {void *chunk = malloc(31); free(chunk); return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o
Shared linking does not require an explicit libc reference
================================================================================
TEST checkDynamicLinker from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1580)
TESTING: checkDynamicLinker from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1580)
Check that the linker can dynamicaly load shared libraries
Checking for header: dlfcn.h
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.headers
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_DLFCN_H" to "1"
Checking for functions [dlopen dlsym dlclose] in library ['dl'] []
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.libraries
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen();
static void _check_dlopen() { dlopen(); }
char dlsym();
static void _check_dlsym() { dlsym(); }
char dlclose();
static void _check_dlclose() { dlclose(); }
int main() {
_check_dlopen();
_check_dlsym();
_check_dlclose();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -ldl
Defined "HAVE_LIBDL" to "1"
Adding ['dl'] to LIBS
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Checking dynamic linker mpicc using flags ['-shared']
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mpicc...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mpicc...not found
Checking for program /usr/local/krb5/bin/mpicc...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mpicc...found
Defined make macro "DYNAMICLINKER" to "mpicc"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -ldl
Valid C linker flag -shared
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int foo(void) {printf("test");return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so -shared -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
#include <stdio.h>
int main() {
void *handle = dlopen("/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/libconftest.so", 0);
int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo");
if (!foo) {
printf("Could not load symbol\n");
return -1;
}
if ((*foo)()) {
printf("Invalid return from foo()\n");
return -1;
}
if (dlclose(handle)) {
printf("Could not close library\n");
return -1;
}
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -ldl
Using dynamic linker mpicc with flags ['-shared'] and library extension so
================================================================================
TEST output from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1629)
TESTING: output from config.setCompilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1629)
Output module data as defines and substitutions
Substituting "CC" with "mpicc"
Substituting "CFLAGS" with " -fPIC"
Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath,"
Substituting "CPP" with "mpicc -E"
Substituting "CPPFLAGS" with ""
Substituting "CXX" with "mpicxx"
Substituting "CXX_CXXFLAGS" with " -fPIC"
Substituting "CXXFLAGS" with ""
Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath,"
Substituting "CXXPP" with "mpicxx -E"
Substituting "CXXPPFLAGS" with ""
Substituting "FC" with "mpif90"
Substituting "FFLAGS" with " -fPIC"
Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath,"
Substituting "LDFLAGS" with ""
Substituting "LIBS" with "-ldl "
Substituting "SHARED_LIBRARY_FLAG" with "-shared"
child config.setCompilers 7.550401
================================================================================
TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:36)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:36)
================================================================================
TEST configureSharedLibraries from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:52)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:52)
Checks whether shared libraries should be used, for which you must
- Specify --with-shared-libraries
- Have found a working shared linker
Defines PETSC_USE_SHARED_LIBRARIES if they are used
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Defined make rule "shared_arch" with dependencies "shared_linux" and code []
Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)"
Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))"
Defined make macro "BUILDSHAREDLIB" to "yes"
Defined "USE_SHARED_LIBRARIES" to "1"
================================================================================
TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:94)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:94)
Checks whether dynamic loading is available (with dlfcn.h and libdl)
Defined "HAVE_DYNAMIC_LIBRARIES" to "1"
================================================================================
TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:100)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/p/work2/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:100)
Defines PETSC_SERIALIZE_FUNCTIONS if they are used
Requires shared libraries
child PETSc.options.sharedLibraries 0.007385
================================================================================
TEST configureIndexSize from PETSc.options.indexTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/indexTypes.py:30)
TESTING: configureIndexSize from PETSc.options.indexTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/indexTypes.py:30)
Defined make macro "PETSC_INDEX_SIZE" to "32"
child PETSc.options.indexTypes 0.000857
================================================================================
TEST configureCompilerFlags from config.compilerFlags(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilerFlags.py:72)
TESTING: configureCompilerFlags from config.compilerFlags(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilerFlags.py:72)
Get the default compiler flags
Defined make macro "C_VERSION" to "gcc (GCC) 7.2.0"
Defined make macro "MPICC_SHOW" to "gcc -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi"
Trying C compiler flag -Wall
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wall
Trying C compiler flag -Wwrite-strings
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wwrite-strings
Trying C compiler flag -Wno-strict-aliasing
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wno-strict-aliasing
Trying C compiler flag -Wno-unknown-pragmas
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wno-unknown-pragmas
Trying C compiler flag -fstack-protector
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -fstack-protector
Trying C compiler flag -mfp16-format=ieee
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
gcc: error: unrecognized command line option ���-mfp16-format=ieee���
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link
Rejecting compiler flag -mfp16-format=ieee due to
gcc: error: unrecognized command line option ���-mfp16-format=ieee���
PETSc Error: No output file produced
Rejected C compiler flag -mfp16-format=ieee
Trying C compiler flag -fvisibility=hidden
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -fvisibility=hidden
Defined make macro "MPICC_SHOW" to "gcc -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi"
Trying C compiler flag -g
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -g
Trying C compiler flag -O
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -O
Defined make macro "Cxx_VERSION" to "g++ (GCC) 7.2.0"
Defined make macro "MPICXX_SHOW" to "g++ -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi++ -lmpi"
Trying Cxx compiler flag -Wall
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -Wall
Trying Cxx compiler flag -Wwrite-strings
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -Wwrite-strings
Trying Cxx compiler flag -Wno-strict-aliasing
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -Wno-strict-aliasing
Trying Cxx compiler flag -Wno-unknown-pragmas
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -Wno-unknown-pragmas
Trying Cxx compiler flag -fstack-protector
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -fstack-protector
Trying Cxx compiler flag -fvisibility=hidden
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -fvisibility=hidden
Defined make macro "MPICXX_SHOW" to "g++ -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi++ -lmpi"
Trying Cxx compiler flag -g
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -g
Trying Cxx compiler flag -O
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -O
Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 7.2.0"
Defined make macro "MPIFC_SHOW" to "gfortran -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi"
Trying FC compiler flag -Wall
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -Wall
Trying FC compiler flag -ffree-line-length-0
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -ffree-line-length-0
Trying FC compiler flag -Wno-unused-dummy-argument
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -Wno-unused-dummy-argument
Defined make macro "MPIFC_SHOW" to "gfortran -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi"
Trying FC compiler flag -g
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -g
Trying FC compiler flag -O
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
Added FC compiler flag -O
child config.compilerFlags 1.136165
================================================================================
TEST checkRestrict from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138)
TESTING: checkRestrict from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138)
Check for the C/CXX restrict keyword
Running Executable WITHOUT threads to time it out
Executing: mpicc -V
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.compilers
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c:5:20: warning: unused variable ���x��� [-Wunused-variable]
float * __restrict x;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * __restrict x;;
return 0;
}
compilers: Set C restrict keyword to __restrict
Defined "C_RESTRICT" to "__restrict"
================================================================================
TEST checkCFormatting from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:391)
TESTING: checkCFormatting from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:391)
Activate format string checking if using the GNU compilers
================================================================================
TEST checkCInline from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:108)
TESTING: checkCInline from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:108)
Check for C inline keyword
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
static inline int foo(int a) {return a;}
int main() {
foo(1);;
return 0;
}
compilers: Set C Inline keyword to inline
Defined "C_INLINE" to "inline"
================================================================================
TEST checkDynamicLoadFlag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:402)
TESTING: checkDynamicLoadFlag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:402)
Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;
int main() {
dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -ldl
Defined "HAVE_RTLD_LAZY" to "1"
Defined "HAVE_RTLD_NOW" to "1"
Defined "HAVE_RTLD_LOCAL" to "1"
Defined "HAVE_RTLD_GLOBAL" to "1"
================================================================================
TEST checkCLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:202)
TESTING: checkCLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:202)
Determines the libraries needed to link with C compiled code
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
void asub(void)
{char s[16];printf("testing %s",s);}
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
print*,'testing'
stop
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -ldl
C libraries are not needed when using Fortran linker
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
void asub(void)
{char s[16];printf("testing %s",s);}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main(int argc,char **args)
{return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -ldl
C libraries are not needed when using C++ linker
================================================================================
TEST checkDependencyGenerationFlag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1345)
TESTING: checkDependencyGenerationFlag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1345)
Check if -MMD works for dependency generation, and add it if it does
Trying C compiler flag -MMD -MP
Defined make macro "C_DEPFLAGS" to "-MMD -MP"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -MMD -MP /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Trying Cxx compiler flag -MMD -MP
Defined make macro "CXX_DEPFLAGS" to "-MMD -MP"
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -MMD -MP /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
================================================================================
TEST checkC99Flag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1390)
TESTING: checkC99Flag from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1390)
Check for -std=c99 or equivalent flag
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c:7:11: warning: variable ���x��� set but not used [-Wunused-but-set-variable]
float x[2],y;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>
int main() {
float x[2],y;
y = FLT_ROUNDS;
// c++ comment
int j = 2;
for (int i=0; i<2; i++){
x[i] = i*j*y;
}
;
return 0;
}
Accepted C99 compile flag:
Defined "HAVE_C99" to "1"
================================================================================
TEST checkRestrict from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138)
TESTING: checkRestrict from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138)
Check for the C/CXX restrict keyword
Running Executable WITHOUT threads to time it out
Executing: mpicc -V
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc: In function ���int main()���:
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:5:20: warning: unused variable ���x��� [-Wunused-variable]
float * __restrict x;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * __restrict x;;
return 0;
}
compilers: Set Cxx restrict keyword to __restrict
Defined "CXX_RESTRICT" to "__restrict"
================================================================================
TEST checkCxxOptionalExtensions from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:421)
TESTING: checkCxxOptionalExtensions from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:421)
Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
class somename { int i; };;
return 0;
}
================================================================================
TEST checkCxxInline from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:123)
TESTING: checkCxxInline from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:123)
Check for C++ inline keyword
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
static inline int foo(int a) {return a;}
int main() {
foo(1);;
return 0;
}
compilers: Set Cxx Inline keyword to inline
Defined "CXX_INLINE" to "inline"
================================================================================
TEST checkCxxLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:533)
TESTING: checkCxxLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:533)
Determines the libraries needed to link with C++ from C and Fortran
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main(int argc,char **args)
{return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o: in function `asub()':
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `std::cout'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o: in function `__static_initialization_and_destruction_0':
/p/home/apps/gnu_compiler/7.2.0/include/c++/7.2.0/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/bin/ld: /p/home/apps/gnu_compiler/7.2.0/include/c++/7.2.0/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0'
collect2: error: ld returned 1 exit status
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main(int argc,char **args)
{return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
compilers: C++ requires -lstdc++ to link with C compiler
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }}
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
print*,'testing'
stop
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
C++ libraries are not needed when using FC linker
================================================================================
TEST checkCxxDialect from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:449)
TESTING: checkCxxDialect from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:449)
Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any].
-with-cxx-dialect can take options:
auto: use highest dialect configure can determine
cxx17: [future?]
cxx14: gnu++14 or c++14
cxx11: gnu++11 or c++11
0: disable CxxDialect check and use compiler default
checkCxxDialect: checking CXX11 with flag:
Defined "HAVE_CXX_DIALECT_CXX11" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <random>
#include <iostream>
#include <complex>
template<typename T> constexpr T Cubed( T x ) { return x*x*x; }
int main() {
std::random_device rd;
std::mt19937 mt(rd());
std::normal_distribution<double> dist(0,1);
const double x = dist(mt);
std::cout << x;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -V
================================================================================
TEST checkFortranNameMangling from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:838)
TESTING: checkFortranNameMangling from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:838)
Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL
Testing Fortran mangling type underscore with code void d1chk_(void){return;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1chk_(void){return;}
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
call d1chk()
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
compilers: Fortran name mangling is underscore
Defined "HAVE_FORTRAN_UNDERSCORE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpif90 --version
stdout:
GNU Fortran (GCC) 7.2.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Defined "FORTRAN_CHARLEN_T" to "int"
================================================================================
TEST checkFortranNameManglingDouble from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:879)
TESTING: checkFortranNameManglingDouble from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:879)
Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1_chk__(void){return;}
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
call d1_chk()
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o: in function `MAIN__':
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90:2: undefined reference to `d1_chk_'
collect2: error: ld returned 1 exit status
================================================================================
TEST checkFortranLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:889)
TESTING: checkFortranLibraries from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:889)
Substitutes for FLIBS the libraries needed to link with Fortran
This macro is intended to be used in those situations when it is
necessary to mix, e.g. C++ and Fortran 77, source code into a single
program or shared library.
For example, if object files from a C++ and Fortran 77 compiler must
be linked together, then the C++ compiler/linker must be used for
linking (since special C++-ish things need to happen at link time
like calling global constructors, instantiating templates, enabling
exception support, etc.).
However, the Fortran 77 intrinsic and run-time libraries must be
linked in as well, but the C++ compiler/linker does not know how to
add these Fortran 77 libraries.
This code was translated from the autoconf macro which was packaged in
its current form by Matthew D. Langston <langston at SLAC.Stanford.EDU>.
However, nearly all of this macro came from the OCTAVE_FLIBS macro in
octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton
for writing this extremely useful macro.
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Possible ERROR while running compiler:
stderr:
/p/home/apps/hpe/mpt-2.19/include/mpif.h:561:54:
integer MPI_STATUSES_IGNORE(MPI_STATUS_SIZE,1)
1
Warning: Unused variable ���mpi_statuses_ignore��� declared at (1) [-Wunused-variable]
Source:
program main
#include <mpif.h>
call MPI_Allreduce()
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
subroutine asub()
print*,'testing'
call MPI_Allreduce()
return
end
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main(int argc,char **args)
{return 0;}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o: in function `asub_':
/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done'
collect2: error: ld returned 1 exit status
Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -lstdc++ -ldl
Possible ERROR while running linker:
stderr:
Driving: gfortran -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -lstdc++ -ldl -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include -I/p/home/apps/hpe/mpt-2.19/include -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -L/p/home/apps/hpe/mpt-2.19/lib -lmpi -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /p/home/u4immtww/gcc-7.2.0/configure --prefix=/p/home/apps/gnu_compiler/7.2.0 --enable-languages=c,c++,fortran,go
Thread model: posix
gcc version 7.2.0 (GCC)
Reading specs from /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-o' '/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-I' '/p/home/apps/gnu_compiler/7.2.0/include' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-L/p/home/apps/hpe/mpt-2.19/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/
LIBRARY_PATH=/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/p/home/apps/hpe/mpt-2.19/lib/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-I' '/p/home/apps/gnu_compiler/7.2.0/include' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-L/p/home/apps/hpe/mpt-2.19/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/collect2 -plugin /p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/liblto_plugin.so -plugin-opt=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper -plugin-opt=-fresolution=/p/work2/tmondrag/cceWXJkS.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtbegin.o -L/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../.. /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -lstdc++ -ldl -lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1 -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtend.o /usr/lib/../lib64/crtn.o
COLLECT_GCC_OPTIONS='-o' '/p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-I' '/p/home/apps/gnu_compiler/7.2.0/include' '-I' '/p/home/apps/hpe/mpt-2.19/include' '-L/p/home/apps/hpe/mpt-2.19/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
compilers: Checking arg Driving:
compilers: Unknown arg Driving:
compilers: Checking arg gfortran
compilers: Unknown arg gfortran
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest
compilers: Unknown arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest
compilers: Checking arg -v
compilers: Unknown arg -v
compilers: Checking arg -fPIC
compilers: Unknown arg -fPIC
compilers: Checking arg -Wall
compilers: Unknown arg -Wall
compilers: Checking arg -ffree-line-length-0
compilers: Unknown arg -ffree-line-length-0
compilers: Checking arg -Wno-unused-dummy-argument
compilers: Unknown arg -Wno-unused-dummy-argument
compilers: Checking arg -g
compilers: Unknown arg -g
compilers: Checking arg -O
compilers: Unknown arg -O
compilers: Checking arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o
compilers: Unknown arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o
compilers: Checking arg -lstdc++
compilers: Found library: -lstdc++
compilers: Checking arg -ldl
compilers: Found library: -ldl
compilers: Checking arg -I/p/home/apps/hpe/mpt-2.19/include
compilers: Found include directory: /p/home/apps/hpe/mpt-2.19/include
compilers: Checking arg -I/p/home/apps/gnu_compiler/7.2.0/include
compilers: Found include directory: /p/home/apps/gnu_compiler/7.2.0/include
compilers: Checking arg -I/p/home/apps/hpe/mpt-2.19/include
compilers: Found include directory: /p/home/apps/hpe/mpt-2.19/include
compilers: Checking arg -lpthread
compilers: Found library: -lpthread
compilers: Checking arg /usr/lib64/libcpuset.so.1
compilers: Unknown arg /usr/lib64/libcpuset.so.1
compilers: Checking arg /usr/lib64/libbitmask.so.1
compilers: Unknown arg /usr/lib64/libbitmask.so.1
compilers: Checking arg -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Found library directory: -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Checking arg -lmpi
compilers: Found library: -lmpi
compilers: Checking arg -l
compilers: Found canonical library: -lgfortran
compilers: Checking arg -l
compilers: Found canonical library: -lm
compilers: Checking arg -shared-libgcc
compilers: Unknown arg -shared-libgcc
compilers: Checking arg Using
compilers: Unknown arg Using
compilers: Checking arg built-in
compilers: Unknown arg built-in
compilers: Checking arg specs.
compilers: Unknown arg specs.
compilers: Checking arg COLLECT_GCC=gfortran
compilers: Unknown arg COLLECT_GCC=gfortran
compilers: Checking arg COLLECT_LTO_WRAPPER=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper
compilers: Unknown arg COLLECT_LTO_WRAPPER=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper
compilers: Checking arg Target:
compilers: Unknown arg Target:
compilers: Checking arg x86_64-pc-linux-gnu
compilers: Unknown arg x86_64-pc-linux-gnu
compilers: Checking arg Configured
compilers: Unknown arg Configured
compilers: Checking arg with:
compilers: Unknown arg with:
compilers: Checking arg /p/home/u4immtww/gcc-7.2.0/configure
compilers: Unknown arg /p/home/u4immtww/gcc-7.2.0/configure
compilers: Checking arg --prefix=/p/home/apps/gnu_compiler/7.2.0
compilers: Unknown arg --prefix=/p/home/apps/gnu_compiler/7.2.0
compilers: Checking arg --enable-languages=c,c++,fortran,go
compilers: Unknown arg --enable-languages=c,c++,fortran,go
compilers: Checking arg Thread
compilers: Unknown arg Thread
compilers: Checking arg model:
compilers: Unknown arg model:
compilers: Checking arg posix
compilers: Unknown arg posix
compilers: Checking arg gcc
compilers: Unknown arg gcc
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 7.2.0
compilers: Unknown arg 7.2.0
compilers: Checking arg (GCC)
compilers: Unknown arg (GCC)
compilers: Checking arg Reading
compilers: Unknown arg Reading
compilers: Checking arg specs
compilers: Unknown arg specs
compilers: Checking arg from
compilers: Unknown arg from
compilers: Checking arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/libgfortran.spec
compilers: Unknown arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/libgfortran.spec
compilers: Checking arg rename
compilers: Unknown arg rename
compilers: Checking arg spec
compilers: Unknown arg spec
compilers: Checking arg lib
compilers: Unknown arg lib
compilers: Checking arg to
compilers: Unknown arg to
compilers: Checking arg liborig
compilers: Unknown arg liborig
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Checking arg COMPILER_PATH=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/
compilers: Skipping arg COMPILER_PATH=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/
compilers: Checking arg LIBRARY_PATH=/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/p/home/apps/hpe/mpt-2.19/lib/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../:/lib/:/usr/lib/
compilers: Skipping arg LIBRARY_PATH=/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/p/home/apps/hpe/mpt-2.19/lib/:/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../:/lib/:/usr/lib/
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Checking arg /p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/collect2
compilers: Unknown arg /p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/collect2
compilers: Checking arg -plugin
compilers: Unknown arg -plugin
compilers: Checking arg /p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/liblto_plugin.so
compilers: Unknown arg /p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/liblto_plugin.so
compilers: Checking arg -plugin-opt=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper
compilers: Unknown arg -plugin-opt=/p/home/apps/gnu_compiler/7.2.0/libexec/gcc/x86_64-pc-linux-gnu/7.2.0/lto-wrapper
compilers: Checking arg -plugin-opt=-fresolution=/p/work2/tmondrag/cceWXJkS.res
compilers: Unknown arg -plugin-opt=-fresolution=/p/work2/tmondrag/cceWXJkS.res
compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
compilers: Checking arg -plugin-opt=-pass-through=-lgcc
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
compilers: Checking arg -plugin-opt=-pass-through=-lquadmath
compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath
compilers: Checking arg -plugin-opt=-pass-through=-lm
compilers: Unknown arg -plugin-opt=-pass-through=-lm
compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
compilers: Checking arg -plugin-opt=-pass-through=-lgcc
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
compilers: Checking arg -plugin-opt=-pass-through=-lc
compilers: Unknown arg -plugin-opt=-pass-through=-lc
compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
compilers: Checking arg -plugin-opt=-pass-through=-lgcc
compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
compilers: Checking arg --eh-frame-hdr
compilers: Unknown arg --eh-frame-hdr
compilers: Checking arg -m
compilers: Unknown arg -m
compilers: Checking arg elf_x86_64
compilers: Unknown arg elf_x86_64
compilers: Checking arg -dynamic-linker
compilers: Unknown arg -dynamic-linker
compilers: Checking arg /lib64/ld-linux-x86-64.so.2
compilers: Unknown arg /lib64/ld-linux-x86-64.so.2
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest
compilers: Unknown arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest
compilers: Checking arg /usr/lib/../lib64/crt1.o
compilers: Unknown arg /usr/lib/../lib64/crt1.o
compilers: Checking arg /usr/lib/../lib64/crti.o
compilers: Unknown arg /usr/lib/../lib64/crti.o
compilers: Checking arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtbegin.o
compilers: Unknown arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtbegin.o
compilers: Checking arg -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Already in lflags so skipping: -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Checking arg -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0
compilers: Found library directory: -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0
compilers: Checking arg -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64
compilers: Found library directory: -L/p/home/apps/gnu_compiler/7.2.0/lib64
compilers: Checking arg -L/lib/../lib64
compilers: Checking arg -L/usr/lib/../lib64
compilers: Checking arg -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Already in lflags so skipping: -L/p/home/apps/hpe/mpt-2.19/lib
compilers: Checking arg -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../..
