[petsc-users] error with xlib

[Mark Adams]

On Mon, Apr 13, 2020 at 12:48 PM Satish Balay <balay at mcs.anl.gov> wrote:

> This is very funky
>
> >>>
> Configure Options: --configModules=PETSc.Configure
> --optionsModule=config.compilerOptions
> --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2 COPTFLAGS="-O2 -g
> -Xpreprocessor -fopenmp -I"$(brew --prefix libomp)/include" -L"$(brew
> --prefix libomp)/lib -lomp"" CXXOPTFLAGS="-O2 -g -Xpreprocessor -fopenmp
> -I"$(brew --prefix libomp)/include" -L"$(brew --prefix libomp)/lib -lomp""
> FOPTFLAGS="-O2 -g -Xpreprocessor -fopenmp -I"$(brew --prefix
> libomp)/include" -L"$(brew --prefix libomp)/lib -lomp""
> --download-parmetis=1 --download-metis=1 --download-hypre=1
> --download-triangle=1 --download-p4est=1 --download-zlib --with-x=0
> --download-ctetgen --with-debugging=0 --download-hdf5=1
> PETSC_ARCH=arch-macosx-gnu-O-omp --with-openmp=1 --with-log=0
> --with-threadsafety --download-chaco
> <<<
>
> -I"$(brew --prefix libomp)/include" type options to configure doesn't make
> sense. You are using bash syntax here - and expecting configure to resolve
> it. Its best for your bash shell to evaluate this before passing this info
> to configure
>
> Also --download-zlib isn't needed on OSX
>

Hum, I get:

12:52 mark/feature-xgc-interface-rebase *= ~/Codes/petsc$
 ../arch-macosx-gnu-O-omp.py
===============================================================================
             Configuring PETSc to compile on your system

===============================================================================
TESTING: configureExternalPackagesDir from
config.framework(config/BuildSystem/config/framework.py:911)


 *******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
details):
-------------------------------------------------------------------------------
Package p4est requested but dependency zlib not requested. Perhaps you want
--download-zlib
*******************************************************************************



>
> Satish
>
>
> On Mon, 13 Apr 2020, Mark Adams wrote:
>
> > Now that I look at it, I see:
> >
> > CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -O2 -g
> > -Xpreprocessor -fopenmp -I"$(brew --prefix libomp)/include" -L"$(brew
> > --prefix libomp)/lib -lomp""
> > prefix="/Users/markadams/Codes/petsc/arch-macosx-gnu-O-omp"
> >
> > Note the two ". That does not look right. I use
> >
> > 'COPTFLAGS=-O2 -g  -Xpreprocessor -fopenmp -I"$(brew --prefix
> > libomp)/include" -L"$(brew --prefix libomp)/lib -lomp" ',
> >
> > I know how to do stuff like:
> >
> > '--with-blaslapack-lib=-L' + os.environ['OLCF_NETLIB_LAPACK_ROOT'] +
> > '/lib64 -lblas -llapack'
> >
> > Is there like and os.exec that I could use like this for my FLAGS?
> >
> >
> >
> > On Mon, Apr 13, 2020 at 11:46 AM Matthew Knepley <knepley at gmail.com>
> wrote:
> >
> > > On Mon, Apr 13, 2020 at 11:34 AM Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > >> I get this error configuring zlib, osx, with OpenMP.
> > >> Any ideas?
> > >>
> > >
> > > This failed without output
> > >
> > > Executing: cd
> > >
> /Users/markadams/Codes/petsc/arch-macosx-gnu-O-omp/externalpackages/zlib-1.2.11
> > > && CC="/usr/local/Cellar/mpich/3.3.2/bin/mpicc"
> CFLAGS="-fstack-protector
> > > -fno-stack-check -Qunused-arguments -O2 -g -Xpreprocessor -fopenmp
> > > -I"$(brew --prefix libomp)/include" -L"$(brew --prefix libomp)/lib
> -lomp""
> > > prefix="/Users/markadams/Codes/petsc/arch-macosx-gnu-O-omp"
> ./configure  &&
> > > /usr/bin/make -j7 -l12.0 &&  /usr/bin/make install
> > >
> > > So execute each step in turn and see what fails.
> > >
> > >   Thanks,
> > >
> > >      Matt
> > >
> > >
> > >> Thanks,
> > >> Mark
> > >>
> > >
> > >
> > > --
> > > What most experimenters take for granted before they begin their
> > > experiments is infinitely more interesting than any results to which
> their
> > > experiments lead.
> > > -- Norbert Wiener
> > >
> > > https://www.cse.buffalo.edu/~knepley/
> > > <http://www.cse.buffalo.edu/~knepley/>
> > >
> >
>
>
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