compilers: Found library directory: -L/p/home/apps/gnu_compiler/7.2.0/lib
compilers: Checking arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o
compilers: Unknown arg /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o
compilers: Checking arg -lstdc++
compilers: Already in lflags: -lstdc++
compilers: Checking arg -ldl
compilers: Already in lflags: -ldl
compilers: Checking arg -lpthread
compilers: Already in lflags: -lpthread
compilers: Checking arg /usr/lib64/libcpuset.so.1
compilers: Unknown arg /usr/lib64/libcpuset.so.1
compilers: Checking arg /usr/lib64/libbitmask.so.1
compilers: Unknown arg /usr/lib64/libbitmask.so.1
compilers: Checking arg -lmpi
compilers: Already in lflags: -lmpi
compilers: Checking arg -lgfortran
compilers: Found library: -lgfortran
compilers: Checking arg -lm
compilers: Found library: -lm
compilers: Checking arg -lgcc_s
compilers: Found library: -lgcc_s
compilers: Checking arg -lgcc
compilers: Found system library therefore skipping: -lgcc
compilers: Checking arg -lquadmath
compilers: Found library: -lquadmath
compilers: Checking arg -lm
compilers: Already in lflags: -lm
compilers: Checking arg -lgcc_s
compilers: Already in lflags: -lgcc_s
compilers: Checking arg -lgcc
compilers: Found system library therefore skipping: -lgcc
compilers: Checking arg -lc
compilers: Found system library therefore skipping: -lc
compilers: Checking arg -lgcc_s
compilers: Already in lflags: -lgcc_s
compilers: Checking arg -lgcc
compilers: Found system library therefore skipping: -lgcc
compilers: Checking arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtend.o
compilers: Unknown arg /p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/crtend.o
compilers: Checking arg /usr/lib/../lib64/crtn.o
compilers: Unknown arg /usr/lib/../lib64/crtn.o
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-lpthread', '-Wl,-rpath,/p/home/apps/hpe/mpt-2.19/lib', '-L/p/home/apps/hpe/mpt-2.19/lib', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0', '-L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0', '-Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib64', '-L/p/home/apps/gnu_compiler/7.2.0/lib64', '-Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib', '-L/p/home/apps/gnu_compiler/7.2.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath']
compilers: Libraries needed to link Fortran main with the C linker: []
compilers: Check that Fortran libraries can be used with C as the linker
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lstdc++ -ldl -lpthread -Wl,-rpath,/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/hpe/mpt-2.19/lib -lmpi -lgfortran -lm -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib64 -L/p/home/apps/gnu_compiler/7.2.0/lib64 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib -L/p/home/apps/gnu_compiler/7.2.0/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lstdc++ -ldl -lpthread -Wl,-rpath,/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/hpe/mpt-2.19/lib -lmpi -lgfortran -lm -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib64 -L/p/home/apps/gnu_compiler/7.2.0/lib64 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib -L/p/home/apps/gnu_compiler/7.2.0/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
compilers: Check that Fortran libraries can be used with C++ as linker
compilers: Fortran libraries can be used from C++
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lstdc++ -ldl -lpthread -Wl,-rpath,/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/hpe/mpt-2.19/lib -lmpi -lgfortran -lm -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib64 -L/p/home/apps/gnu_compiler/7.2.0/lib64 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib -L/p/home/apps/gnu_compiler/7.2.0/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -lstdc++ -ldl -lpthread -Wl,-rpath,/p/home/apps/hpe/mpt-2.19/lib -L/p/home/apps/hpe/mpt-2.19/lib -lmpi -lgfortran -lm -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/p/home/apps/gnu_compiler/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib64 -L/p/home/apps/gnu_compiler/7.2.0/lib64 -Wl,-rpath,/p/home/apps/gnu_compiler/7.2.0/lib -L/p/home/apps/gnu_compiler/7.2.0/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
================================================================================
TEST checkFortranLinkingCxx from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1310)
TESTING: checkFortranLinkingCxx from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1310)
Check that Fortran can link C++ libraries
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void foo(void){d1chk_();}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void d1chk_(void){return;}
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.F90
Successful compile:
Source:
program main
call d1chk()
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilers/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/cxxobj.o /p/work2/tmondrag/petsc-N5i8ny/config.compilers/confc.o -lstdc++ -ldl
compilers: Fortran can link C++ functions
================================================================================
TEST setupFrameworkCompilers from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1455)
TESTING: setupFrameworkCompilers from config.compilers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1455)
child config.compilers 5.133946
================================================================================
TEST configureClosure from config.utilities.closure(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/closure.py:17)
TESTING: configureClosure from config.utilities.closure(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/closure.py:17)
Determine if Apple ^close syntax is supported in C
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure/conftest.c:6:6: error: expected identifier or ���(��� before ���^��� token
int (^closure)(int);;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int main() {
int (^closure)(int);;
return 0;
}
Compile failed inside link
child config.utilities.closure 0.035873
================================================================================
TEST checkFortranTypeSizes from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:56)
TESTING: checkFortranTypeSizes from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:56)
Check whether real*8 is supported and suggest flags which will allow support
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90:2:21:
real*8 variable
1
Warning: Unused variable ���variable��� declared at (1) [-Wunused-variable]
Source:
program main
real*8 variable
end
================================================================================
TEST checkFortranPreprocessor from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:73)
TESTING: checkFortranPreprocessor from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:73)
Determine if Fortran handles preprocessing properly
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
#define dummy
dummy
#ifndef dummy
fooey
#endif
end
compilers: Fortran uses preprocessor
================================================================================
TEST checkFortranDefineCompilerOption from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:96)
TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:96)
Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -DTesting /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
#define dummy
dummy
#ifndef Testing
fooey
#endif
end
Defined make macro "FC_DEFINE_FLAG" to "-D"
compilers: Fortran uses -D for defining macro
================================================================================
TEST checkFortran90 from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:146)
TESTING: checkFortran90 from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:146)
Determine whether the Fortran compiler handles F90
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
program main
INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8)
INTEGER (KIND=int) :: ierr
ierr = 1
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -lstdc++ -ldl
Defined "USING_F90" to "1"
Fortran compiler supports F90
================================================================================
TEST checkFortran90FreeForm from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:159)
TESTING: checkFortran90FreeForm from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:159)
Determine whether the Fortran compiler handles F90FreeForm
We also require that the compiler handles lines longer than 132 characters
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
program main
INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -lstdc++ -ldl
Defined "USING_F90FREEFORM" to "1"
Fortran compiler supports F90FreeForm
================================================================================
TEST checkFortran2003 from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:173)
TESTING: checkFortran2003 from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:173)
Determine whether the Fortran compiler handles F2003
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
module Base_module
type, public :: base_type
integer :: A
contains
procedure, public :: Print => BasePrint
end type base_type
contains
subroutine BasePrint(this)
class(base_type) :: this
end subroutine BasePrint
end module Base_module
program main
use,intrinsic :: iso_c_binding
Type(C_Ptr),Dimension(:),Pointer :: CArray
character(kind=c_char),pointer :: nullc => null()
character(kind=c_char,len=5),dimension(:),pointer::list1
allocate(list1(5))
CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/)
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -lstdc++ -ldl
Defined "USING_F2003" to "1"
Fortran compiler supports F2003
================================================================================
TEST checkFortran90Array from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:208)
TESTING: checkFortran90Array from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:208)
Check for F90 array interfaces
Running Executable WITHOUT threads to time it out
Executing: mpif90 -V
compilers: Using --with-batch, so guess that F90 uses a single argument for array pointers
================================================================================
TEST checkFortranModuleInclude from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:295)
TESTING: checkFortranModuleInclude from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:295)
Figures out what flag is used to specify the include path for Fortran modules
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
program main
use configtest
write(*,*) testint
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/configtest.o -lstdc++ -ldl
compilers: Fortran module include flag -I found
================================================================================
TEST checkFortranModuleOutput from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:361)
TESTING: checkFortranModuleOutput from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:361)
Figures out what flag is used to specify the include path for Fortran modules
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -module /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Possible ERROR while running compiler: exit code 1
stderr:
gfortran: error: unrecognized command line option ���-module���; did you mean ���-mhle���?
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -module compile failed
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -module:/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Possible ERROR while running compiler: exit code 1
stderr:
gfortran: error: unrecognized command line option ���-module:/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir���
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -module: compile failed
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fmod=/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Possible ERROR while running compiler: exit code 1
stderr:
gfortran: error: unrecognized command line option ���-fmod=/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir���
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -fmod= compile failed
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -J/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -J found
================================================================================
TEST checkFortranTypeStar from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:135)
TESTING: checkFortranTypeStar from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:135)
Determine whether the Fortran compiler handles type(*)
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
program main
interface
subroutine a(b)
type(*) :: b(:)
end subroutine
end interface
end
Defined "HAVE_FORTRAN_TYPE_STAR" to "1"
Fortran compiler supports type(*)
================================================================================
TEST checkFortranTypeInitialize from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:125)
TESTING: checkFortranTypeInitialize from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:125)
Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks)
Defined "FORTRAN_TYPE_INITIALIZE" to " = -2"
Initializing Fortran objects
================================================================================
TEST configureFortranFlush from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:116)
TESTING: configureFortranFlush from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:116)
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.F90
Successful compile:
Source:
program main
call flush(6)
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran/conftest.o -lstdc++ -ldl
Defined "HAVE_FORTRAN_FLUSH" to "1"
================================================================================
TEST checkDependencyGenerationFlag from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:406)
TESTING: checkDependencyGenerationFlag from config.compilersFortran(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:406)
Check if -MMD works for dependency generation, and add it if it does
Trying FC compiler flag -MMD -MP
Defined make macro "FC_DEPFLAGS" to "-MMD -MP"
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -MMD -MP /p/work2/tmondrag/petsc-N5i8ny/config.setCompilers/conftest.F90
Successful compile:
Source:
program main
end
child config.compilersFortran 2.903161
================================================================================
TEST checkStdC from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:105)
TESTING: checkStdC from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:105)
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <stdarg.h>
#include <string.h>
#include <float.h>
int main() {
;
return 0;
}
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <string.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
================================================================================
TEST checkStat from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:138)
TESTING: checkStat from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:138)
Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <sys/stat.h>
#if defined(S_ISBLK) && defined(S_IFDIR)
# if S_ISBLK (S_IFDIR)
You lose.
# endif
#endif
#if defined(S_ISBLK) && defined(S_IFCHR)
# if S_ISBLK (S_IFCHR)
You lose.
# endif
#endif
#if defined(S_ISLNK) && defined(S_IFREG)
# if S_ISLNK (S_IFREG)
You lose.
# endif
#endif
#if defined(S_ISSOCK) && defined(S_IFREG)
# if S_ISSOCK (S_IFREG)
You lose.
# endif
#endif
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
================================================================================
TEST checkSysWait from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:173)
TESTING: checkSysWait from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:173)
Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <sys/wait.h>
#ifndef WEXITSTATUS
#define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8)
#endif
#ifndef WIFEXITED
#define WIFEXITED(stat_val) (((stat_val) & 255) == 0)
#endif
int main() {
int s;
wait (&s);
s = WIFEXITED (s) ? WEXITSTATUS (s) : 1;
;
return 0;
}
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST checkTime from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:195)
TESTING: checkTime from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:195)
Checks if you can safely include both <sys/time.h> and <time.h>, and if so defines TIME_WITH_SYS_TIME
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_TIME_H" to "1"
Checking for header: sys/time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/time.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_TIME_H" to "1"
================================================================================
TEST checkMath from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:201)
TESTING: checkMath from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:201)
Checks for the math headers and defines
Checking for header: math.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
int main() {
double pi = M_PI;
if (pi);
;
return 0;
}
Found math #defines, like M_PI
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: setjmp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <setjmp.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SETJMP_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
#include <dos.h>
^~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
#include <dos.h>
^~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include <dos.h> ^~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fcntl.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FCNTL_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
#include <io.h>
^~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
#include <io.h>
^~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include <io.h> ^~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <malloc.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_MALLOC_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pwd.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_PWD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <strings.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_STRINGS_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_UNISTD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/sysinfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/sysinfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_SYSINFO_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
#include <machine/endian.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
#include <machine/endian.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include <machine/endian.h> ^~~~~~~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/param.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_PARAM_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/procfs.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_PROCFS_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/resource.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_RESOURCE_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include <sys/systeminfo.h> ^~~~~~~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/times.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_TIMES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/utsname.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_UTSNAME_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/socket.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_SOCKET_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/wait.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netinet/in.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_NETINET_IN_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netdb.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_NETDB_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Direct.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory
#include <Direct.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory
#include <Direct.h>
^~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include <Direct.h> ^~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_TIME_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
#include <Ws2tcpip.h>
^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
#include <Ws2tcpip.h>
^~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include <Ws2tcpip.h> ^~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_TYPES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
#include <WindowsX.h>
^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
#include <WindowsX.h>
^~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include <WindowsX.h> ^~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
#include <ieeefp.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
#include <ieeefp.h>
^~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include <ieeefp.h> ^~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_STDINT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pthread.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pthread.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_PTHREAD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: inttypes.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <inttypes.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_INTTYPES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: immintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <immintrin.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_IMMINTRIN_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: zmmintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <zmmintrin.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory
#include <zmmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <zmmintrin.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory
#include <zmmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include <zmmintrin.h> ^~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: setjmp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <setjmp.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SETJMP_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
#include <dos.h>
^~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
#include <dos.h>
^~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include <dos.h> ^~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fcntl.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FCNTL_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
#include <io.h>
^~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
#include <io.h>
^~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include <io.h> ^~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <malloc.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_MALLOC_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pwd.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_PWD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <strings.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_STRINGS_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_UNISTD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/sysinfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/sysinfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_SYSINFO_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
#include <machine/endian.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
#include <machine/endian.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include <machine/endian.h> ^~~~~~~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/param.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_PARAM_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/procfs.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_PROCFS_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/resource.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_RESOURCE_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include <sys/systeminfo.h> ^~~~~~~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/times.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_TIMES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/utsname.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_UTSNAME_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/socket.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_SOCKET_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/wait.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netinet/in.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_NETINET_IN_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netdb.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_NETDB_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Direct.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory
#include <Direct.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory
#include <Direct.h>
^~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include <Direct.h> ^~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_TIME_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
#include <Ws2tcpip.h>
^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
#include <Ws2tcpip.h>
^~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include <Ws2tcpip.h> ^~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_TYPES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
#include <WindowsX.h>
^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
#include <WindowsX.h>
^~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include <WindowsX.h> ^~~~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
#include <ieeefp.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
#include <ieeefp.h>
^~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include <ieeefp.h> ^~~~~~~~~~compilation terminated.:
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_STDINT_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pthread.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pthread.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_PTHREAD_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: inttypes.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <inttypes.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_INTTYPES_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: immintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <immintrin.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_IMMINTRIN_H" to "1"
================================================================================
TEST check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: zmmintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <zmmintrin.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory
#include <zmmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <zmmintrin.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory
#include <zmmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include <zmmintrin.h> ^~~~~~~~~~~~~compilation terminated.:
================================================================================
TEST checkRecursiveMacros from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:216)
TESTING: checkRecursiveMacros from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:216)
Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void a(int i, int j) {}
#define a(b) a(b,__LINE__)
int main() {
a(0);
;
return 0;
}
child config.headers 2.168840
================================================================================
TEST configureCacheDetails from config.utilities.cacheDetails(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78)
Try to determine the size and associativity of the cache.
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>
long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; }
int main() {
;
return 0;
}
Skipping determination of LEVEL1_DCACHE_LINESIZE in batch mode, using default 32
Defined "LEVEL1_DCACHE_LINESIZE" to "32"
child config.utilities.cacheDetails 0.053318
================================================================================
TEST check_struct_sigaction from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:43)
TESTING: check_struct_sigaction from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:43)
Checks if "struct sigaction" exists in signal.h. This check is for C89 check.
Checking for type: struct sigaction
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.types
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:18: warning: unused variable ���a��� [-Wunused-variable]
struct sigaction a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
#include<signal.h>
int main() {
struct sigaction a;;
return 0;
}
struct sigaction found
Defined "HAVE_STRUCT_SIGACTION" to "1"
================================================================================
TEST check__int64 from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:49)
TESTING: check__int64 from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:49)
Checks if __int64 exists. This is primarily for windows.
Checking for type: __int64
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:1: error: unknown type name ���__int64���; did you mean ���__int64_t���?
__int64 a;;
^~~~~~~
__int64_t
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:9: warning: unused variable ���a��� [-Wunused-variable]
__int64 a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
__int64 a;;
return 0;
}
__int64 found
================================================================================
TEST checkSizeTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:55)
TESTING: checkSizeTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:55)
Checks for types associated with sizes, such as size_t.
Checking for type: size_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:8: warning: unused variable ���a��� [-Wunused-variable]
size_t a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
size_t a;;
return 0;
}
size_t found
================================================================================
TEST checkFileTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:65)
TESTING: checkFileTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:65)
Checks for types associated with files, such as mode_t, off_t, etc.
Checking for type: mode_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:8: warning: unused variable ���a��� [-Wunused-variable]
mode_t a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
mode_t a;;
return 0;
}
mode_t found
Checking for type: off_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:7: warning: unused variable ���a��� [-Wunused-variable]
off_t a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
off_t a;;
return 0;
}
off_t found
================================================================================
TEST checkIntegerTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:60)
TESTING: checkIntegerTypes from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:60)
Checks for types associated with integers, such as int32_t.
Checking for type: int32_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:9: warning: unused variable ���a��� [-Wunused-variable]
int32_t a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
int32_t a;;
return 0;
}
int32_t found
================================================================================
TEST checkPID from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:71)
TESTING: checkPID from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:71)
Checks for pid_t, and defines it if necessary
Checking for type: pid_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:11:7: warning: unused variable ���a��� [-Wunused-variable]
pid_t a;;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
int main() {
pid_t a;;
return 0;
}
pid_t found
================================================================================
TEST checkUID from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:75)
TESTING: checkUID from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:75)
Checks for uid_t and gid_t, and defines them if necessary
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
================================================================================
TEST checkC99Complex from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:82)
TESTING: checkC99Complex from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:82)
Check for complex numbers in in C99 std
Note that since PETSc source code uses _Complex we test specifically for that, not complex
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:6:17: warning: variable ���x��� set but not used [-Wunused-but-set-variable]
double _Complex x;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex.h>
int main() {
double _Complex x;
x = I;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:6:17: warning: variable ���x��� set but not used [-Wunused-but-set-variable]
double _Complex x;
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex.h>
int main() {
double _Complex x;
x = I;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -lstdc++ -ldl
Defined "HAVE_C99_COMPLEX" to "1"
================================================================================
TEST checkCxxComplex from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:93)
TESTING: checkCxxComplex from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:93)
Check for complex numbers in namespace std
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex>
int main() {
std::complex<double> x;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -lstdc++ -ldl
Defined "HAVE_CXX_COMPLEX" to "1"
================================================================================
TEST checkFortranKind from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:114)
TESTING: checkFortranKind from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:114)
Checks whether selected_int_kind etc work USE_FORTRANKIND
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.F90
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.F90:4:43:
real(kind=selected_real_kind(10)) d
1
Warning: Unused variable ���d��� declared at (1) [-Wunused-variable]
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.F90:3:45:
integer(kind=selected_int_kind(10)) i
1
Warning: Unused variable ���i��� declared at (1) [-Wunused-variable]
Source:
program main
integer(kind=selected_int_kind(10)) i
real(kind=selected_real_kind(10)) d
end
Defined "USE_FORTRANKIND" to "1"
================================================================================
TEST checkConst from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:126)
TESTING: checkConst from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:126)
Checks for working const, and if not found defines it to empty string
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:25:5: warning: this ���if��� clause does not guard... [-Wmisleading-indentation]
if (x[0]);
^~
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:26:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ���if���
{ /* SCO 3.2v4 cc rejects this. */
^
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:25:10: warning: ���x[0]��� is used uninitialized in this function [-Wuninitialized]
if (x[0]);
~^~~
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:30:9: warning: ���t��� is used uninitialized in this function [-Wuninitialized]
*t++ = 0;
~^~
/p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c:46:25: warning: ���b��� is used uninitialized in this function [-Wuninitialized]
struct s *b; b->j = 5;
~~~~~^~~
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
/* Ultrix mips cc rejects this. */
typedef int charset[2]; const charset x;
/* SunOS 4.1.1 cc rejects this. */
char const *const *ccp;
char **p;
/* NEC SVR4.0.2 mips cc rejects this. */
struct point {int x, y;};
static struct point const zero = {0,0};
/* AIX XL C 1.02.0.0 rejects this.
It does not let you subtract one const X* pointer from another in an arm
of an if-expression whose if-part is not a constant expression */
const char *g = "string";
ccp = &g + (g ? g-g : 0);
/* HPUX 7.0 cc rejects these. */
++ccp;
p = (char**) ccp;
ccp = (char const *const *) p;
/* This section avoids unused variable warnings */
if (zero.x);
if (x[0]);
{ /* SCO 3.2v4 cc rejects this. */
char *t;
char const *s = 0 ? (char *) 0 : (char const *) 0;
*t++ = 0;
if (*s);
}
{ /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */
int x[] = {25, 17};
const int *foo = &x[0];
++foo;
}
{ /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */
typedef const int *iptr;
iptr p = 0;
++p;
}
{ /* AIX XL C 1.02.0.0 rejects this saying
"k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */
struct s { int j; const int *ap[3]; };
struct s *b; b->j = 5;
}
{ /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
const int foo = 10;
/* Get rid of unused variable warning */
if (foo);
}
;
return 0;
}
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: short
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(short)==2)*2-1];
Defined "SIZEOF_SHORT" to "2"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: int
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(int)==4)*2-1];
Defined "SIZEOF_INT" to "4"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: enum
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1];
Defined "SIZEOF_ENUM" to "4"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(long)==8)*2-1];
Defined "SIZEOF_LONG" to "8"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: void *
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(void *)==8)*2-1];
Defined "SIZEOF_VOID_P" to "8"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long long
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(long long)==8)*2-1];
Defined "SIZEOF_LONG_LONG" to "8"
================================================================================
TEST checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
TESTING: checkSizeof from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: size_t
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(size_t)==8)*2-1];
Defined "SIZEOF_SIZE_T" to "8"
================================================================================
TEST checkVisibility from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:216)
TESTING: checkVisibility from config.types(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/types.py:216)
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
__attribute__((visibility ("default"))) int foo(void);;
return 0;
}
Defined "USE_VISIBILITY_C" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.types/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
__attribute__((visibility ("default"))) int foo(void);;
return 0;
}
Defined "USE_VISIBILITY_CXX" to "1"
child config.types 1.678735
================================================================================
TEST configureMemAlign from PETSc.options.memAlign(/p/work2/tmondrag/moose/petsc/config/PETSc/options/memAlign.py:29)
TESTING: configureMemAlign from PETSc.options.memAlign(/p/work2/tmondrag/moose/petsc/config/PETSc/options/memAlign.py:29)
Choose alignment
Defined "MEMALIGN" to "16"
Memory alignment is 16
child PETSc.options.memAlign 0.001174
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for functions [handle_sigfpes] in library ['fpe'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
static void _check_handle_sigfpes() { handle_sigfpes(); }
int main() {
_check_handle_sigfpes();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lfpe -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for functions [socket] in library ['socket', 'nsl'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
static void _check_socket() { socket(); }
int main() {
_check_socket();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for functions [handle_sigfpes] in library ['fpe'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
static void _check_handle_sigfpes() { handle_sigfpes(); }
int main() {
_check_handle_sigfpes();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lfpe -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for functions [socket] in library ['socket', 'nsl'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
static void _check_socket() { socket(); }
int main() {
_check_socket();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
================================================================================
TEST checkMath from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:264)
TESTING: checkMath from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:264)
Check for sin() in libm, the math library
Checking for functions [sin floor log10 pow] in library [''] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <stdio.h>
double sin(double);
static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y);
; }
#include <stdio.h>
double floor(double);
static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y);
; }
#include <stdio.h>
double log10(double);
static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y);
; }
#include <stdio.h>
double pow(double, double);
static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y);
; }
int main() {
_check_sin();
_check_floor();
_check_log10();
_check_pow();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.2.5'
/usr/bin/ld: /lib64/libm.so.6: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
Checking for functions [sin floor log10 pow] in library ['m'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <stdio.h>
double sin(double);
static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y);
; }
#include <stdio.h>
double floor(double);
static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y);
; }
#include <stdio.h>
double log10(double);
static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y);
; }
#include <stdio.h>
double pow(double, double);
static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y);
; }
int main() {
_check_sin();
_check_floor();
_check_log10();
_check_pow();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lm -lstdc++ -ldl
Defined "HAVE_LIBM" to "1"
CheckMath: using math library ['libm.a']
================================================================================
TEST checkMathErf from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:283)
TESTING: checkMathErf from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:283)
Check for erf() in libm, the math library
Checking for functions [erf] in library ['libm.a'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c: In function ���_check_erf���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:74: warning: variable ���y��� set but not used [-Wunused-but-set-variable]
static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); }
^
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); }
int main() {
_check_erf();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lm -lstdc++ -ldl
Defined "HAVE_LIBM" to "1"
erf() found
Defined "HAVE_ERF" to "1"
================================================================================
TEST checkMathTgamma from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:292)
TESTING: checkMathTgamma from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:292)
Check for tgamma() in libm, the math library
Checking for functions [tgamma] in library ['libm.a'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c: In function ���_check_tgamma���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:83: warning: variable ���y��� set but not used [-Wunused-but-set-variable]
static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); }
^
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); }
int main() {
_check_tgamma();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lm -lstdc++ -ldl
Defined "HAVE_LIBM" to "1"
tgamma() found
Defined "HAVE_TGAMMA" to "1"
================================================================================
TEST checkMathFenv from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:301)
TESTING: checkMathFenv from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:301)
Checks if <fenv.h> can be used with FE_DFL_ENV
Checking for functions [fesetenv] in library ['libm.a'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <fenv.h>
static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; }
int main() {
_check_fesetenv();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lm -lstdc++ -ldl
Defined "HAVE_LIBM" to "1"
Defined "HAVE_FENV_H" to "1"
================================================================================
TEST checkMathLog2 from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:309)
TESTING: checkMathLog2 from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:309)
Check for log2() in libm, the math library
Checking for functions [log2] in library ['libm.a'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c: In function ���_check_log2���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:81: warning: unused variable ���y��� [-Wunused-variable]
static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); }
^
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); }
int main() {
_check_log2();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lm -lstdc++ -ldl
Defined "HAVE_LIBM" to "1"
log2() found
Defined "HAVE_LOG2" to "1"
================================================================================
TEST checkRealtime from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:318)
TESTING: checkRealtime from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:318)
Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions)
Checking for functions [clock_gettime] in library [''] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <time.h>
static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; }
int main() {
_check_clock_gettime();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lstdc++ -ldl
realtime functions are linked in by default
================================================================================
TEST checkDynamic from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:334)
TESTING: checkDynamic from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:334)
Check for the header and libraries necessary for dynamic library manipulation
Checking for functions [dlopen] in library ['dl'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen();
static void _check_dlopen() { dlopen(); }
int main() {
_check_dlopen();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -ldl -lstdc++ -ldl
Defined "HAVE_LIBDL" to "1"
Checking for header: dlfcn.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_DLFCN_H" to "1"
child config.libraries 1.576837
================================================================================
TEST configureLibraryOptions from PETSc.options.libraryOptions(/p/work2/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:37)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/p/work2/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:37)
Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS
Defined "USE_LOG" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -qversion
Defined "USE_MALLOC_COALESCED" to "1"
Defined "USE_INFO" to "1"
Defined "USE_CTABLE" to "1"
Defined "USE_BACKWARD_LOOP" to "1"
**********Checking if running on BGL/IBM detected
Checking for functions [bgl_perfctr_void] in library [''] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char bgl_perfctr_void();
static void _check_bgl_perfctr_void() { bgl_perfctr_void(); }
int main() {
_check_bgl_perfctr_void();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o: in function `_check_bgl_perfctr_void':
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void'
collect2: error: ld returned 1 exit status
Checking for functions [ADIOI_BGL_Open] in library [''] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ADIOI_BGL_Open();
static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); }
int main() {
_check_ADIOI_BGL_Open();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open':
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open'
collect2: error: ld returned 1 exit status
*********BGL/IBM test failure
Defined "USE_AVX512_KERNELS" to "1"
Defined "Alignx(a,b)" to " "
================================================================================
TEST configureISColorValueType from PETSc.options.libraryOptions(/p/work2/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:95)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/p/work2/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:95)
Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor
Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT"
Defined "IS_COLORING_MAX" to "USHRT_MAX"
Defined "IS_COLOR_VALUE_TYPE" to "short"
Defined "IS_COLOR_VALUE_TYPE_F" to "integer2"
child PETSc.options.libraryOptions 0.305376
child config.atomics 0.000011
================================================================================
TEST checkSysinfo from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:106)
TESTING: checkSysinfo from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:106)
Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG
Checking for functions [sysinfo]
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.functions
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sysinfo();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_sysinfo) || defined (__stub___sysinfo)
sysinfo_will_always_fail_with_ENOSYS();
#else
sysinfo();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_SYSINFO" to "1"
Checking for header: sys/sysinfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/sysinfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Defined "HAVE_SYS_SYSINFO_H" to "1"
Checking for header: sys/systeminfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
#include <sys/systeminfo.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include <sys/systeminfo.h> ^~~~~~~~~~~~~~~~~~compilation terminated.:
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers"
# error "Cannot check sysinfo without special headers"
^~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:13:30: warning: implicit declaration of function ���sysinfo��� [-Wimplicit-function-declaration]
char buf[10]; long count=10; sysinfo(1, buf, count);
^~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef HAVE_SYS_SYSINFO_H
# include <sys/sysinfo.h>
#elif defined(HAVE_SYS_SYSTEMINFO_H)
# include <sys/systeminfo.h>
#else
# error "Cannot check sysinfo without special headers"
#endif
int main() {
char buf[10]; long count=10; sysinfo(1, buf, count);
;
return 0;
}
Compile failed inside link
================================================================================
TEST checkVPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:125)
TESTING: checkVPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:125)
Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;
vprintf( "%d", Argp );
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
================================================================================
TEST checkVFPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:131)
TESTING: checkVFPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:131)
Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;
vfprintf(stdout, "%d", Argp );
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
================================================================================
TEST checkVSNPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:137)
TESTING: checkVSNPrintf from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:137)
Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;char str[6];
vsnprintf(str,5, "%d", Argp );
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_VSNPRINTF" to "1"
================================================================================
TEST checkNanosleep from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:167)
TESTING: checkNanosleep from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:167)
Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>
int main() {
struct timespec tp;
tp.tv_sec = 0;
tp.tv_nsec = (long)(1e9);
nanosleep(&tp,0);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_NANOSLEEP" to "1"
================================================================================
TEST checkMemmove from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:173)
TESTING: checkMemmove from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:173)
Check for functional memmove() - as MS VC requires correct includes to for this test
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <string.h>
int main() {
char c1[1], c2[1] = "c";
size_t n=1;
memmove(c1,c2,n);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_MEMMOVE" to "1"
================================================================================
TEST checkSignalHandlerType from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:143)
TESTING: checkSignalHandlerType from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:143)
Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
static void myhandler(int sig) {}
int main() {
signal(SIGFPE,myhandler);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "SIGNAL_CAST" to " "
================================================================================
TEST checkFreeReturnType from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:153)
TESTING: checkFreeReturnType from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:153)
Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be
int ierr; void *p; ierr = free(p); return 0;
^
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:6:5: warning: variable ���ierr��� set but not used [-Wunused-but-set-variable]
int ierr; void *p; ierr = free(p); return 0;
^~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
int main() {
int ierr; void *p; ierr = free(p); return 0;
;
return 0;
}
Compile failed inside link
================================================================================
TEST checkVariableArgumentLists from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:159)
TESTING: checkVariableArgumentLists from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:159)
Checks whether the variable argument list functionality is working
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdarg.h>
int main() {
va_list l1, l2;
va_copy(l1, l2);
return 0;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_VA_COPY" to "1"
================================================================================
TEST checkClassify from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:85)
TESTING: checkClassify from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:85)
Recursive decompose to rapidly classify functions as found or missing
To confirm that a function is missing, we require a compile/link
failure with only that function in a compilation unit. In contrast,
we can confirm that many functions are present by compiling them all
together in a large compilation unit. We optimistically compile
everything together, then trim all functions that were named in the
error message and bisect the result. The trimming is only an
optimization to increase the likelihood of a big-batch compile
succeeding; we do not rely on the compiler naming missing functions.
Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen drand48 socket popen getrusage _mkdir time stricmp]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ���snprintf��� [-Wbuiltin-declaration-mismatch]
char snprintf();
^~~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ���bzero��� [-Wbuiltin-declaration-mismatch]
char bzero();
^~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:34:6: warning: conflicting types for built-in function ���fork��� [-Wbuiltin-declaration-mismatch]
char fork();
^~~~
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:43:6: warning: conflicting types for built-in function ���strcasecmp��� [-Wbuiltin-declaration-mismatch]
char strcasecmp();
^~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char rand();
char getdomainname();
char _access();
char snprintf();
char realpath();
char dlsym();
char bzero();
char _getcwd();
char getwd();
char uname();
char _lseek();
char sleep();
char _sleep();
char lseek();
char usleep();
char dlclose();
char gethostname();
char clock();
char access();
char _snprintf();
char dlerror();
char fork();
char getpagesize();
char sbreak();
char memalign();
char getcwd();
char gethostbyname();
char readlink();
char _set_output_format();
char PXFGETARG();
char strcasecmp();
char dlopen();
char drand48();
char socket();
char popen();
char getrusage();
char _mkdir();
char time();
char stricmp();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_rand) || defined (__stub___rand)
rand_will_always_fail_with_ENOSYS();
#else
rand();
#endif
#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
getdomainname_will_always_fail_with_ENOSYS();
#else
getdomainname();
#endif
#if defined (__stub__access) || defined (__stub____access)
_access_will_always_fail_with_ENOSYS();
#else
_access();
#endif
#if defined (__stub_snprintf) || defined (__stub___snprintf)
snprintf_will_always_fail_with_ENOSYS();
#else
snprintf();
#endif
#if defined (__stub_realpath) || defined (__stub___realpath)
realpath_will_always_fail_with_ENOSYS();
#else
realpath();
#endif
#if defined (__stub_dlsym) || defined (__stub___dlsym)
dlsym_will_always_fail_with_ENOSYS();
#else
dlsym();
#endif
#if defined (__stub_bzero) || defined (__stub___bzero)
bzero_will_always_fail_with_ENOSYS();
#else
bzero();
#endif
#if defined (__stub__getcwd) || defined (__stub____getcwd)
_getcwd_will_always_fail_with_ENOSYS();
#else
_getcwd();
#endif
#if defined (__stub_getwd) || defined (__stub___getwd)
getwd_will_always_fail_with_ENOSYS();
#else
getwd();
#endif
#if defined (__stub_uname) || defined (__stub___uname)
uname_will_always_fail_with_ENOSYS();
#else
uname();
#endif
#if defined (__stub__lseek) || defined (__stub____lseek)
_lseek_will_always_fail_with_ENOSYS();
#else
_lseek();
#endif
#if defined (__stub_sleep) || defined (__stub___sleep)
sleep_will_always_fail_with_ENOSYS();
#else
sleep();
#endif
#if defined (__stub__sleep) || defined (__stub____sleep)
_sleep_will_always_fail_with_ENOSYS();
#else
_sleep();
#endif
#if defined (__stub_lseek) || defined (__stub___lseek)
lseek_will_always_fail_with_ENOSYS();
#else
lseek();
#endif
#if defined (__stub_usleep) || defined (__stub___usleep)
usleep_will_always_fail_with_ENOSYS();
#else
usleep();
#endif
#if defined (__stub_dlclose) || defined (__stub___dlclose)
dlclose_will_always_fail_with_ENOSYS();
#else
dlclose();
#endif
#if defined (__stub_gethostname) || defined (__stub___gethostname)
gethostname_will_always_fail_with_ENOSYS();
#else
gethostname();
#endif
#if defined (__stub_clock) || defined (__stub___clock)
clock_will_always_fail_with_ENOSYS();
#else
clock();
#endif
#if defined (__stub_access) || defined (__stub___access)
access_will_always_fail_with_ENOSYS();
#else
access();
#endif
#if defined (__stub__snprintf) || defined (__stub____snprintf)
_snprintf_will_always_fail_with_ENOSYS();
#else
_snprintf();
#endif
#if defined (__stub_dlerror) || defined (__stub___dlerror)
dlerror_will_always_fail_with_ENOSYS();
#else
dlerror();
#endif
#if defined (__stub_fork) || defined (__stub___fork)
fork_will_always_fail_with_ENOSYS();
#else
fork();
#endif
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
getpagesize_will_always_fail_with_ENOSYS();
#else
getpagesize();
#endif
#if defined (__stub_sbreak) || defined (__stub___sbreak)
sbreak_will_always_fail_with_ENOSYS();
#else
sbreak();
#endif
#if defined (__stub_memalign) || defined (__stub___memalign)
memalign_will_always_fail_with_ENOSYS();
#else
memalign();
#endif
#if defined (__stub_getcwd) || defined (__stub___getcwd)
getcwd_will_always_fail_with_ENOSYS();
#else
getcwd();
#endif
#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
gethostbyname_will_always_fail_with_ENOSYS();
#else
gethostbyname();
#endif
#if defined (__stub_readlink) || defined (__stub___readlink)
readlink_will_always_fail_with_ENOSYS();
#else
readlink();
#endif
#if defined (__stub__set_output_format) || defined (__stub____set_output_format)
_set_output_format_will_always_fail_with_ENOSYS();
#else
_set_output_format();
#endif
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
PXFGETARG_will_always_fail_with_ENOSYS();
#else
PXFGETARG();
#endif
#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
strcasecmp_will_always_fail_with_ENOSYS();
#else
strcasecmp();
#endif
#if defined (__stub_dlopen) || defined (__stub___dlopen)
dlopen_will_always_fail_with_ENOSYS();
#else
dlopen();
#endif
#if defined (__stub_drand48) || defined (__stub___drand48)
drand48_will_always_fail_with_ENOSYS();
#else
drand48();
#endif
#if defined (__stub_socket) || defined (__stub___socket)
socket_will_always_fail_with_ENOSYS();
#else
socket();
#endif
#if defined (__stub_popen) || defined (__stub___popen)
popen_will_always_fail_with_ENOSYS();
#else
popen();
#endif
#if defined (__stub_getrusage) || defined (__stub___getrusage)
getrusage_will_always_fail_with_ENOSYS();
#else
getrusage();
#endif
#if defined (__stub__mkdir) || defined (__stub____mkdir)
_mkdir_will_always_fail_with_ENOSYS();
#else
_mkdir();
#endif
#if defined (__stub_time) || defined (__stub___time)
time_will_always_fail_with_ENOSYS();
#else
time();
#endif
#if defined (__stub_stricmp) || defined (__stub___stricmp)
stricmp_will_always_fail_with_ENOSYS();
#else
stricmp();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:110: warning: the `getwd' function is dangerous and should not be used.
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:74: undefined reference to `_access'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:104: undefined reference to `_getcwd'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:122: undefined reference to `_lseek'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:134: undefined reference to `_sleep'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:176: undefined reference to `_snprintf'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:200: undefined reference to `sbreak'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:230: undefined reference to `_set_output_format'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:236: undefined reference to `PXFGETARG'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:278: undefined reference to `_mkdir'
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:290: undefined reference to `stricmp'
collect2: error: ld returned 1 exit status
Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ���bzero��� [-Wbuiltin-declaration-mismatch]
char bzero();
^~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char rand();
char getdomainname();
char realpath();
char dlsym();
char bzero();
char uname();
char usleep();
char dlclose();
char gethostname();
char clock();
char dlerror();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_rand) || defined (__stub___rand)
rand_will_always_fail_with_ENOSYS();
#else
rand();
#endif
#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
getdomainname_will_always_fail_with_ENOSYS();
#else
getdomainname();
#endif
#if defined (__stub_realpath) || defined (__stub___realpath)
realpath_will_always_fail_with_ENOSYS();
#else
realpath();
#endif
#if defined (__stub_dlsym) || defined (__stub___dlsym)
dlsym_will_always_fail_with_ENOSYS();
#else
dlsym();
#endif
#if defined (__stub_bzero) || defined (__stub___bzero)
bzero_will_always_fail_with_ENOSYS();
#else
bzero();
#endif
#if defined (__stub_uname) || defined (__stub___uname)
uname_will_always_fail_with_ENOSYS();
#else
uname();
#endif
#if defined (__stub_usleep) || defined (__stub___usleep)
usleep_will_always_fail_with_ENOSYS();
#else
usleep();
#endif
#if defined (__stub_dlclose) || defined (__stub___dlclose)
dlclose_will_always_fail_with_ENOSYS();
#else
dlclose();
#endif
#if defined (__stub_gethostname) || defined (__stub___gethostname)
gethostname_will_always_fail_with_ENOSYS();
#else
gethostname();
#endif
#if defined (__stub_clock) || defined (__stub___clock)
clock_will_always_fail_with_ENOSYS();
#else
clock();
#endif
#if defined (__stub_dlerror) || defined (__stub___dlerror)
dlerror_will_always_fail_with_ENOSYS();
#else
dlerror();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_RAND" to "1"
Defined "HAVE_GETDOMAINNAME" to "1"
Defined "HAVE_REALPATH" to "1"
Defined "HAVE_DLSYM" to "1"
Defined "HAVE_BZERO" to "1"
Defined "HAVE_UNAME" to "1"
Defined "HAVE_USLEEP" to "1"
Defined "HAVE_DLCLOSE" to "1"
Defined "HAVE_GETHOSTNAME" to "1"
Defined "HAVE_CLOCK" to "1"
Defined "HAVE_DLERROR" to "1"
Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ���fork��� [-Wbuiltin-declaration-mismatch]
char fork();
^~~~
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:18:6: warning: conflicting types for built-in function ���strcasecmp��� [-Wbuiltin-declaration-mismatch]
char strcasecmp();
^~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char fork();
char getpagesize();
char memalign();
char gethostbyname();
char readlink();
char strcasecmp();
char dlopen();
char drand48();
char socket();
char popen();
char getrusage();
char time();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_fork) || defined (__stub___fork)
fork_will_always_fail_with_ENOSYS();
#else
fork();
#endif
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
getpagesize_will_always_fail_with_ENOSYS();
#else
getpagesize();
#endif
#if defined (__stub_memalign) || defined (__stub___memalign)
memalign_will_always_fail_with_ENOSYS();
#else
memalign();
#endif
#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
gethostbyname_will_always_fail_with_ENOSYS();
#else
gethostbyname();
#endif
#if defined (__stub_readlink) || defined (__stub___readlink)
readlink_will_always_fail_with_ENOSYS();
#else
readlink();
#endif
#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
strcasecmp_will_always_fail_with_ENOSYS();
#else
strcasecmp();
#endif
#if defined (__stub_dlopen) || defined (__stub___dlopen)
dlopen_will_always_fail_with_ENOSYS();
#else
dlopen();
#endif
#if defined (__stub_drand48) || defined (__stub___drand48)
drand48_will_always_fail_with_ENOSYS();
#else
drand48();
#endif
#if defined (__stub_socket) || defined (__stub___socket)
socket_will_always_fail_with_ENOSYS();
#else
socket();
#endif
#if defined (__stub_popen) || defined (__stub___popen)
popen_will_always_fail_with_ENOSYS();
#else
popen();
#endif
#if defined (__stub_getrusage) || defined (__stub___getrusage)
getrusage_will_always_fail_with_ENOSYS();
#else
getrusage();
#endif
#if defined (__stub_time) || defined (__stub___time)
time_will_always_fail_with_ENOSYS();
#else
time();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_FORK" to "1"
Defined "HAVE_GETPAGESIZE" to "1"
Defined "HAVE_MEMALIGN" to "1"
Defined "HAVE_GETHOSTBYNAME" to "1"
Defined "HAVE_READLINK" to "1"
Defined "HAVE_STRCASECMP" to "1"
Defined "HAVE_DLOPEN" to "1"
Defined "HAVE_DRAND48" to "1"
Defined "HAVE_SOCKET" to "1"
Defined "HAVE_POPEN" to "1"
Defined "HAVE_GETRUSAGE" to "1"
Defined "HAVE_TIME" to "1"
Checking for functions [_access]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__access) || defined (__stub____access)
_access_will_always_fail_with_ENOSYS();
#else
_access();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_access'
collect2: error: ld returned 1 exit status
Checking for functions [snprintf]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ���snprintf��� [-Wbuiltin-declaration-mismatch]
char snprintf();
^~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char snprintf();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_snprintf) || defined (__stub___snprintf)
snprintf_will_always_fail_with_ENOSYS();
#else
snprintf();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_SNPRINTF" to "1"
Checking for functions [_getcwd]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__getcwd) || defined (__stub____getcwd)
_getcwd_will_always_fail_with_ENOSYS();
#else
_getcwd();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_getcwd'
collect2: error: ld returned 1 exit status
Checking for functions [getwd]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getwd();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_getwd) || defined (__stub___getwd)
getwd_will_always_fail_with_ENOSYS();
#else
getwd();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker:
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.
Defined "HAVE_GETWD" to "1"
Checking for functions [_lseek]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__lseek) || defined (__stub____lseek)
_lseek_will_always_fail_with_ENOSYS();
#else
_lseek();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_lseek'
collect2: error: ld returned 1 exit status
Checking for functions [sleep]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sleep();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_sleep) || defined (__stub___sleep)
sleep_will_always_fail_with_ENOSYS();
#else
sleep();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_SLEEP" to "1"
Checking for functions [_sleep]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__sleep) || defined (__stub____sleep)
_sleep_will_always_fail_with_ENOSYS();
#else
_sleep();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_sleep'
collect2: error: ld returned 1 exit status
Checking for functions [lseek]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char lseek();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_lseek) || defined (__stub___lseek)
lseek_will_always_fail_with_ENOSYS();
#else
lseek();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_LSEEK" to "1"
Checking for functions [access]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char access();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_access) || defined (__stub___access)
access_will_always_fail_with_ENOSYS();
#else
access();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_ACCESS" to "1"
Checking for functions [_snprintf]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__snprintf) || defined (__stub____snprintf)
_snprintf_will_always_fail_with_ENOSYS();
#else
_snprintf();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_snprintf'
collect2: error: ld returned 1 exit status
Checking for functions [sbreak]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_sbreak) || defined (__stub___sbreak)
sbreak_will_always_fail_with_ENOSYS();
#else
sbreak();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `sbreak'
collect2: error: ld returned 1 exit status
Checking for functions [getcwd]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getcwd();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_getcwd) || defined (__stub___getcwd)
getcwd_will_always_fail_with_ENOSYS();
#else
getcwd();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_GETCWD" to "1"
Checking for functions [_set_output_format]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _set_output_format();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__set_output_format) || defined (__stub____set_output_format)
_set_output_format_will_always_fail_with_ENOSYS();
#else
_set_output_format();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_set_output_format'
collect2: error: ld returned 1 exit status
Checking for functions [PXFGETARG]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
PXFGETARG_will_always_fail_with_ENOSYS();
#else
PXFGETARG();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `PXFGETARG'
collect2: error: ld returned 1 exit status
Checking for functions [_mkdir]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _mkdir();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub__mkdir) || defined (__stub____mkdir)
_mkdir_will_always_fail_with_ENOSYS();
#else
_mkdir();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `_mkdir'
collect2: error: ld returned 1 exit status
Checking for functions [stricmp]
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp();
#ifdef __cplusplus
}
#endif
int main() {
#if defined (__stub_stricmp) || defined (__stub___stricmp)
stricmp_will_always_fail_with_ENOSYS();
#else
stricmp();
#endif
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o: in function `main':
/p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c:24: undefined reference to `stricmp'
collect2: error: ld returned 1 exit status
================================================================================
TEST checkMmap from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:179)
TESTING: checkMmap from config.functions(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:179)
Check for functional mmap() to allocate shared memory and define HAVE_MMAP
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/mman.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <fcntl.h>
int main() {
int fd;
fd=open("/tmp/file",O_RDWR);
mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.functions/conftest.o -lstdc++ -ldl
Defined "HAVE_MMAP" to "1"
child config.functions 4.459111
================================================================================
TEST configureMemorySize from config.utilities.getResidentSetSize(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
Try to determine how to measure the memory usage
child config.utilities.getResidentSetSize 0.000504
================================================================================
TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
Check for the mechanism to retrieve command line arguments in Fortran
Checking for functions [] in library [''] []
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.F90
Successful compile:
Source:
program main
integer i
character*(80) arg
i = command_argument_count()
call get_command_argument(i,arg)
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lstdc++ -ldl
Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1"
child config.utilities.fortranCommandLine 0.185642
================================================================================
TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13)
Checks if certain feature test macros are support
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory
#include <sysctl.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#define _POSIX_C_SOURCE 200112L
#include <sysctl.h>
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _BSD_SOURCE
#include<stdlib.h>
int main() {
;
return 0;
}
Defined "_BSD_SOURCE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _DEFAULT_SOURCE
#include<stdlib.h>
int main() {
;
return 0;
}
Defined "_DEFAULT_SOURCE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _GNU_SOURCE
#include <sched.h>
int main() {
cpu_set_t mset;
CPU_ZERO(&mset);;
return 0;
}
Defined "_GNU_SOURCE" to "1"
child config.utilities.featureTestMacros 0.210373
================================================================================
TEST configureMissingUtypeTypedefs from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:55)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:55)
Checks if u_short is undefined
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c:6:9: warning: unused variable ���foo��� [-Wunused-variable]
u_short foo;
^~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
int main() {
u_short foo;
;
return 0;
}
================================================================================
TEST configureMissingFunctions from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:61)
TESTING: configureMissingFunctions from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:61)
Checks for SOCKETS
================================================================================
TEST configureMissingSignals from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:79)
TESTING: configureMissingSignals from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:79)
Check for missing signals, and define MISSING_<signal name> if necessary
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGABRT;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGALRM;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGBUS;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGCHLD;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGCONT;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGFPE;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGHUP;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGILL;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGINT;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGKILL;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGPIPE;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGQUIT;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSEGV;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSTOP;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSYS;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTERM;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTRAP;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTSTP;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGURG;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGUSR1;
if (i);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGUSR2;
if (i);
;
return 0;
}
================================================================================
TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:96)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:96)
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif
#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif
#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif
#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif
int main() {
int (*getdomainname_ptr)(char*,size_t) = getdomainname;
char test[10];
if (getdomainname_ptr(test,10)) return 1;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif
#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif
#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif
#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif
int main() {
int (*getdomainname_ptr)(char*,size_t) = getdomainname;
char test[10];
if (getdomainname_ptr(test,10)) return 1;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -lstdc++ -ldl
================================================================================
TEST configureMissingSrandPrototype from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:121)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:121)
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif
#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif
#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif
#include <stdlib.h>
int main() {
double (*drand48_ptr)(void) = drand48;
void (*srand48_ptr)(long int) = srand48;
long int seed=10;
srand48_ptr(seed);
if (drand48_ptr() > 0.5) return 1;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.cc
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif
#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif
#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif
#include <stdlib.h>
int main() {
double (*drand48_ptr)(void) = drand48;
void (*srand48_ptr)(long int) = srand48;
long int seed=10;
srand48_ptr(seed);
if (drand48_ptr() > 0.5) return 1;
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing/conftest.o -lstdc++ -ldl
child config.utilities.missing 1.579093
================================================================================
TEST configureFPTrap from config.utilities.FPTrap(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureFPTrap from config.utilities.FPTrap(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/utilities/FPTrap.py:27)
Checking the handling of floating point traps
Checking for header: sigfpe.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sigfpe.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory
#include <sigfpe.h>
^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sigfpe.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory
#include <sigfpe.h>
^~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include <sigfpe.h> ^~~~~~~~~~compilation terminated.:
Checking for header: fpxcp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fpxcp.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory
#include <fpxcp.h>
^~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <fpxcp.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory
#include <fpxcp.h>
^~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include <fpxcp.h> ^~~~~~~~~compilation terminated.:
Checking for header: floatingpoint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <floatingpoint.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory
#include <floatingpoint.h>
^~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <floatingpoint.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory
#include <floatingpoint.h>
^~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include <floatingpoint.h> ^~~~~~~~~~~~~~~~~compilation terminated.:
child config.utilities.FPTrap 0.058791
================================================================================
TEST configureScalarType from PETSc.options.scalarTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:40)
TESTING: configureScalarType from PETSc.options.scalarTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:40)
Choose between real and complex numbers
Scalar type is real
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ���a��� [-Wunused-variable]
double b = 2.0; int a = isnormal(b);
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
int main() {
double b = 2.0; int a = isnormal(b);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl
Defined "HAVE_ISNORMAL" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ���a��� [-Wunused-variable]
double b = 2.0; int a = isnan(b);
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
int main() {
double b = 2.0; int a = isnan(b);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl
Defined "HAVE_ISNAN" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ���a��� [-Wunused-variable]
double b = 2.0; int a = isinf(b);
^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
int main() {
double b = 2.0; int a = isinf(b);
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl
Defined "HAVE_ISINF" to "1"
================================================================================
TEST configurePrecision from PETSc.options.scalarTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:81)
TESTING: configurePrecision from PETSc.options.scalarTypes(/p/work2/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:81)
Set the default real number precision for PETSc objects
Checking C compiler works with __float128
Checking for functions [logq] in library ['quadmath'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c: In function ���_check_logq���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:43: warning: ���f��� is used uninitialized in this function [-Wuninitialized]
static void _check_logq() { __float128 f; logq(f);; }
^~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:40: note: ���f��� was declared here
static void _check_logq() { __float128 f; logq(f);; }
^
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq() { __float128 f; logq(f);; }
int main() {
_check_logq();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_LIBQUADMATH" to "1"
C compiler with quadmath library
Checking Fortran works with quadmath library
Checking for functions [ ] in library ['quadmath'] []
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.F90
Successful compile:
Source:
program main
real*16 s,w; w = 2.0 ;s = cos(w)
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_LIBQUADMATH" to "1"
Fortran works with quadmath library
Checking for functions [logq] in library ['quadmath'] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c: In function ���_check_logq���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:43: warning: ���f��� is used uninitialized in this function [-Wuninitialized]
static void _check_logq() { __float128 f; logq(f);; }
^~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5:40: note: ���f��� was declared here
static void _check_logq() { __float128 f; logq(f);; }
^
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq() { __float128 f; logq(f);; }
int main() {
_check_logq();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_LIBQUADMATH" to "1"
Adding ['quadmath'] to LIBS
Defined "HAVE_REAL___FLOAT128" to "1"
Defined "USE_REAL_DOUBLE" to "1"
Defined make macro "PETSC_SCALAR_SIZE" to "64"
Precision is double
child PETSc.options.scalarTypes 1.060660
================================================================================
TEST configureMkdir from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:22)
TESTING: configureMkdir from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:22)
Make sure we can have mkdir automatically make intermediate directories
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mkdir...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mkdir...not found
Checking for program /usr/local/krb5/bin/mkdir...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mkdir...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/mkdir...not found
Checking for program /opt/clmgr/sbin/mkdir...not found
Checking for program /opt/clmgr/bin/mkdir...not found
Checking for program /opt/sgi/sbin/mkdir...not found
Checking for program /opt/sgi/bin/mkdir...not found
Checking for program /usr/local/bin/mkdir...not found
Checking for program /usr/bin/mkdir...found
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/mkdir -p .conftest/tmp
Adding -p flag to /usr/bin/mkdir -p to automatically create directories
Defined make macro "MKDIR" to "/usr/bin/mkdir -p"
================================================================================
TEST configureAutoreconf from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:44)
TESTING: configureAutoreconf from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:44)
Check for autoreconf
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/autoreconf...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/autoreconf...not found
Checking for program /usr/local/krb5/bin/autoreconf...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/autoreconf...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/autoreconf...not found
Checking for program /opt/clmgr/sbin/autoreconf...not found
Checking for program /opt/clmgr/bin/autoreconf...not found
Checking for program /opt/sgi/sbin/autoreconf...not found
Checking for program /opt/sgi/bin/autoreconf...not found
Checking for program /usr/local/bin/autoreconf...not found
Checking for program /usr/bin/autoreconf...found
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.programs
Running Executable WITHOUT threads to time it out
Executing: ['/usr/bin/autoreconf']
autoreconf test successful!
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/libtoolize...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/libtoolize...not found
Checking for program /usr/local/krb5/bin/libtoolize...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/libtoolize...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/libtoolize...not found
Checking for program /opt/clmgr/sbin/libtoolize...not found
Checking for program /opt/clmgr/bin/libtoolize...not found
Checking for program /opt/sgi/sbin/libtoolize...not found
Checking for program /opt/sgi/bin/libtoolize...not found
Checking for program /usr/local/bin/libtoolize...not found
Checking for program /usr/bin/libtoolize...found
================================================================================
TEST configurePrograms from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:71)
TESTING: configurePrograms from config.programs(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:71)
Check for the programs needed to build and run PETSc
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/sh...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/sh...not found
Checking for program /usr/local/krb5/bin/sh...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/sh...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/sh...not found
Checking for program /opt/clmgr/sbin/sh...not found
Checking for program /opt/clmgr/bin/sh...not found
Checking for program /opt/sgi/sbin/sh...not found
Checking for program /opt/sgi/bin/sh...not found
Checking for program /usr/local/bin/sh...not found
Checking for program /usr/bin/sh...found
Defined make macro "SHELL" to "/usr/bin/sh"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/sed...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/sed...not found
Checking for program /usr/local/krb5/bin/sed...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/sed...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/sed...not found
Checking for program /opt/clmgr/sbin/sed...not found
Checking for program /opt/clmgr/bin/sed...not found
Checking for program /opt/sgi/sbin/sed...not found
Checking for program /opt/sgi/bin/sed...not found
Checking for program /usr/local/bin/sed...not found
Checking for program /usr/bin/sed...found
Defined make macro "SED" to "/usr/bin/sed"
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/sed -i s/sed/sd/g "/p/work2/tmondrag/petsc-N5i8ny/config.programs/sed1"
Adding SEDINPLACE cmd: /usr/bin/sed -i
Defined make macro "SEDINPLACE" to "/usr/bin/sed -i"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/mv...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/mv...not found
Checking for program /usr/local/krb5/bin/mv...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/mv...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/mv...not found
Checking for program /opt/clmgr/sbin/mv...not found
Checking for program /opt/clmgr/bin/mv...not found
Checking for program /opt/sgi/sbin/mv...not found
Checking for program /opt/sgi/bin/mv...not found
Checking for program /usr/local/bin/mv...not found
Checking for program /usr/bin/mv...found
Defined make macro "MV" to "/usr/bin/mv"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/cp...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/cp...not found
Checking for program /usr/local/krb5/bin/cp...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/cp...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/cp...not found
Checking for program /opt/clmgr/sbin/cp...not found
Checking for program /opt/clmgr/bin/cp...not found
Checking for program /opt/sgi/sbin/cp...not found
Checking for program /opt/sgi/bin/cp...not found
Checking for program /usr/local/bin/cp...not found
Checking for program /usr/bin/cp...found
Defined make macro "CP" to "/usr/bin/cp"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/grep...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/grep...not found
Checking for program /usr/local/krb5/bin/grep...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/grep...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/grep...not found
Checking for program /opt/clmgr/sbin/grep...not found
Checking for program /opt/clmgr/bin/grep...not found
Checking for program /opt/sgi/sbin/grep...not found
Checking for program /opt/sgi/bin/grep...not found
Checking for program /usr/local/bin/grep...not found
Checking for program /usr/bin/grep...found
Defined make macro "GREP" to "/usr/bin/grep"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/rm...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/rm...not found
Checking for program /usr/local/krb5/bin/rm...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/rm...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/rm...not found
Checking for program /opt/clmgr/sbin/rm...not found
Checking for program /opt/clmgr/bin/rm...not found
Checking for program /opt/sgi/sbin/rm...not found
Checking for program /opt/sgi/bin/rm...not found
Checking for program /usr/local/bin/rm...not found
Checking for program /usr/bin/rm...found
Defined make macro "RM" to "/usr/bin/rm -f"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/diff...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/diff...not found
Checking for program /usr/local/krb5/bin/diff...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/diff...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/diff...not found
Checking for program /opt/clmgr/sbin/diff...not found
Checking for program /opt/clmgr/bin/diff...not found
Checking for program /opt/sgi/sbin/diff...not found
Checking for program /opt/sgi/bin/diff...not found
Checking for program /usr/local/bin/diff...not found
Checking for program /usr/bin/diff...found
Running Executable WITHOUT threads to time it out
Executing: "/usr/bin/diff" -w "/p/work2/tmondrag/petsc-N5i8ny/config.programs/diff1" "/p/work2/tmondrag/petsc-N5i8ny/config.programs/diff2"
Defined make macro "DIFF" to "/usr/bin/diff -w"
Checking for program /usr/ucb/ps...not found
Checking for program /usr/usb/ps...not found
Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/ps...not found
Unable to find programs ['ps'] providing listing of each search directory to help debug
Path provided in Python program
Warning /usr/ucb is not a directory
Warning /usr/usb is not a directory
Path provided by --with-executables-search-path
['win32fe.exe', 'win32feutils.dll']
Defined make macro "PYTHON" to "/usr/bin/python"
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/m4...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/m4...not found
Checking for program /usr/local/krb5/bin/m4...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/m4...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/m4...not found
Checking for program /opt/clmgr/sbin/m4...not found
Checking for program /opt/clmgr/bin/m4...not found
Checking for program /opt/sgi/sbin/m4...not found
Checking for program /opt/sgi/bin/m4...not found
Checking for program /usr/local/bin/m4...not found
Checking for program /usr/bin/m4...found
Defined make macro "M4" to "/usr/bin/m4"
child config.programs 1.683024
================================================================================
TEST configureMake from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:87)
TESTING: configureMake from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:87)
Check Guesses for GNU make
Running Executable WITHOUT threads to time it out
Executing: gmake --version
stdout:
GNU Make 4.0
Built for x86_64-unknown-linux-gnu
Copyright (C) 1988-2013 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/gmake...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/gmake...not found
Checking for program /usr/local/krb5/bin/gmake...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/gmake...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/gmake...not found
Checking for program /opt/clmgr/sbin/gmake...not found
Checking for program /opt/clmgr/bin/gmake...not found
Checking for program /opt/sgi/sbin/gmake...not found
Checking for program /opt/sgi/bin/gmake...not found
Checking for program /usr/local/bin/gmake...not found
Checking for program /usr/bin/gmake...found
Defined make macro "MAKE" to "/usr/bin/gmake"
================================================================================
TEST setupGNUMake from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:121)
TESTING: setupGNUMake from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:121)
Setup other GNU make stuff
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code []
Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code []
Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code []
Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF}
Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory"
Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory"
Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse"
================================================================================
TEST configureMakeNP from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:168)
TESTING: configureMakeNP from config.packages.make(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:168)
check no of cores on the build machine [perhaps to do make '-j ncores']
module multiprocessing found 72 cores: using make_np = 42
Defined make macro "MAKE_NP" to "42"
Defined make macro "MAKE_TEST_NP" to "30"
Defined make macro "MAKE_LOAD" to "104.8"
Defined make macro "NPMAX" to "72"
child config.packages.make 0.020709
================================================================================
TEST alternateConfigureLibrary from config.packages.OpenMPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.OpenMPI 0.000827
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
================================================================================
TEST alternateConfigureLibrary from config.packages.MPICH(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.MPICH 0.004006
================================================================================
TEST checkDependencies from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:836)
TESTING: checkDependencies from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:836)
================================================================================
TEST configureLibrary from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:617)
TESTING: configureLibrary from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:617)
==================================================================================
Checking for a functional MPI
Checking for library in Compiler specific search MPI: []
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for functions [MPI_Init MPI_Comm_create] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_Init();
static void _check_MPI_Init() { MPI_Init(); }
char MPI_Comm_create();
static void _check_MPI_Comm_create() { MPI_Comm_create(); }
int main() {
_check_MPI_Init();
_check_MPI_Comm_create();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Checking for optional headers [] in Compiler specific search MPI: ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files [] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Found header files [] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['mpi.h'] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking include with compiler flags var CPPFLAGS ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Preprocess stderr before filtering::
Preprocess stderr after filtering::
Found header files ['mpi.h'] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkMPIDistro from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:478)
TESTING: checkMPIDistro from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:478)
Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h
Used for consistency checking of MPI installation at compile time
All intermediate test results are stored in /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:4:25: error: ���I_MPI_VERSION��� undeclared here (not in a function); did you mean ���MPI_VERSION���?
const char *mpich_ver = I_MPI_VERSION;
^~~~~~~~~~~~~
MPI_VERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
const char *mpich_ver = I_MPI_VERSION;
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:4:17: error: ���I_MPI_NUMVERSION��� undeclared here (not in a function); did you mean ���MPI_SUBVERSION���?
int mpich_ver = I_MPI_NUMVERSION;
^~~~~~~~~~~~~~~~
MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = I_MPI_NUMVERSION;
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:4:17: error: ���MVAPICH2_NUMVERSION��� undeclared here (not in a function); did you mean ���MPI_SUBVERSION���?
int mpich_ver = MVAPICH2_NUMVERSION;
^~~~~~~~~~~~~~~~~~~
MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = MVAPICH2_NUMVERSION;
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:4:17: error: ���MPICH_NUMVERSION��� undeclared here (not in a function); did you mean ���MPI_SUBVERSION���?
int mpich_ver = MPICH_NUMVERSION;
^~~~~~~~~~~~~~~~
MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = MPICH_NUMVERSION;
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:4:18: error: ���OMPI_MAJOR_VERSION��� undeclared here (not in a function); did you mean ���MPI_SUBVERSION���?
int ompi_major = OMPI_MAJOR_VERSION;
^~~~~~~~~~~~~~~~~~
MPI_SUBVERSION
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:5:18: error: ���OMPI_MINOR_VERSION��� undeclared here (not in a function); did you mean ���OMPI_MAJOR_VERSION���?
int ompi_minor = OMPI_MINOR_VERSION;
^~~~~~~~~~~~~~~~~~
OMPI_MAJOR_VERSION
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:20: error: ���OMPI_RELEASE_VERSION��� undeclared here (not in a function); did you mean ���OMPI_MINOR_VERSION���?
int ompi_release = OMPI_RELEASE_VERSION;
^~~~~~~~~~~~~~~~~~~~
OMPI_MINOR_VERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int ompi_major = OMPI_MAJOR_VERSION;
int ompi_minor = OMPI_MINOR_VERSION;
int ompi_release = OMPI_RELEASE_VERSION;
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler: exit code 1
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:9:2: error: #error not MSMPI
#error not MSMPI
^~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
#define xstr(s) str(s)
#define str(s) #s
#if defined(MSMPI_VER)
char msmpi_hex[] = xstr(MSMPI_VER);
#else
#error not MSMPI
#endif
int main() {
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
================================================================================
TEST configureMPI2 from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:253)
TESTING: configureMPI2 from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:253)
Check for functions added to the interface in MPI-2
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int flag;if (MPI_Finalized(&flag));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_FINALIZED" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_IN_PLACE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0;
if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_REDUCE_LOCAL" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_WIN_CREATE" to "1"
Defined "HAVE_MPI_ONE_SIDED" to "1"
================================================================================
TEST configureMPI3 from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:298)
TESTING: configureMPI3 from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:298)
Check for functions added to the interface in MPI-3
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win;
if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm));
if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win));
if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:7:24: warning: this ���if��� clause does not guard... [-Wmisleading-indentation]
if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:8:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ���if���
if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req));
^~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req;
if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req));
if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req));
if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req));
if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req));
if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req));
if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req));
if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Comm distcomm;
MPI_Request req;
if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm));
if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm));
if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:30: warning: ���win��� is used uninitialized in this function [-Wuninitialized]
int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_GET_ACCUMULATE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:47: warning: ���win��� is used uninitialized in this function [-Wuninitialized]
int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_RGET" to "1"
================================================================================
TEST configureMPIEXEC from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:175)
TESTING: configureMPIEXEC from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:175)
Checking for location of mpiexec
Defined make macro "MPIEXEC" to "Not_appropriate_for_batch_systems_You_must_use_your_batch_system_to_submit_MPI_jobs_speak_with_your_local_sys_admin"
================================================================================
TEST configureMPITypes from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:345)
TESTING: configureMPITypes from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:345)
Checking for MPI Datatype handles
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <mpi.h>
int main() {
int size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();
;
return 0;
}
===============================================================================
***** WARNING: Cannot determine if MPI_LONG_DOUBLE works on your system
in batch-mode! Assuming it does work. Run with --known-mpi-long-double=0
if you know it does not work (very unlikely). Run with --known-mpi-long-double=1
to remove this warning message *****
===============================================================================
Defined "HAVE_MPI_LONG_DOUBLE" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <mpi.h>
int main() {
int size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_size(MPI_INT64_T, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();
;
return 0;
}
===============================================================================
***** WARNING: Cannot determine if MPI_INT64_T works on your system
in batch-mode! Assuming it does work. Run with --known-mpi-int64_t=0
if you know it does not work (very unlikely). Run with --known-mpi-int64_t=1
to remove this warning message *****
===============================================================================
Defined "HAVE_MPI_INT64_T" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <mpi.h>
int main() {
int size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();
;
return 0;
}
===============================================================================
***** WARNING: Cannot determine if MPI_C_DOUBLE_COMPLEX works on your system
in batch-mode! Assuming it does work. Run with --known-mpi-c-double-complex=0
if you know it does not work (very unlikely). Run with --known-mpi-c-double-complex=1
to remove this warning message *****
===============================================================================
Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1"
================================================================================
TEST SGIMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:406)
TESTING: SGIMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:406)
Returns true if SGI MPI is used
Checking for functions [MPI_SGI_barrier] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_SGI_barrier();
static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); }
int main() {
_check_MPI_SGI_barrier();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
SGI MPI detected - defining MISSING_SIGTERM
Defined "MISSING_SIGTERM" to "1"
================================================================================
TEST CxxMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:416)
TESTING: CxxMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:416)
Make sure C++ can compile and link
Checking for header mpi.h
Checking for C++ MPI_Finalize()
Checking for functions [MPI_Finalize] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicxx -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.cc
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.cc: In function ���void _check_MPI_Finalize()���:
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.cc:5:41: warning: variable ���ierr��� set but not used [-Wunused-but-set-variable]
static void _check_MPI_Finalize() { int ierr;
^~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <mpi.h>
static void _check_MPI_Finalize() { int ierr;
ierr = MPI_Finalize();; }
int main() {
_check_MPI_Finalize();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicxx -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
================================================================================
TEST FortranMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:432)
TESTING: FortranMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:432)
Make sure fortran include [mpif.h] and library symbols are found
Checking for fortran mpi_init()
Checking for functions [] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.F90
Possible ERROR while running compiler:
stderr:
/p/home/apps/hpe/mpt-2.19/include/mpif.h:561:54:
integer MPI_STATUSES_IGNORE(MPI_STATUS_SIZE,1)
1
Warning: Unused variable ���mpi_statuses_ignore��� declared at (1) [-Wunused-variable]
Source:
program main
#include "mpif.h"
integer ierr
call mpi_init(ierr)
end
Running Executable WITHOUT threads to time it out
Executing: mpif90 -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Checking for mpi.mod
Checking for functions [] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpif90 -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.compilersFortran -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.F90
Possible ERROR while running compiler: exit code 1
stderr:
f951: Fatal Error: Reading module ���mpi��� at line 1 column 2: Unexpected EOF
compilation terminated.
Source:
program main
use mpi
integer ierr,rank
call mpi_init(ierr)
call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr)
end
Compile failed inside link
================================================================================
TEST configureIO from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:454)
TESTING: configureIO from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:454)
Check for the functions in MPI/IO
- Define HAVE_MPIIO if they are present
- Some older MPI 1 implementations are missing these
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:7:1: warning: this ���if��� clause does not guard... [-Wmisleading-indentation]
if (MPI_Type_get_extent(MPI_INT, &lb, &extent));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:9:50: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ���if���
MPI_File fh;
^~~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:12:1: warning: this ���if��� clause does not guard... [-Wmisleading-indentation]
if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:14:50: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ���if���
if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:18:1: warning: this ���if��� clause does not guard... [-Wmisleading-indentation]
if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:20:50: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ���if���
if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh));
^~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:12:5: warning: ���buf��� is used uninitialized in this function [-Wuninitialized]
if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:18:5: warning: ���disp��� is used uninitialized in this function [-Wuninitialized]
if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:18:5: warning: ���info��� is used uninitialized in this function [-Wuninitialized]
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Aint lb, extent;
if (MPI_Type_get_extent(MPI_INT, &lb, &extent));
MPI_File fh;
void *buf;
MPI_Status status;
if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status));
if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status));
MPI_Offset disp;
MPI_Info info;
if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info));
if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh));
if (MPI_File_close(&fh));
;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPIIO" to "1"
================================================================================
TEST findMPIInc from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:558)
TESTING: findMPIInc from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:558)
Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS
================================================================================
TEST PetscArchMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:592)
TESTING: PetscArchMPICheck from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:592)
Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_Type_get_envelope();
static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); }
char MPI_Type_dup();
static void _check_MPI_Type_dup() { MPI_Type_dup(); }
char MPI_Init_thread();
static void _check_MPI_Init_thread() { MPI_Init_thread(); }
char MPI_Iallreduce();
static void _check_MPI_Iallreduce() { MPI_Iallreduce(); }
char MPI_Ibarrier();
static void _check_MPI_Ibarrier() { MPI_Ibarrier(); }
char MPI_Finalized();
static void _check_MPI_Finalized() { MPI_Finalized(); }
char MPI_Exscan();
static void _check_MPI_Exscan() { MPI_Exscan(); }
char MPI_Reduce_scatter();
static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); }
char MPI_Reduce_scatter_block();
static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); }
int main() {
_check_MPI_Type_get_envelope();
_check_MPI_Type_dup();
_check_MPI_Init_thread();
_check_MPI_Iallreduce();
_check_MPI_Ibarrier();
_check_MPI_Finalized();
_check_MPI_Exscan();
_check_MPI_Reduce_scatter();
_check_MPI_Reduce_scatter_block();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1"
Defined "HAVE_MPI_TYPE_DUP" to "1"
Defined "HAVE_MPI_INIT_THREAD" to "1"
Defined "HAVE_MPI_IALLREDUCE" to "1"
Defined "HAVE_MPI_IBARRIER" to "1"
Defined "HAVE_MPI_FINALIZED" to "1"
Defined "HAVE_MPI_EXSCAN" to "1"
Defined "HAVE_MPI_REDUCE_SCATTER" to "1"
Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1"
Checking for functions [MPIX_Iallreduce] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPIX_Iallreduce();
static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); }
int main() {
_check_MPIX_Iallreduce();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o: in function `_check_MPIX_Iallreduce':
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce'
collect2: error: ld returned 1 exit status
Checking for functions [MPIX_Ibarrier] in library [] []
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPIX_Ibarrier();
static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); }
int main() {
_check_MPIX_Ibarrier();;
return 0;
}
Running Executable WITHOUT threads to time it out
Executing: mpicc -o /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o -lquadmath -lstdc++ -ldl
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.o: in function `_check_MPIX_Ibarrier':
/p/work2/tmondrag/petsc-N5i8ny/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier'
collect2: error: ld returned 1 exit status
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:5: warning: unused variable ���combiner��� [-Wunused-variable]
int combiner = MPI_COMBINER_DUP;;
^~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int combiner = MPI_COMBINER_DUP;;
return 0;
}
Defined "HAVE_MPI_COMBINER_DUP" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:5: warning: unused variable ���combiner��� [-Wunused-variable]
int combiner = MPI_COMBINER_CONTIGUOUS;;
^~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int combiner = MPI_COMBINER_CONTIGUOUS;;
return 0;
}
Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1"
Running Executable WITHOUT threads to time it out
Executing: mpicc -c -o /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.o -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.closure -I/p/work2/tmondrag/petsc-N5i8ny/config.compilers -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.cacheDetails -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.functions -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.featureTestMacros -I/p/work2/tmondrag/petsc-N5i8ny/config.utilities.missing -I/p/work2/tmondrag/petsc-N5i8ny/PETSc.options.scalarTypes -I/p/work2/tmondrag/petsc-N5i8ny/config.libraries -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
Possible ERROR while running compiler:
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c: In function ���main���:
/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c:6:5: warning: unused variable ���combiner��� [-Wunused-variable]
int combiner = MPI_COMBINER_NAMED;;
^~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int combiner = MPI_COMBINER_NAMED;;
return 0;
}
Defined "HAVE_MPI_COMBINER_NAMED" to "1"
================================================================================
TEST checkVersion from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:986)
TESTING: checkVersion from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:986)
Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include "mpi.h"
;petscpkgver(MPI_VERSION);
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI /p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI/conftest.c
For mpi need 2 <= 3 <=
================================================================================
TEST checkSharedLibrary from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:920)
TESTING: checkSharedLibrary from config.packages.MPI(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:920)
By default we don't care about checking if the library is shared
child config.packages.MPI 4.614358
================================================================================
TEST alternateConfigureLibrary from config.packages.zstd(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.zstd(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.zstd 0.001155
================================================================================
TEST alternateConfigureLibrary from config.packages.yaml(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.yaml(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.yaml 0.000965
================================================================================
TEST configureLibrary from config.packages.valgrind(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:861)
TESTING: configureLibrary from config.packages.valgrind(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:861)
Find an installation and check if it can work with PETSc
==================================================================================
Checking for a functional valgrind
Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
No functions to check for in library [] []
Checking for optional headers [] in Compiler specific search VALGRIND: ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files [] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Found header files [] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['valgrind/valgrind.h'] in ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking include with compiler flags var CPPFLAGS ['/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include <valgrind/valgrind.h> ^~~~~~~~~~~~~~~~~~~~~compilation terminated.:
Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
No functions to check for in library [] []
Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files [] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Found header files [] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/usr/local/include -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include <valgrind/valgrind.h> ^~~~~~~~~~~~~~~~~~~~~compilation terminated.:
Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for
================================================================================
TEST check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
No functions to check for in library [] []
Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files [] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Found header files [] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
================================================================================
TEST checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/p/home/apps/hpe/mpt-2.19/include', '/p/home/apps/gnu_compiler/7.2.0/include']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Running Executable WITHOUT threads to time it out
Executing: mpicc -E -I/p/work2/tmondrag/petsc-N5i8ny/config.setCompilers -I/p/work2/tmondrag/petsc-N5i8ny/config.types -I/p/work2/tmondrag/petsc-N5i8ny/config.packages.MPI -I/p/work2/tmondrag/petsc-N5i8ny/config.headers -I/usr/local/include -I/p/home/apps/hpe/mpt-2.19/include -I/p/home/apps/gnu_compiler/7.2.0/include /p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c"
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/confdefs.h" 1
# 2 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
# 1 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conffix.h" 1
# 3 "/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c" 2
stderr:
/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <valgrind/valgrind.h>
Preprocess stderr before filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory
#include <valgrind/valgrind.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
:
Preprocess stderr after filtering:/p/work2/tmondrag/petsc-N5i8ny/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include <valgrind/valgrind.h> ^~~~~~~~~~~~~~~~~~~~~compilation terminated.:
VALGRIND: SearchDir DirPath not found.. skipping: /opt/local
Running Executable WITHOUT threads to time it out
Executing: uname -s
stdout: Linux
===============================================================================
It appears you do not have valgrind installed on your system.
We HIGHLY recommend you install it from www.valgrind.org
Or install valgrind-devel or equivalent using your package manager.
Then rerun ./configure
===============================================================================
child config.packages.valgrind 0.069498
================================================================================
TEST alternateConfigureLibrary from config.packages.ssl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.ssl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.ssl 0.001138
================================================================================
TEST alternateConfigureLibrary from config.packages.sprng(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.sprng(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.sprng 0.000956
Not checking sowing on user request of --with-sowing=0
child config.packages.sowing 0.000852
================================================================================
TEST alternateConfigureLibrary from config.packages.revolve(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.revolve(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.revolve 0.000961
================================================================================
TEST alternateConfigureLibrary from config.packages.radau5(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.radau5(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.radau5 0.000963
================================================================================
TEST alternateConfigureLibrary from config.packages.pami(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.pami(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.pami 0.000771
================================================================================
TEST alternateConfigureLibrary from config.packages.opengles(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.opengles(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.opengles 0.000786
================================================================================
TEST alternateConfigureLibrary from config.packages.opencl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.opencl(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.opencl 0.000786
================================================================================
TEST alternateConfigureLibrary from config.packages.muparser(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.muparser(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.muparser 0.000952
Defined "PYTHON_EXE" to ""/usr/bin/python""
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/python -c "import Cython"
Running Executable WITHOUT threads to time it out
Executing: /usr/bin/python -c "import numpy"
child config.packages.python 0.090408
================================================================================
TEST alternateConfigureLibrary from config.packages.petsc4py(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/petsc4py.py:97)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/petsc4py.py:97)
Defined make rule "petsc4py-build" with dependencies "" and code []
Defined make rule "petsc4py-install" with dependencies "" and code []
child config.packages.petsc4py 0.002105
================================================================================
TEST alternateConfigureLibrary from config.packages.mpi4py(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/mpi4py.py:74)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/mpi4py.py:74)
Defined make rule "mpi4py-build" with dependencies "" and code []
Defined make rule "mpi4py-install" with dependencies "" and code []
child config.packages.mpi4py 0.001805
================================================================================
TEST alternateConfigureLibrary from config.packages.mpe(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.mpe(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.mpe 0.001006
================================================================================
TEST alternateConfigureLibrary from config.packages.memkind(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.memkind(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.memkind 0.000817
================================================================================
TEST alternateConfigureLibrary from config.packages.libmesh(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/libmesh.py:76)
TESTING: alternateConfigureLibrary from config.packages.libmesh(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/libmesh.py:76)
Defined make rule "libmesh-build" with dependencies "" and code []
Defined make rule "libmesh-install" with dependencies "" and code []
child config.packages.libmesh 0.001655
================================================================================
TEST alternateConfigureLibrary from config.packages.moose(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.moose(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.moose 0.000814
================================================================================
TEST alternateConfigureLibrary from config.packages.libjpeg(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.libjpeg 0.000966
================================================================================
TEST alternateConfigureLibrary from config.packages.libceed(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
TESTING: alternateConfigureLibrary from config.packages.libceed(/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/package.py:924)
Called if --with-packagename=0; does nothing by default
child config.packages.libceed 0.000926
Checking for program /app/unsupported/COST/git/2.4.4/gnu//bin/lgrind...not found
Checking for program /app/unsupported/COST/tcltk/8.6.4/gnu//bin/lgrind...not found
Checking for program /usr/local/krb5/bin/lgrind...not found
Checking for program /p/home/apps/hpe/mpt-2.19/bin/lgrind...not found
Checking for program /p/home/apps/gnu_compiler/7.2.0/bin/lgrind...not found
Checking for program /opt/clmgr/sbin/lgrind...not found
Checking for program /opt/clmgr/bin/lgrind...not found
Checking for program /opt/sgi/sbin/lgrind...not found
Checking for program /opt/sgi/bin/lgrind...not found
Checking for program /usr/local/bin/lgrind...not found
Checking for program /usr/bin/lgrind...not found
Checking for program /bin/lgrind...not found
Checking for program /usr/games/lgrind...not found
Checking for program /opt/c3/bin/lgrind...not found
Checking for program /opt/pbs/default/bin/lgrind...not found
Checking for program /sbin/lgrind...not found
Checking for program /bin/lgrind...not found
Checking for program /pbs/SLB/lgrind...not found
Checking for program /app/unsupported/local/bin/lgrind...not found
Checking for program /app/mpiutil/lgrind...not found
Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/lgrind...not found
Unable to find programs ['lgrind'] providing listing of each search directory to help debug
Path provided in Python program
Path provided by default path
['gitk', 'git-receive-pack', 'git-shell', 'git-cvsserver', 'git-upload-pack', 'git-upload-archive', 'git']
['wish', 'wish8.6', 'tclsh8.6', 'tclsh']
Warning /usr/local/krb5/bin is not a directory
['mpiexec', 'mpt_query', 'mpirun', 'mpt_checkpoint', 'mpt_shepherd', 'mpicc', 'mpicxx', 'mpif77', 'mpif90', 'mpt_forward', 'mpt_bt', 'mpif08', 'oshrun', 'mpiexec_mpt', 'oshfort', 'oshcc', 'util', 'mpt_restart', 'rail-config', 'mpt_hugepage_config', 'omplace', 'oshCC']
['c++', 'gccgo', 'go', 'x86_64-pc-linux-gnu-gcc-nm', 'x86_64-pc-linux-gnu-gfortran', 'x86_64-pc-linux-gnu-gccgo', 'x86_64-pc-linux-gnu-gcc', 'x86_64-pc-linux-gnu-gcc-ranlib', 'g++', 'gfortran', 'cpp', 'gcc', 'gcc-ar', 'x86_64-pc-linux-gnu-gcc-7.2.0', 'x86_64-pc-linux-gnu-gcc-ar', 'x86_64-pc-linux-gnu-c++', 'gcc-nm', 'x86_64-pc-linux-gnu-g++', 'gofmt', 'gcov-tool', 'gcc-ranlib', 'gcov', 'gcov-dump']
Warning /opt/clmgr/sbin is not a directory
['rpdcp', 'pdsh', 'pdcp', 'dshbak', 'cmu_stop_monitoring', 'cmu_start_monitoring', 'cmu_restart_monitoring', 'cmu_lock', 'cm', 'SmallMonitoringDaemon', 'SendUdpMessage', 'SecondaryServerMonitoringDaemon']
['tempohbc', 'cattr']
['cminfo']
[]
['python-argcomplete-check-easy-install-script', 'sh', 'luac', 'rdoc.ruby2.1', 'jstatd', 'nstat', 'isoinfo', 'rmic', 'mkroot', 'rmiregistry', 'mailq', 'rpmverify', 'rdoc', 'isodebug', 'getconf', 'serialver', 'devdump', 'sip', 'rake.ruby2.1', 'db_sql', 'wsgen', 'javac', 'rake', 'db_hotbackup', 'isovfy', 'netcat', 'ri', 'native2ascii', 'ri.ruby2.1', 'orbd', 'jps', 'routef', 'ss', 'gem2rpm-0.10.1', 'extcheck', 'jstat', 'wsimport', 'pkill', 'vim', 'db_dump', 'unpack200', 'funzip', 'policytool', 'vi', 'javap', 'db_deadlock', 'ps', 'xjc', 'javadoc', 'tcsh', 'awk', 'newaliases', 'routel', 'lnstat', 'gtk-update-icon-cache', 'ld', 'appletviewer', 'dbus-send', 'java', 'keytool', 'db_archive', 'pgrep', 'ftp', 'lua', 'db_printlog', 'gem2rpm', 'unzipsfx', 'dbus-launch', 'iptables-xml', 'db_load', 'easy_install', 'javah', 'tnameserv', 'jar', 'rpmquery', 'unzip', 'db_checkpoint', 'jmap', 'gem2rpm.ruby2.1', 'db_stat', 'zipgrep', 'jarsigner', 'modulecmd', 'schemagen', 'ctags', 'csh', 'jinfo', 'jconsole', 'db_verify', 'ksh', 'jstack', 'db_upgrade', 'rbash', 'db_recover', 'SUSEConnect', 'jrunscript', 'pack200', 'jsadebugd', 'install-info', 'servertool', 'add.modules', 'jhat', 'rmid', 'isodump', 'jdb', 'envsubst', 'kbdrate', 'smidiff', 'manpath', 'snmpset', 'systemctl', 'xml_spellcheck', 'xargs', 'gouldtoppm', 'spawn_console', 'gccmakedep', 'snmpnetstat', 'cnf', 'id', 'lwp-dump', 'pnmshear', 'Signature_conversion', 'lessecho', 'sg_map', 'apropos', 'pbmto10x', 'pgmmake', 'ib_write_bw', 'openssl', 'gcc-nm-4.8', 'Backarrow2BackSpace', 'openvt', 'roff2html', 'pnmstitch', 'pre-grohtml', 'grub2-syslinux2cfg', 'systemd-run', 'c_rehash', 'aclocal-1.13', 'x86info', 'pcxtoppm', 'scsi_satl', 'fuk', 'geqn', 'mk_changelog', 'pamarith', 'ibv_asyncwatch', 'jpico', 'gdb-add-index', 'pdf2dsc', 'cmake', 'libnetcfg', 'systemd-analyze', 'luit', 'date', 'emacsclient', 'bno_plot.py', 'nl', 'snmptest', 'ibdmsh', 'resizecons', 'llobdstat', 'quota', 'exportCRL.pl', 'zypper', 'gtester', 'mev', 'gmetric', 'lpstat', 'yacc', 'gvfs-set-attribute', 'grub2-kbdcomp', 'setfattr', 'ssh-add', 'mdeltree', 'nc', '411toppm', 'gprof', 'yum-repoquery3', 'rxe_cfg', 'ppmtoneo', 'eject', 'w3m', 'lpr', 'pnmtotiff', 'ppmshift', 'env', 'mkdirhier', 'bzgrep', 'sgm_dd', 'svgtopam', 'who', 'systemd-cat', 'db48_load', 'clean-binary-files', 'ppmquantall', 'ypwhich', 'yzpper', 'lzcmp', 'slptool', 'mkfontdir', 'sun-to-mime', 'gvfs-rename', 'pwd', 'rpmqpack', 'patchwork', 'cpan2dist', 'unshare', 'gtk-launch', 'pax', 'xmbind', 'ftview', 'pbmpscale', 'munge', 'gpart', 'join', 'zegrep', 'pnmhisteq', 'gdcmpgif', 'skill', 'mkhybrid', 'tkcon', 'pcre-config', 'run_perftest_loopback', 'hexdump', 'setcifsacl', 'asn1Coding', 'circo', 'write', 'lua5.2', 'xdg-desktop-icon', 'jpegtopnm', 'rmdir', 'uniq', 'ldapexop', 'opensc-explorer', 'slabtop', 'pamsplit', 'db48_checkpoint', 'zip', 'qttracereplay', 'factor', 'pamaddnoise', 'ptx', 'opiegen', 'grops', 'unix-lpr.sh', 'pnmnoraw', 'perl5.18.2', 'ftdump', 'chmod', 'chkstat', 'roff2text', 'timed-read', 'tee', 'c2ph', 'lsusb', 'col', 'ps2epsi', 'pgmbentley', 'qmlviewer', 'gvgen', 'gstack', 'nroff', 'ppmchange', 'setmetamode', 'pbmtomrf', 'edit', 'pamfixtrunc', 'uil', 'grub2-mkrelpath', 'xpath', 'pdfmom', 'ppmtolj', 'pamscale', 'pnmcat', 'tgz', 'bmptoppm', 'mv', 'spax', 'ncursesw5-config', 'sg_read', 'chgrp', 'qrttoppm', 'autoscan', 'gtk3-icon-browser', 'lsdev', 'mmount', 'webtidy', 'grep', 'pgmtofs', 'fitstopnm', 'oggdec', 'ustar', 'wdctl', 'pamtooctaveimg', 'glib-compile-resources', 'ftp-rfc', 'pfbtops', 'automake-1.13', 'makedumpfile', 'kbd', 'ftvalid', 'rawtoppm', 'findmnt', 'rezip_repo_rsyncable', 'btt', 'grub2-mklayout', 'cdda2wav', 'gconf-merge-tree', 'smidump', 'jstar', 'grolbp', 'ulockmgr_server', 'pygobject-codegen-2.0', 'create-jar-links', 'db48_dump', 'time', 'pdf2ps', 'sg_copy_results', 'convertdb1', 'rescan-scsi-bus.sh', 'grub2-mount', 'perlivp', 'addr2line', 'pnmdepth', 'gpgsm', 'showkey', 'gunzip', 'zcat', 'snmpbulkwalk', 'pamstack', 'isolinux-config', 'stdbuf', 'repo2solv.sh', 'migspeed', 'sg_rdac', 'makeg', 'watchgnupg', 'setterm', 'xmllint', 'gd2copypal', 'regshell', 'lrelease', 'mclasserase', 'procinfo', 'autoconf', 'pdbimgtopam', 'net', 'gpgsm-gencert.sh', 'pbmclean', 'expr', 'snmp-bridge-mib', 'pbmtopi3', 'grotty', 'pbmtobbnbg', 'affixcompress', 'yppasswd', 'gvfs-mount', 'newgidmap', 'gvmap', 'wc', 'whoami', 'ibnlparse', 'appdata2solv', 'ppmwheel', 'tput', 'snmpwalk', 'ftgrid', 'iasecc-tool', 'ppmdmkfont', 'pammixinterlace', 'showaudio', 'ppmtobmp', 'linguist', 'nproc', 'esd', 'psresize', 'mdel', 'generateCRL.pl', 'gslp', 'fold', 'journalctl', 'ppmtoyuvsplit', 'pamtotiff', 'msgfmt', 'sun-message.csh', 'lfs', 'libyui-terminal', 'tail', 'top', 'pamtofits', 'dumpkeys', 'ppmdim', 'profiles', 'pbmtoicon', 'mstvpd', 'namei', 'broadwayd', 'cleanlinks', 'ppmtoilbm', 'ipf-mod.pl', 'lftpget', 'cameratopam', 'pnmmontage', 'sg_sat_set_features', 'gapplication', 'gvcolor', 'ri.ruby.ruby2.1', 'create_package_descr', 'xdg-email', 'sg_emc_trespass', 'regtree', 'pbmtoln03', 'ibv_rc_pingpong', 'lppasswd', 'lftp_wrapper', 'podselect', 'chattr', 'captoinfo', 'unxz', 'getfilename', 'mutt', 'ccomps', 'nodeattr', 'vcut', 'drpmsync', 'pbmtomgr', 'autom4te', 'pbmtox10bm', 'mailstat', 'pbmtoibm23xx', 'mknod', 'lfs_migrate', 'gvfs-open', 'spawn_login', 'mimecheck', 'mountpoint', 'psfxtable', 'gtk-demo', 'ppmrough', 'infokey', 'smbget', 'ppmcolors', 'ifnames', 'pnmtopnm', 'ldapcompare', 'delv', 'pygtk-codegen-2.0', 'perl', 'objcopy', 'fragiso', 'pnmtile', 'pnmtopclxl', 'lzcat', 'unmunch', 'pbmtoatk', 'grub2-script-check', 'moc', 'umount', 'cifsdd', 'testsaslauthd', 'qpaeq', 'moc-qt5', 'roff2ps', 'ex', 'psed', 'pbmtopsg3', 'memhog', 'comm', 'grn', 'smbcacls', 'sg_read_block_limits', 'chvt', 'ftmulti', 'bzcmp', 'eventlogadm', 'setfacl', 'pamtompfont', 'xz', 'lzegrep', 'gemtopbm', 'sg_ident', 'gettext.sh', 'ibv_ud_pingpong', 'config_data', 'rdate', 'scdaemon', 'ipmi_sim', 'gcr-viewer', 'inf2cdtext.pl', 'vimdiff', 'testrb', 'systemd-path', 'pgmslice', 'rpmlocate', 'chroot', 'ps2pdf12', 'sun-message', 'lsblk', 'pgmminkowski', 'openipmish', 'gml2gv', 'ebrowse', 'post-grohtml', 'sg_senddiag', 'amuFormat.sh', 'applydeltaiso', 'gdbus-codegen', 'smbtree', 'jmacs', 'pinky', 'richtext', 'tty', 'fixscribeps', 'pgmhist', 'pgpring', 'pgpewrap', 'pamgradient', 'sccmap', 'installcheck', 'pamtohtmltbl', 'libtool', 'pf2afm', 'gc', 'lsattr', 'ypdomainname', 'colmux', 'mshowfat', 'libpng16-config', 'cal', 'pdfroff', 'lupdate', 'oggenc', 'rasttopnm', 'xdg-settings', 'eu-elfcmp', 'getcifsacl', 'neqn', 'psfgettable', 'pamenlarge', 'keytab-lilo', 'systemd-journalctl', 'sg_prevent', 'curl', 'analyze', 'gtk-update-icon-cache-2.0', 'abs2rel', 'scsi_mandat', 'bzcat', 'freetype-config', 'xorrecord', 'ppmtorgb3', 'pammosaicknit', 'smtpd.py', 'ibdmtr', 'syslinux2ansi', 'unzip-plain', 'pamseq', 'xdg-terminal', 'cryptdir', 'old', 'ranlib', 'sftp', 'smbpasswd', 'bashbug', 'pngtogd', 'samba-regedit', 'nisdomainname', 'mkzftree', 'ib_send_bw', 'gemtopnm', 'attr', 'sg_verify', 'yume', 'smixlate', 'fribidi', 'nfs4_setfacl', 'makealias', 'grub2-mkfont', 'paste', 'cat', 'mandb', 'pamfunc', 'smbspool', 'sg_scan', 'sginfo', 'ncurses6-config', 'sha256sum', 'pamtopam', 'dlook.pl', 'cdinfo', 'rpmgraph', 'eu-findtextrel', 'ppmpat', 'strace-graph', 'getkeycodes', 'smbtar', 'mdatopbm', 'sum', 'setpriv', 'eyuvtoppm', 'grolj4', 'gdbus', 'lzless', 'xsubpp', 'pampaintspill', 'pstops', 'gcc', 'cyrus_sasl_sample_client', 'hipstopgm', 'gvfs-copy', 'gencat', 'jpeg2ktopam', 's2p', 'fmt', 'dc', 'setleds', 'plot-llstat', 'tbl', 'getafm', 'pnmalias', 'basename', 'fc-validate', 'sg_read_attr', 'ppmtouil', 'lwp-download', 'sg_reassign', 'ls', 'ppmtopcx', 'pydoc', 'opensc-tool', 'dbilogstrip', 'gfortran', 'emacs', 'zdiff', 'bzless', 'zipinfo', 'sfdp', 'mime-info-to-mime', 'fiascotopnm', 'winicontopam', 'lispmtopgm', 'lsmem', 'ppmtopuzz', 'dot', 'lsmod', 'aulastlog', 'gropdf', 'nfs4_editfacl', 'grub2-editenv', 'localedef', 'unicode_start', 'xml_merge', 'create_update_source.sh', 'sg_stpg', 'diff3', 'mzip', 'yuvtoppm', 'ofl', 'funzip-plain', 'ogginfo', 'lsusb.py', 'gpg-connect-agent', 'ipg', 'ppmquant', 'cdda2mp3.new', 'python2.7-config', 'wall', 'pamsharpness', 'audiosend', 'smilint', 'ypchfn', 'Backarrow2Delete', 'macptopbm', 'turbostat', 'pamflip', 'sg_ses', 'dig', 'epsffit', 'gettext', 'systemd-inhibit', 'makedumpfile-R.pl', 'libpng12-config', 'comps2solv', 'mkdiskimage', 'pamditherbw', 'gem2rpm.ruby2.1-0.10.1', 'sync', 'eu-ar', 'installation_sources', 'preconv', 'pod2html', 'bunzip2', 'pl2pm', 'setJava', 'unbuffer', 'udevadm', 'sg_vpd', 'uuencode', 'ppmmix', 'gmake', 'find2perl', 'gtbl', 'pyvenv', 'scout', 'sudo', 'ptardiff', 'fusermount', 'ypmatch', 'glib-genmarshal', 'sleep', 'dbiprof', 'dbwrap_tool', 'gconftool-rebuild', 'termidx', 'fstopgm', 'hunspell', 'fixdlsrps', 'sg_read_buffer', 'lsinitrd', 'checkmedia', 'gvfs-tree', 'g++-4.8', 'pnmtoplainpnm', 'neato', 'zipgrep-plain', 'catchsegv', 'unexpand', 'pr', 'gtk-update-icon-cache-3.0', 'unlzma', 'lprsetup.sh', 'pkttyagent', 'readcd', 'eu-ld', 'lastb', 'ppmtoeyuv', 'fillup', 'cluster', 'mcat', 'gsbj', 'python-argcomplete-check-easy-install-script-2.7', 'rpmmd2solv', 'dot2gxl', 'grub2-mknetdir', 'pktopbm', 'pbmtosunicon', 'ldd', 'Mail', 'gvfs-save', 'nmbstatus', 'dot_builtins', 'f2py', 'blkrawverify', 'timedatectl', 'pbmtoxbm', 'egrep', 'ppmdcfont', 'osage', 'pamoil', 'mimegzip', 'systemd-cgls', 'modhash', 'sort', 'ppmtopgm', 'qt3to4', 'truncate', 'xkibitz', 'dirmngr', 'bioradtopgm', 'glib-gettextize', 'make_method', 'setarch', 'annotate', 'quotasync', 'python', 'dracut', 'pbmtopk', 'pstree', 'genDDNSkey', 'pamfile', 'ppmforge', 'gpg-zip', 'fgconsole', 'fipshmac', 'icedax', 'pamtopfm', 'dbiproxy', 'zcmp', 'mmove', 'pylupdate4', 'ybmtopbm', 'xmlpatternsvalidator', 'fixpspps', 'rgb3toppm', 'rngtest', 'wish8.6', 'nsenter', 'cupstestdsc', 'zsoelim', 'ftbench', '.fipscheck.hmac', 'webpng', 'collectl', 'bmptopnm', 'create_sha1sum', 'x86_64-suse-linux-gnu-pkg-config', 'erb', 'grep-changelog', 'ps2pdfwr', 'lprm', 'rpmdb', 'fixwwps', 'gdk-pixbuf-query-loaders-64', 'db48_verify', 'lz', 'lsscsi', 'pdksh', 'btrecord', 'grub2-glue-efi', 'zipdetails', 'smime_keys', 'qvfb', 'mren', 'build-jar-repository', 'pamstretch', 'tfmtodit', 'lwp-request', 'zipsplit', 'infotopam', 'xorriso', 'colrm', 'snmpdelta', 'otp-md4', 'sed', 'sha512sum', 'bzip2recover', 'xhost', 'perf', 'deltainfoxml2solv', 'bzip2', 'dislocate', 'mimencode', 'md5pass', 'gs', 'qtconfig', 'stty', 'ppmtoleaf', 'sg_unmap', 'pgmtolispm', 'gtk-builder-convert', 'gvfs-less', 'gcore', 'ppmflash', 'piconv', 'expand', 'ionice', 'du', 'createpatch', 'ibv_xsrq_pingpong', 'xdg-desktop-menu', 'pmap', 'fixqt4headers.pl', 'pamtoxvmini', 'pamgauss', 'cpack', 'wordforms', 'pnmrotate', 'gcc-4.8', 'ainfo', 'grub2-emu-lite', 'slogin', 'python3.4m', 'ibv_uc_pingpong', 'ptar', 'snice', 'auvirt', 'pbmtocmuwm', 'psselect', 'rake.ruby.ruby2.1', 'xzfgrep', 'gvfs-trash', 'chrp-addnote', 'gsettings-data-convert', 'lzmadec', 'irb.ruby2.1', 'shar', 'brushtopbm', 'nmblookup', 'm4', 'unzipsfx-plain', 'peekfd', 'sg_rtpg', 'pjtoppm', 'mail', 'db48_deadlock', 'applydeltarpm', 'reset', 'uuidgen', 'pgmmedian', 'snmpget', 'gvmap.sh', 'ibdmchk', 'nfs4_getfacl', 'pamexec', 'scsi_readcap', 'pnmindex', 'opieftpd', 'kbdinfo', 'get-versions', 'df', 'grub2-menulst2cfg', 'spctoppm', 'prctl', 'avstopam', 'pamdepth', 'qhelpgenerator', 'lookbib', 'zypp-CheckAccessDeleted', 'lsns', 'cdda2ogg', 'unicode_stop', 'display-buttons', 'xwdtopnm', 'glib-compile-schemas', 'gtk-query-settings', 'lzma', 'unlink', 'mtools', 'snmpusm', 'snmpcheck', 'gdiffmk', 'sg_rmsn', 'pgmkernel', 'a2p', 'at', 'xorrisofs', 'screen', 'luitx', 'ar', 'rsyncstats', 'xmkmf', 'pygtk-demo', 'dlook', 'dirsplit', 'bison', 'eps2eps', 'systemd-firstboot', 'flock', 'create_md5sums', 'gslj', 'lsof', 'od', 'pbmmask', 'psfaddtable', 'bzdiff', 'initviocons', 'pamedge', 'pgmcrater', 'patch-metamail', 'pulseaudio', 'sgitopnm', 'troff', 'lzdiff', 'trace', 'db48_sql', 'smbclient', 'ppmcie', 'gcov', 'xtotroff', 'mbadblocks', 'cpio', 'snmpdf', 'ipcrm', 'scp', 'test_xauth', 'cpumap', 'gvfs-mkdir', 'usbhid-dump', 'pkcs15-crypt', 'ppm3d', 'less', 'netkey-tool', 'rpms2solv', 'testparm', 'vttest', 'vlock', 'ppmddumpfont', 'sg_start', 'pamtouil', 'rcc', 'mdu', 'tagmedia', 'ps2ascii', 'dos2unix', 'pbmtopgm', 'pod2usage', 'groups', 'ib_read_bw', 'fixfmps', 'ngettext', 'pnmtosir', 'pkcs15-init', 'xdg-mime', 'gcc-ar-4.8', 'pamendian', 'xmlwf', 'gawk', 'metamail', 'sg_logs', 'ippfind', 'richtoatk', 'gio-querymodules-64', 'sg_get_config', 'ftgamma', 'pnmsmooth', 'eu-addr2line', 'screendump', 'ipmish', 'pnmpad', 'gd2togif', 'numactl', 'regdiff', 'pamrgbatopng', 'info', 'systemd-stdio-bridge', 'chkconfig', 'extcompose', 'tknewsbiff', 'find-jar', 'readom', 'sg_map26', 'display-coords', 'ldapdelete', 'audiocompose', 'filesize', 'gtk-query-immodules-3.0-64', 'man', 'pamtodjvurle', 'ibdiagui', 'make', 'lzmore', 'uudecode', 'prtstat', 'opiekey', 'scriptreplay', 'grub2-fstest', 'mksh', 'arpaname', 'sip-2.7', 'ppmcolormask', 'last', 'pamrubber', 'pwdx', 'printf', 'pamslice', 'sputoppm', 'base32', 'sg_timestamp', 'gethostip', 'ppmtoacad', 'wbinfo', 'makedeltarpm', 'pbmtoescp2', 'eu-ranlib', 'gtk-builder-tool', 'pbmtodjvurle', 'fastjar', 'isosize', 'os-prober', 'encode_keychange', 'aclocal', 'pbmtog3', 'crontab', 'linux64', 'true', 'tzselect', 'colcrt', 'pbmtocis', 'db48_printlog', 'erb.ruby2.1', 'ppmtogif', 'db48_upgrade', 'grub2-render-label', 'intstats', 'tgatoppm', 'scsi_ready', 'pampick', 'xml_pp', 'rmcp_ping', 'ppmdist', 'qdbuscpp2xml', 'star', 'python3.4', 'packages2eula.pl', 'ul', 'flex', 'cpanp-run-perl', 'roff2x', 'ppmnorm', 'diff', 'pbmlife', 'dvipdf', 'aulast', 'mcomp', 'mkzimage_cmdline', 'munch', 'aa-easyprof', 'sg_raw', 'ps2pdf', 'mtvtoppm', 'mdir', 'systemd-ask-password', 'gpg2', 'python3', 'tailf', 'pkaction', 'fips_standalone_hmac', 'sg_ses_microcode', 'rpcgen', 'pkexec', 'ypchsh', 'neotoppm', 'podchecker', 'fdp', 'mkhtmlindex', 'pi3topbm', 'libtoolize', 'dir', 'ps2pdf13', 'grub2-mkimage', 'socklist', 'mstregdump', 'patch', 'ppmntsc', 'vorbiscomment', 'elfedit', 'pamtoavs', 'c++', 'newuidmap', 'scsi_start', 'h2xs', 'fixtpps', 'mstmread', 'westcos-tool', 'atktopbm', 'snmpbulkget', 'view', 'pammasksharpen', 'minfo', 'sg_turs', 'passwd', 'ppmtoyuv', 'chacl', 'pc1toppm', 'kill', 'ntlm_auth', 'psmerge', 'repomdxml2solv', 'pnmscale', 'ssh-agent', 'ibv_devinfo', 'gxditview', 'unmunge', 'install', 'tabs', 'free', 'whereis', 'pinentry', 'shownonascii', 'isohybrid.pl', 'pbmtozinc', 'etags', 'seq', 'ucs2any', 'ibtopodiff', 'uuenpipe', 'guess_encoding', 'outpsfheader', 'unix2mac', 'column', 'ftstring', 'systool', 'mkisofs', 'x86_64', 'ppmbrighten', 'fixmacps', 'locale', 'opielogin', 'sg_sat_identify', 'shuf', 'pamtojpeg2k', 'rebuild-jar-repository', 'pi1toppm', 'gvfs-mime', 'vitmp', 'readlink', 'gtester-report', 'xmlpatterns', 'gpm-root', 'opiesu', 'pnmtopalm', 'setup-pulseaudio', 'grub2-mkrescue', 'lockfile', 'size', 'cut', 'dbus-launch.x11', 'spottopgm', 'disable-paste', 'mcookie', 'rpcclient', 'cistopbm', 'rletopnm', 'gcc-ar', 'mtoolstest', 'readmult', 'command-not-found', 'opiepasswd', 'pnmquantall', 'grepjar', 'xzdiff', 'rexec', 'json_xs', 'mktemp', 'btrfs-map-logical', 'xdg-open', 'sprof', 'yes', 'mergelib', 'snapper', 'ping6', 'nslookup', 'tic', 'bdftruncate', 'curl-config', 'xzcat', 'ldapsearch', 'ib_atomic_bw', 'tsort', 'infotocap', 'automake', 'setpalette', 'bc', 'dotty', 'trust', 'getunimap', 'xauth', 'mesg', 'zeisstopnm', 'gpgv', 'grap2graph', 'afmtodit', 'bcfree', 'printafm', 'joe', 'bzmore', 'chmorph', 'sg', 'machinectl', 'pbmminkowski', 'pbmtoepsi', 'xzgrep', 'xbmtopbm', 'mmroff', 'addftinfo', 'sg_write_long', 'toe', 'lftp', 'tclsh', 'sc-hsm-tool', 'gconftool-2', 'pamchannel', 'designer', 'gpg-agent', 'ftdiff', 'qmake-qt5', 'sunicontopnm', 'link', 'sg_write_same', 'net-snmp-cert', 'lneato', 'pgmtopgm', 'ssh', 'tred', 'pfmtopam', 'sgi_config_changed', 'touch', 'gpgv2', 'ppmtopi1', 'ssh-keygen', 'pamtosrf', 'smbcontrol', 'scsi_temperature', 'atrm', 'gdk-pixbuf-csource', 'systemd-detect-virt', 'mimezip', 'pod2man', 'safe-rm', 'mt', 'eu-unstrip', 'gsdj500', 'unshar', 'cardos-tool', 'timed-run', 'ppmtosixel', 'scsi_logging_level', 'gpasswd', 'snmptls', 'perldoc', 'cancel', 'xdg-icon-resource', 'sg_sat_read_gplog', 'nop', 'gvpack', 'hltest', 'sg_get_lba_status', 'sirtopnm', 'loginctl', 'pnmtojpeg', 'ppmmake', 'pnmconvol', 'showexternal', 'wish', 'mvxattr', 'pamtopdbimg', 'mkmanifest', 'gd2topng', 'pnminterp', 'icontopbm', 'ruby', 'snmptable', 'sg_reset_wp', 'sg_opcodes', 'rm', 'opieinfo', 'pnmtoxwd', 'pamsistoaglyph', 'vimtutor', 'safe-rmdir', 'readelf', 'eqn2graph', 'bcomps', 'uname26', 'gcov-4.8', 'fipscheck', 'numastat', 'sun-audio-file', 'twopi', 'pnmnlfilt', 'gvfs-move', 'piv-tool', 'loadkeys', 'extlinux', 'dconf', 'ppmfade', 'genisoimage', 'unpigz', 'ipptool', 'strings', 'thinkjettopbm', 'autoreconf', 'pgmtexture', 'array', 'rds-ping', 'sdrcomp', 'merge-pciids', 'hostnamectl', 'gvfs-rm', 'mkinfodir', 'dmesg', 'kbd_mode', 'openct-tool', 'autoupdate', 'giftopnm', 'giftogd2', 'vdir', 'relnotes', 'create_directory.yast', 'ximtoppm', 'gpgparsemail', 'updateinfoxml2solv', 'pnmtoddif', 'ppmtoascii', 'cksum', 'gdk-pixbuf-pixdata', 'ddbugtopbm', 'grodvi', 'jbigtopnm', 'ldappasswd', 'fadot', 'pnmcrop', 'pnmtorle', 'gv2gxl', 'raw_ethernet_bw', 'xpmtoppm', 'cifscreds', 'psbook', 'pnmgamma', 'ppmtoppm', 'eu-objdump', 'openipmicmd', 'batch', 'pamtowinicon', 'i386', 'acyclic', 'pamx', 'xzmore', 'pbmupc', 'fc-scan', 'mpartition', 'rpmspec', 'pngtogd2', 'pamstretch-gen', 'mmencode', 'xzless', 'fixproc', 'pamrecolor', 'cp', 'gzexe', 'dirname', 'ppmtoxpm', 'btreplay', 'loadunimap', 'rpmsign', 'sha224sum', 'sg_luns', 'get_kernel_version', 'lexgrog', 'easy_install-2.7', 'prove', 'lp', 'sudoedit', 'pod2latex', 'zforce', 'grub2-file', 'ib_atomic_lat', 'pnmtojbig', 'expiry', 'fc-cat', 'ppmtv', 'lex', 'wbmptopbm', 'systemd-tmpfiles', 'base64', 'mattrib', 'uudepipe', 'pamfix', 'qmlplugindump', 'pbmtomatrixorbital', 'gpgtar', 'pixeltool', 'mac2unix', 'koi8rxterm', 'xzdec', 'strace', 'ipmilan', 'sbigtopgm', 'openipmi_eventd', 'pgmtopbm', 'mailto-hebrew', 'raw_ethernet_lat', 'testrb.ruby2.1', 'fc-match', 'getent', 'gfortran-4.8', 'pbmtoppa', 'pbmtextps', 'mxtar', 'uncompress', 'passmass', 'pstruct', 'mstmtserver', 'pamtopnm', 'mgrtopbm', 'printenv', 'grub2-emu', 'pbmtonokia', 'qdbusxml2cpp', 'lesskey', 'mailto', 'enc2xs', 'zipnote', 'psidtopgm', 'setfont', 'ib_send_lat', 'systemd-tty-ask-password-agent', 'pgmoil', 'cmuwmtopbm', 'gen-s390-cd-kernel.pl', 'smt', 'lzfgrep', 'getfacl', 'sg_xcopy', 'pnmhistmap', 'build-classpath', 'uname', 'unflatten', 'h2ph', 'znew', 'xml_grep', 'coredumpctl', 'mimeit', 'bzegrep', 'list_audio_tracks', 'pbmtolj', 'splitmail', 'sqlite3', 'mapscrn', 'recode', 'sha384sum', 'lastlog', 'pnmremap', 'ppmtopj', 'systemd-escape', 'prlimit', 'pbmtogo', 'ppmdither', 'ps2ps2', 'newgrp', 'pamdice', 'pnmtops', 'chage', 'pbmtext', 'pnmcolormap', 'regpatch', 'dwp', 'rsh', 'shred', 'agentxtrap', 'zsh', 'remunge', 'eu-strip', 'gdlib-config', 'tr', 'pathchk', 'stat', 'pbmtomda', 'pbmtomacp', 'pnmtotiffcmyk', 'rpmdb2solv', 'build-classpath-directory', 'snmpvacm', 'gxl2gv', 'cups-config', 'sha1sum', 'traptoemail', 'sg_read_long', 'xterm', 'pydoc3.4', 'gstat', 'raw_ethernet_fs_rate', 'pgmdeshadow', 'lzmainfo', 'gpgsplit', 'ibis', 'pamthreshold', 'pbmpage', 'dircolors', 'ppmtoicr', 'roff2pdf', 'uptime', 'makedeltaiso', 'emacs-x11', 'gpgconf', 'arch', 'ping', 'pamdeinterlace', 'augparse', 'c++filt', 'mcd', 'leaftoppm', 'eu-nm', 'mstfwreset', 'verify_blkparse', 'snmpinform', 'resize', 'manweb', 'xzegrep', 'pnmmargin', 'ispellaff2myspell', 'cpuset', 'expect', 'gdtopng', 'mk_listings', 'strip', 'mkfontscale', 'bzfgrep', 'lconvert', 'line', 'smbprngenpdf', 'tkmib', 'imake', 'stty.pl', 'os_release', 'srftopam', 'systemd-nspawn', 'ppmtolss16', 'gvfs-cat', 'sg_requests', 'uic', 'ipmitool', 'groffer', 'smistrip', 'syslinux', 'gvimtutor', 'catman', 'snmptranslate', 'decryptdir', 'bdftogd', 'embedspu', 'git_version.tcl', 'db48_hotbackup', 'pampop9', 'more', 'llstat', 'gst-device-monitor-1.0', 'escp2topbm', 'gcc-ranlib', 'create_sha1sums', 'hpftodit', 'pstree.x11', 'ppmtoarbtxt', 'pphs', 'metasend', 'check-binary-files', 'gnuctags', 'mmd', 'xzcmp', 'mount', 'sldtoppm', 'chcon', 'atq', 'clrunimap', 'pinentry-curses', 'pnmtopng', 'sg_rep_zones', 'mcheck', 'xpstat', 'ipmicmd', 'gxl2dot', 'sg_zone', 'augtool', 'tac', 'vmstat', 'osirrox', 'sg_safte', 'pamperspective', 'tifftopnm', 'lpunlock', 'look', 'python2-config', 'uz', 'otp-md5', 'gendiff', 'python2.7', 'mstmwrite', 'uxterm', 'systemd-sysusers', 'flex++', 'ppmtopict', 'lzgrep', 'scsi_stop', 'ib_write_lat', 'dirmngr-client', 'sg_inq', 'setvtrgb', 'lpoptions', 'fc-pattern', 'palmtopnm', 'xdg-su', 'rvim', 'jvmjar', 'showpicture', 'openpgp-tool', 'gsettings', 'tartest', 'ppmdraw', 'ibdiagnet', 'pgmedge', 'pnmscalefixed', 'red', 'ppmshadow', 'rev', 'pamundice', 'ypcat', 'perlbug', 'ctest', 'zgrep', 'mgrep', 'numfmt', 'perlthanks', 'rjoe', 'blkiomon', 'wodim', 'pnmflip', 'ncurses5-config', 'pkcs15-tool', 'mcopy', 'migratepages', 'setkeycodes', 'rftp', 'script', 'gvfs-ls', 'grub2-mkpasswd-pbkdf2', 'users', 'kernel-install', 'ldapwhoami', 'systemd-hwdb', 'cc', 'ps2pdf14', 'pnmpsnr', 'net-snmp-create-v3-user', 'systemd-machine-id-setup', 'iconv', 'cdrecord', 'pamsharpmap', 'fallocate', 'tset', 'wordlist2hunspell', 'compress_susetags', 'snmpgetnext', 'ruby.ruby2.1', 'gzip', 'dvdrecord', 'pgmramp', 'ycpc', 'find', 'syslinux-mtools', 'gpg', 'pbmtowbmp', 'mlabel', 'pitchplay', 'sg_referrals', 'pbmmake', 'cpupower', 'csplit', 'chem', 'pnmtofiasco', 'yume-opkg', 'hunzip', 'gem.ruby2.1', 'rename', 'lpq', 'qhelpconverter', 'usb-devices', 'fc-cache', 'sg_reset', 'watch', 'pbmtoascii', 'ChangeSymlinks', 'su', 'hdifftopam', 'isohybrid', 'systemd-loginctl', 'kmod', 'python2', 'rcc-qt5', 'rds-stress', 'killall', 'gpgkey2ssh', 'stdlogctl', 'create_repo_for_patch.sh', 'sg_write_verify', 'pnmpaste', 'sdiff', 'pnmtofits', 'db48_recover', 'ilbmtoppm', 'eidenv', 'clear', 'ld.bfd', 'host', 'chrt', 'sharesec', 'diff-jars', 'pnmmercator', 'sg_modes', 'ppmlabel', 'pgmmorphconv', 'echo', 'pbmtoptx', 'lkbib', 'pbmtogem', 'uic-qt5', 'asn1Decoding', 'gem', 'gdb', 'mwm', 'hzip', 'sg_wr_mode', 'sg_sync', 'pgmtoppm', 'pnminvert', 'pamtilt', 'ppmrelief', 'ptty_try', 'nsupdate', 'which', 'ppmtojpeg', 'eu-strings', 'sg_write_buffer', 'rlogin-cwd', 'showconsolefont', 'xml_split', 'false', 'sg_test_rwbuf', 'db48_archive', 'ipcmk', 'pamsumm', 'ppmrainbow', 'winicontoppm', 'logname', 'pyuic4', 'cryptoflex-tool', 'ccmakedep', 'ldapmodrdn', 'ppmtomap', 'dump2slvl.pl', 'fc-list', 'eu-make-debug-archive', 'localectl', 'emacs-gtk', 'pamtotga', 'sgp_dd', 'mstconfig', 'qdoc3', 'kbxutil', 'pgmabel', 'linux32', 'cpanp', 'mouse-test', 'gvfs-monitor-file', 'setlogcons', 'mkdir', 'sg_compare_and_write', 'oldfind', 'eu-elflint', 'pyrcc4', 'pamvalidate', 'crash', 'ppmglobe', 'igawk', 'mergesolv', 'fc-query', 'chfn', 'mshortname', 'shasum', 'net-snmp-config', 'utmpdump', 'pamwipeout', 'w3mman', 'qmake', 'split', 'yuvsplittoppm', 'psfstriptable', 'dumpsolv', 'pic', 'ogg123', 'numademo', 'tclsh8.6', 'fixwfwps', 'pic2graph', 'yum-repoquery', 'corelist', 'showpartial', 'pbmreduce', 'nm', 'chmem', 'snmpstatus', 'pxelinux-options', 'ppmtoterm', 'mtype', 'cmp', 'modsign-verify', 'pamsummcol', 'systemconfigurator', 'xml2-config', 'm17n-db', 'ruby-find-versioned', 'includeres', 'smiquery', 'ptargrep', 'plymouth', 'sg_format', 'gvfs-monitor-dir', 'ed', 'pnmcut', 'timeout', 'lessclose.sh', 'gsnd', 'getdelays', 'rdoc.ruby.ruby2.1', 'ppmtospu', 'memdiskfind', 'pgmnorm', 'pyvenv-3.4', 'pamstereogram', 'idn', 'gst-discoverer-1.0', 'wget', 'ldapmodify', 'findsmb', 'unix2dos', 'realpath', 'taskset', 'tload', 'whatis', 'rview', 'update-mime-database', 'gtk-encode-symbolic-svg', 'pfbtopfa', 'ppmspread', 'setvesablank', 'pamtohdiff', 'sg_decode_sense', 'zypp-NameReqPrv', 'ibv_srq_pingpong', 'ldapurl', 'kibitz', 'ssh-keyscan', 'ssh-copy-id', 'oLschema2ldif', 'as', 'pkg-config', 'splain', 'xmlcatalog', 'scan_scsi.linux', 'autoheader', 'glib-mkenums', 'pbmtoplot', 'doxygen', 'fixpsditps', 'gst-play-1.0', 'getfattr', 'xdg-screensaver', 'indxbib', 'pigz', 'solterm', 'rcvAppleSingle', 'systemd-cgtop', 'mailx', 'multixterm', 'ib_read_lat', 'ipcs', 'ausyscall', 'pod2text', 'imgtoppm', 'ln', 'mstmcra', 'revpath', 'pnmnorm', 'g++', 'pambayer', 'rds-info', 'testsolv', 'runcon', 'fixwpps', 'eqn', 'lndir', 'termprobes', 'eu-stack', 'ppmtowinicon', 'lsipc', 'rcp', 'irb', 'luac5.2', 'lslogins', 'linux-boot-prober', 'ppmtopjxl', 'setsid', 'sha1pass', 'busctl', 'xsltproc', 'systemd-delta', 'pnmtosgi', 'roff2dvi', 'ccmake', 'dijkstra', 'qdbus', 'extractres', 'deallocvt', 'formail', 'hostid', 'cyrus_sasl_sample_server', 'asciitopgm', 'nohup', 'sndAppleSingle', 'bootctl', 'uic3', 'systemd-notify', 'ftlint', 'chsh', 'objdump', 'sg_rbuf', 'eu-size', 'pngtopam', 'grub2-mkstandalone', 'sg_sanitize', 'convmv', 'prune', 'dplace', 'ppmtomitsu', 'mkfifo', 'renice', 'rlogin', 'pnmarith', 'strace-log-merge', 'gsdj', 'pamcomp', 'makedepend', '[', 'lefty', 'rawtopgm', 'md5sum', 'fdupes', 'cpp', 'getopt', 'snmptrap', 'gcc-nm', 'python-config', 'pnmtorast', 'dbus-run-session', 'tack', 'lessopen.sh', 'snmpconf', 'zipcloak', 'anytopnm', 'ipmi_ui', 'mm2gv', 'lslocks', 'raw_ethernet_burst_lat', 'infocmp', 'soelim', 'pbmtolps', 'geteltorito', 'lksh', 'smicache', 'telnet', 'xxd', 'instmodsh', 'mformat', 'pnmcomp', 'eu-readelf', 'ppmtoapplevol', 'ppmhist', 'cdda2mp3', 'p11-kit', 'repo2solv', 'chown', 'kmp-install', 'sg_dd', 'ibdiagpath', 'cpan', 'fgrep', 'run_perftest_multi_devices', 'mstflint', 'gresource', 'sudoreplay', 'pnmenlarge', 'akill', 'nice', 'gobject-query', 'sg_persist', 'pnmsplit', 'smbcquotas', 'rsync', 'udisksctl', 'cdrskin', 'dd', 'sg_readcap', 'ldapadd', 'showchar', 'head', 'zfgrep', 'file', 'pbmto4425', 'asn1Parser', 'sun2mime', 'icu-config', 'rpmkeys', 'sg_sat_phy_event', 'db48_stat', 'rpm2cpio', 'groff', 'susetags2solv', 'pgmnoise', 'pbmtoybm', 'refer', 'pdbedit', 'test', 'syncqt.pl', 'psnup', 'pkcheck', 'qdbusviewer', 'gtk-query-immodules-2.0-64', 'pamtosvg', 'autoexpect', 'finger', 'logger', 'combinedeltarpm', 'lss16toppm', 'xvminitoppm', 'rlatopam', 'smbinfo', 'w', 'pamlookup', 'mdig', 'pbmtoepson', 'gcc-ranlib-4.8', 'pambackground', 'mrftopbm', 'bznew', 'lwp-mirror', 'json_pp', 'lscpu', 'omshell', 'procmail', 'esdcompat', 'ps2ps', 'mimebzip', 'sqlite3_analyzer', 'pkcs11-tool', 'pydoc3', 'cpp-4.8', 'ibv_devices', 'grog', 'pngtopnm', 'libpng-config', 'ncursesw6-config', 'gdparttopng', 'pgmenhance', 'gvpr', 'zless', 'mrd', 'pnmfile', 'gvfs-info', 'pamcut', 'zmore', 'mailserver', 'qlalr', 'pnmquant', 'pamtogif', 'dump2psl.pl']
['chown', 'setvesablank', 'mkdir', 'lksh', 'showconsolefont', 'echo', 'setvtrgb', 'setkeycodes', 'mount', 'pidof', 'zsh', 'false', 'loadunimap', 'clrunimap', 'rm', 'setfont', 'setlogcons', 'fgrep', 'kbd_mode', 'gzip', 'dd', 'find', 'logger', 'awk', 'ping6', 'cp', 'stat', 'psfstriptable', 'fgconsole', 'df', 'initviocons', 'systemd-ask-password', 'setpalette', 'uname', 'plymouth', 'unicode_stop', 'gawk', 'kill', 'readlink', 'touch', 'arch', 'ed', 'su', 'ls', 'unicode_start', 'sync', 'fillup', 'sort', 'sed', 'mail', 'psfaddtable', 'screendump', 'mktemp', 'loadkeys', 'ping', 'ln', 'mksh', 'guess_encoding', 'dmesg', 'more', 'deallocvt', 'kbdrate', 'systemctl', 'spawn_console', 'openvt', 'systemd', 'date', 'resizecons', 'pwd', 'rmdir', 'chmod', 'setmetamode', 'mv', 'chgrp', 'grep', 'findmnt', 'showkey', 'gunzip', 'zcat', 'dumpkeys', 'ksh', 'mknod', 'spawn_login', 'psfxtable', 'umount', 'chvt', 'lsblk', 'ypdomainname', 'psfgettable', 'ip', 'nisdomainname', 'cat', 'getkeycodes', 'setleds', 'basename', 'lsmod', 'ipg', 'sleep', 'egrep', 'stty', 'kbdinfo', 'cpio', 'true', 'outpsfheader', 'getunimap', 'mapscrn', 'md5sum', 'blkparse', 'dbus-cleanup-sockets', 'dbus-monitor', 'fsync', 'tar', 'ex', 'fuser', 'csh', 'rpm', 'pdksh', 'login', 'pgrep', 'btrace', 'dbus-send', 'netstat', 'tcsh', 'domainname', 'ps', 'dbus-uuidgen', 'hostname', 'vi', 'vim', 'pkill', 'dnsdomainname', 'bash', 'blktrace', 'usleep', 'dbus-daemon', 'keyctl', 'sh']
[]
['cshutdown', 'cpush', 'ckill', 'c3_sock.py', 'clist', 'cexecs', 'cpushimage', 'c3.csh', 'cname', 'cget', 'c3.sh', 'ckillnode', 'c3_except.py', 'crm', 'c3cmd-filter', 'c3_file_obj.py', 'cnum', 'c3_com_obj.py', 'c3_version.py', 'cexec', 'c3_config.py']
['pbs_rdel', 'pbs_migrate_users', 'qdisable', 'pbs_python', 'qselect', 'pbsdsh', 'pbs_remsh', 'qenable', 'nqs2pbs', 'pbsrun', 'pbs_mpilam', 'qstat', 'qmgr', 'tracejob', 'qrerun', 'pbs_tmrsh', 'qsig', 'pclm', 'qdel', 'pbs_lamboot', 'pbs_password', 'pbsrun_wrap', 'pbs_mpirun', 'pbs_mpihp', 'qalter', 'qmove', 'pbs_wish', 'pbs_sleep', 'qstop', 'qrun', 'qsub', 'qorder', 'pbs_rstat', 'printjob', 'qhold', 'qrls', 'mpiexec', 'qmsg', 'pbs_attach', 'pbs_release_nodes', 'pbsnodes', 'pbsrun_unwrap', 'printjob.bin', 'pbs_tclsh', 'qterm', 'pbs_rsub', 'qstart', 'pbs_ralter', 'pbs_topologyinfo', 'pbs_hostn']
['btrfs-debug-tree', 'mkdosfs', 'audispd', 'ifdown', 'fsck.ext3', 'mkfs.cramfs', 'raw', 'agetty', 'pivot_root', 'ifstatus', 'blkid', 'fsck.minix', 'hwclock', 'OneClickInstallUrlHandler', 'mke2fs', 'modprobe', 'fstrim', 'debugfs', 'hdparm', 'insserv', 'arping', 'reboot', 'crda', 'tracepath', 'btrfs', 'fsck.fat', 'badblocks', 'btrfsck', 'kdump', 'vconfig', 'e2undo', 'mkfs.minix', 'shutdown', 'regdbdump', 'adjtimex', 'auditctl', 'in.rdisc', 'fbtest', 'mkfs.msdos', 'dosfsck', 'swapon', 'telinit', 'mkfs.btrfs', 'mkfs.vfat', 'OneClickInstallUI', 'yast', 'fsck.ext2', 'dumpe2fs', 'smart_agetty', 'aureport', 'swaplabel', 'ctrlaltdel', 'btrfs-convert', 'OneClickInstallCLI', 'mkfs.ext3', 'chkconfig', 'btrfstune', 'rmmod', 'fsck.msdos', 'fdisk', 'SuSEfirewall2', 'logsave', 'mkfs.fat', 'e2image', 'rcipmi', 'mkfs.bfs', 'blockdev', 'switch_root', 'OCICLI', 'fsck', 'mkfs.ext4', 'sfdisk', 'insmod', 'fsck.cramfs', 'tracepath6', 'udevadm', 'lsmod', 'chcpu', 'btrfs-image', 'ip', 'refresh_initrd', 'ifprobe', 'depmod', 'fsck.vfat', 'modinfo', 'resize2fs', 'findfs', 'auditd', 'nologin', 'yast2', 'btrfs-show-super', 'kexec', 'poweroff', 'e2fsck', 'autrace', 'fsfreeze', 'fsck.ext4', 'halt', 'mkfs.ext2', 'rcSuSEfirewall2', 'service', 'wiper.sh', 'wipefs', 'dosfslabel', 'ifenslave', 'udevd', 'cryptsetup', 'fsck.btrfs', 'e2label', 'swapoff', 'augenrules', 'tune2fs', 'mkswap', 'ifup', 'cfdisk', 'runlevel', 'mount.fuse', 'losetup', 'rsyslogd', 'btrfs-zero-log', 'clockdiff', 'ausearch', 'mkfs', 'init', 'slattach', 'chkstat-polkit', 'getappcore', 'mdadm', 'ipmaddr', 'update-bootloader', 'install-info', 'fsck.xfs', 'purge-kernels', 'tunefs.reiserfs', 'vgremove', 'mount.cifs', 'fstab-decode', 'iscsi-iname', 'pmap_set2', 'lvscan', 'vgexport', 'vgreduce', 'rcnetwork', 'mount.crypt_LUKS', 'mkill', 'dmraid', 'iscsiuio', 'SUSEfirewall2', 'bootcpuset', 'vgcreate', 'lvmconf', 'umount.nfs4', 'multipathd', 'rcsubdomain', 'installkernel', 'route', 'dmeventd', 'pvremove', 'pvscan', 'lvmsar', 'unix2_chkpwd', 'multipath', 'vgcfgrestore', 'umount.crypt', 'pvchange', 'start_daemon', 'lvrename', 'mount.crypto_LUKS', 'lvmetad', 'unix_update', 'mount.nfs', 'ldconfig', 'mingetty', 'pbl', 'umount.nfs', 'setconsole', 'blkdeactivate', 'lvs', 'apparmor_parser', 'iscsi_discovery', 'mount.lustre', 'lvmdump', 'cpuset_release_agent', 'killproc', 'isserial', 'umount.crypto_LUKS', 'analyzevmcore', 'mkinitrd_setup', 'showconsole', 'lvmpolld', 'rvmtab', 'request-key', 'pam_tally2', 'plipconfig', 'dhclient-script', 'lvmconfig', 'vgchange', 'resize_reiserfs', 'ifuser', 'unix_chkpwd', 'umount.crypt_LUKS', 'mdmon', 'fsadm', 'rarp', 'lvdisplay', 'rcapparmor', 'ether-wake', 'lvreduce', 'lspci', 'vgimportclone', 'lvm', 'pvcreate', 'blogger', 'key.dns_resolver', 'vgdisplay', 'pvdisplay', 'dmevent_tool', 'pvs', 'nfsdcltrack', 'rpcbind', 'vgscan', 'blogd', 'iptunnel', 'setpci', 'brcm_iscsiuio', 'chkbin', 'supportconfig', 'lvremove', 'ifconfig', 'vgck', 'nameif', 'vgrename', 'mkfs.reiserfs', 'pvmove', 'lvmsadc', 'vgconvert', 'dhclient', 'lvchange', 'mount.crypt', 'lvconvert', 'vgextend', 'pvresize', 'mkinitrd', 'mkfs.xfs', 'pidofproc', 'startproc', 'vgsplit', 'update-pciids', 'iscsi_fw_login', 'dmsetup', 'pidof', 'reiserfsck', 'debugfs.reiserfs', 'vgmknodes', 'lvmdiskscan', 'sysctl', 'startpar', 'lvextend', 'netconfig', 'vgs', 'blogctl', 'debugreiserfs', 'rpcinfo', 'lvresize', 'vgcfgbackup', 'fsck.reiserfs', 'mkhomedir_helper', 'checkproc', 'set_polkit_default_privs', 'rmt', 'dmstats', 'vhangup', 'lvcreate', 'vgmerge', 'mount.nfs4', 'xfs_repair', 'mkreiserfs', 'vgimport', 'pvck', 'reiserfstune', 'pam_timestamp_check', 'osd_login', 'arp', 'killall5', 'rcsyslog', 'iscsid', 'kpartx', 'iscsi_offload', 'iscsistart', 'dhclient6', 'mpathpersist', 'iscsi-gen-initiatorname', 'iscsiadm']
['chown', 'setvesablank', 'mkdir', 'lksh', 'showconsolefont', 'echo', 'setvtrgb', 'setkeycodes', 'mount', 'pidof', 'zsh', 'false', 'loadunimap', 'clrunimap', 'rm', 'setfont', 'setlogcons', 'fgrep', 'kbd_mode', 'gzip', 'dd', 'find', 'logger', 'awk', 'ping6', 'cp', 'stat', 'psfstriptable', 'fgconsole', 'df', 'initviocons', 'systemd-ask-password', 'setpalette', 'uname', 'plymouth', 'unicode_stop', 'gawk', 'kill', 'readlink', 'touch', 'arch', 'ed', 'su', 'ls', 'unicode_start', 'sync', 'fillup', 'sort', 'sed', 'mail', 'psfaddtable', 'screendump', 'mktemp', 'loadkeys', 'ping', 'ln', 'mksh', 'guess_encoding', 'dmesg', 'more', 'deallocvt', 'kbdrate', 'systemctl', 'spawn_console', 'openvt', 'systemd', 'date', 'resizecons', 'pwd', 'rmdir', 'chmod', 'setmetamode', 'mv', 'chgrp', 'grep', 'findmnt', 'showkey', 'gunzip', 'zcat', 'dumpkeys', 'ksh', 'mknod', 'spawn_login', 'psfxtable', 'umount', 'chvt', 'lsblk', 'ypdomainname', 'psfgettable', 'ip', 'nisdomainname', 'cat', 'getkeycodes', 'setleds', 'basename', 'lsmod', 'ipg', 'sleep', 'egrep', 'stty', 'kbdinfo', 'cpio', 'true', 'outpsfheader', 'getunimap', 'mapscrn', 'md5sum', 'blkparse', 'dbus-cleanup-sockets', 'dbus-monitor', 'fsync', 'tar', 'ex', 'fuser', 'csh', 'rpm', 'pdksh', 'login', 'pgrep', 'btrace', 'dbus-send', 'netstat', 'tcsh', 'domainname', 'ps', 'dbus-uuidgen', 'hostname', 'vi', 'vim', 'pkill', 'dnsdomainname', 'bash', 'blktrace', 'usleep', 'dbus-daemon', 'keyctl', 'sh']
**** Configure header /p/work2/tmondrag/petsc-N5i8ny/confdefs.h ****
#if !defined(INCLUDED_UNKNOWN)
#define INCLUDED_UNKNOWN
#define IS_COLORING_MAX USHRT_MAX
#define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT
#define PETSC_CLANGUAGE_C 1
#define PETSC_HAVE_ERF 1
#define PETSC_HAVE_FENV_H 1
#define PETSC_HAVE_LOG2 1
#define PETSC_HAVE_TGAMMA 1
#define PETSC_CXX_INLINE inline
#define PETSC_CXX_RESTRICT __restrict
#define PETSC_C_INLINE inline
#define PETSC_C_RESTRICT __restrict
#define PETSC_FORTRAN_CHARLEN_T int
#define PETSC_HAVE_C99 1
#define PETSC_HAVE_CXX_DIALECT_CXX11 1
#define PETSC_HAVE_FORTRAN_UNDERSCORE 1
#define PETSC_HAVE_RTLD_GLOBAL 1
#define PETSC_HAVE_RTLD_LAZY 1
#define PETSC_HAVE_RTLD_LOCAL 1
#define PETSC_HAVE_RTLD_NOW 1
#define PETSC_HAVE_DLFCN_H 1
#define PETSC_HAVE_FCNTL_H 1
#define PETSC_HAVE_FLOAT_H 1
#define PETSC_HAVE_IMMINTRIN_H 1
#define PETSC_HAVE_INTTYPES_H 1
#define PETSC_HAVE_MALLOC_H 1
#define PETSC_HAVE_NETDB_H 1
#define PETSC_HAVE_NETINET_IN_H 1
#define PETSC_HAVE_PTHREAD_H 1
#define PETSC_HAVE_PWD_H 1
#define PETSC_HAVE_SETJMP_H 1
#define PETSC_HAVE_STDINT_H 1
#define PETSC_HAVE_STRINGS_H 1
#define PETSC_HAVE_SYS_PARAM_H 1
#define PETSC_HAVE_SYS_PROCFS_H 1
#define PETSC_HAVE_SYS_RESOURCE_H 1
#define PETSC_HAVE_SYS_SOCKET_H 1
#define PETSC_HAVE_SYS_SYSINFO_H 1
#define PETSC_HAVE_SYS_TIMES_H 1
#define PETSC_HAVE_SYS_TIME_H 1
#define PETSC_HAVE_SYS_TYPES_H 1
#define PETSC_HAVE_SYS_UTSNAME_H 1
#define PETSC_HAVE_SYS_WAIT_H 1
#define PETSC_HAVE_TIME_H 1
#define PETSC_HAVE_UNISTD_H 1
#define PETSC_HAVE_ISINF 1
#define PETSC_HAVE_ISNAN 1
#define PETSC_HAVE_ISNORMAL 1
#define PETSC_HAVE_REAL___FLOAT128 1
#define PETSC_USE_REAL_DOUBLE 1
#define PETSC_HAVE_C99_COMPLEX 1
#define PETSC_HAVE_CXX_COMPLEX 1
#define PETSC_HAVE_STRUCT_SIGACTION 1
#define PETSC_SIZEOF_ENUM 4
#define PETSC_SIZEOF_INT 4
#define PETSC_SIZEOF_LONG 8
#define PETSC_SIZEOF_LONG_LONG 8
#define PETSC_SIZEOF_SHORT 2
#define PETSC_SIZEOF_SIZE_T 8
#define PETSC_SIZEOF_VOID_P 8
#define PETSC_USE_FORTRANKIND 1
#define PETSC_USE_VISIBILITY_C 1
#define PETSC_USE_VISIBILITY_CXX 1
#define PETSC_HAVE_ACCESS 1
#define PETSC_HAVE_BZERO 1
#define PETSC_HAVE_CLOCK 1
#define PETSC_HAVE_DLCLOSE 1
#define PETSC_HAVE_DLERROR 1
#define PETSC_HAVE_DLOPEN 1
#define PETSC_HAVE_DLSYM 1
#define PETSC_HAVE_DRAND48 1
#define PETSC_HAVE_FORK 1
#define PETSC_HAVE_GETCWD 1
#define PETSC_HAVE_GETDOMAINNAME 1
#define PETSC_HAVE_GETHOSTBYNAME 1
#define PETSC_HAVE_GETHOSTNAME 1
#define PETSC_HAVE_GETPAGESIZE 1
#define PETSC_HAVE_GETRUSAGE 1
#define PETSC_HAVE_GETWD 1
#define PETSC_HAVE_LSEEK 1
#define PETSC_HAVE_MEMALIGN 1
#define PETSC_HAVE_MEMMOVE 1
#define PETSC_HAVE_MMAP 1
#define PETSC_HAVE_NANOSLEEP 1
#define PETSC_HAVE_POPEN 1
#define PETSC_HAVE_RAND 1
#define PETSC_HAVE_READLINK 1
#define PETSC_HAVE_REALPATH 1
#define PETSC_HAVE_SLEEP 1
#define PETSC_HAVE_SNPRINTF 1
#define PETSC_HAVE_SOCKET 1
#define PETSC_HAVE_STRCASECMP 1
#define PETSC_HAVE_SYSINFO 1
#define PETSC_HAVE_TIME 1
#define PETSC_HAVE_UNAME 1
#define PETSC_HAVE_USLEEP 1
#define PETSC_HAVE_VA_COPY 1
#define PETSC_HAVE_VSNPRINTF 1
#define PETSC_SIGNAL_CAST
#define PETSC_FORTRAN_TYPE_INITIALIZE = -2
#define PETSC_HAVE_FORTRAN_FLUSH 1
#define PETSC_HAVE_FORTRAN_TYPE_STAR 1
#define PETSC_USING_F2003 1
#define PETSC_USING_F90 1
#define PETSC_USING_F90FREEFORM 1
#define PETSC_HAVE_DYNAMIC_LIBRARIES 1
#define PETSC_USE_SHARED_LIBRARIES 1
#define PETSC_USE_DEBUGGER "gdb"
#define PETSC_VERSION_BRANCH_GIT "(HEAD detached from 5ea3abf)"
#define PETSC_VERSION_DATE_GIT "2020-01-24 13:29:59 -0600"
#define PETSC_VERSION_GIT "v3.12.3-632-gaf591a4"
#define PETSC_HAVE_MPIIO 1
#define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1
#define PETSC_HAVE_MPI_COMBINER_DUP 1
#define PETSC_HAVE_MPI_COMBINER_NAMED 1
#define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1
#define PETSC_HAVE_MPI_EXSCAN 1
#define PETSC_HAVE_MPI_FINALIZED 1
#define PETSC_HAVE_MPI_GET_ACCUMULATE 1
#define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1
#define PETSC_HAVE_MPI_IALLREDUCE 1
#define PETSC_HAVE_MPI_IBARRIER 1
#define PETSC_HAVE_MPI_INIT_THREAD 1
#define PETSC_HAVE_MPI_INT64_T 1
#define PETSC_HAVE_MPI_IN_PLACE 1
#define PETSC_HAVE_MPI_LONG_DOUBLE 1
#define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1
#define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1
#define PETSC_HAVE_MPI_ONE_SIDED 1
#define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1
#define PETSC_HAVE_MPI_REDUCE_LOCAL 1
#define PETSC_HAVE_MPI_REDUCE_SCATTER 1
#define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1
#define PETSC_HAVE_MPI_RGET 1
#define PETSC_HAVE_MPI_TYPE_DUP 1
#define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1
#define PETSC_HAVE_MPI_WIN_CREATE 1
#define PETSC_MISSING_SIGTERM 1
#define PETSC_Alignx(a,b)
#define PETSC_IS_COLOR_VALUE_TYPE short
#define PETSC_IS_COLOR_VALUE_TYPE_F integer2
#define PETSC_USE_AVX512_KERNELS 1
#define PETSC_USE_BACKWARD_LOOP 1
#define PETSC_USE_CTABLE 1
#define PETSC_USE_INFO 1
#define PETSC_USE_LOG 1
#define PETSC_USE_MALLOC_COALESCED 1
#define PETSC_MEMALIGN 16
#define PETSC_LEVEL1_DCACHE_LINESIZE 32
#define PETSC__BSD_SOURCE 1
#define PETSC__DEFAULT_SOURCE 1
#define PETSC__GNU_SOURCE 1
#define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1
#define PETSC_PYTHON_EXE "/usr/bin/python"
#endif
**** C specific Configure header /p/work2/tmondrag/petsc-N5i8ny/conffix.h ****
#if !defined(INCLUDED_UNKNOWN)
#define INCLUDED_UNKNOWN
#if defined(__cplusplus)
extern "C" {
}
#else
#endif
#endif
*******************************************************************************
OSError while running ./configure
-------------------------------------------------------------------------------
[Errno 13] Permission denied: '/pbs/SLB'
*******************************************************************************
File "/p/work2/tmondrag/moose/petsc/config/configure.py", line 447, in petsc_configure
framework.configure(out = sys.stdout)
File "/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1219, in configure
self.processChildren()
File "/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1208, in processChildren
self.serialEvaluation(self.childGraph)
File "/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1183, in serialEvaluation
child.configure()
File "/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/packages/lgrind.py", line 41, in configure
self.getExecutable('lgrind', getFullPath = 1)
File "/p/work2/tmondrag/moose/petsc/config/BuildSystem/config/base.py", line 307, in getExecutable
self.logWrite(' '+str(os.listdir(d))+'\n')
================================================================================
Finishing configure run at Fri, 24 Jan 2020 17:01:49 -0600
================================================================================
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