[petsc-users] (no subject)

Balay, Satish balay at mcs.anl.gov
Wed Feb 27 18:27:39 CST 2019


<removing petsc-dev>

Can you send configure.log from this build?

Satish

On Thu, 28 Feb 2019, DAFNAKIS PANAGIOTIS via petsc-users wrote:

> Hi everybody,
> 
> I am trying to install PETSc version 3.10.3 on OSX Sierra 10.13.6 with the
> following configure options
> ./configure --CC=mpicc --CXX=mpicxx --FC=mpif90 --PETSC_ARCH=sierra-dbg
> --with-debugging=1 --download-hypre=1 --with-x=0
> 
> however I am getting the following error messages when I do 'make check'. See
> below the resulting message. Any suggestions?
> 
> Thanks,
> 
> --Panos
> 
> panos at Sierra-iMac:~/Softwares/PETSc-Bitbucket/PETSc$ make
> PETSC_DIR=/Users/panos/Softwares/PETSc-Bitbucket/PETSc PETSC_ARCH=sierra-dbg
> check
> Running test examples to verify correct installation
> Using PETSC_DIR=/Users/panos/Softwares/PETSc-Bitbucket/PETSc and
> PETSC_ARCH=sierra-dbg
> make[2]: [ex19.PETSc] Error 2 (ignored)
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials ex19
> *********************************************************************************
> mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing
> -Wno-unknown-pragmas -Qunused-arguments -fvisibility=hidden -g3
> -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/include
> -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/include
> `pwd`/ex19.c
> mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress
> -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind
> -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
> -Qunused-arguments -fvisibility=hidden -g3  -o ex19 ex19.o
> -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -Wl,-rpath,/usr/local/Cellar/mpich/3.3/lib -L/usr/local/Cellar/mpich/3.3/lib
> -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0
> -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0
> -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8
> -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8
> -Wl,-rpath,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries
> -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries
> -Wl,-rpath,/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources
> -L/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources
> -Wl,-rpath,/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources
> -L/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -lpetsc
> -lHYPRE -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lGFXShared
> -lGLU -lGL -lGLImage -lCVMSPluginSupport -lFontParser -lFontRegistry -lJPEG
> -lTIFF -lPng -lGIF -lJP2 -lRadiance -lCoreVMClient -ldl
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.tbd and
> library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation.tbd
> and library file
> /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit.tbd and library
> file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator.tbd
> and library file
> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices.tbd
> and library file
> /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics.tbd
> and library file
> /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//Security.framework/Versions/A/Security.tbd and
> library file
> /System/Library/Frameworks//Security.framework/Versions/A/Security are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices.tbd
> and library file
> /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation.tbd and
> library file
> /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL.tbd and library
> file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface.tbd and
> library file
> /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText.tbd and
> library file
> /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO.tbd and
> library file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork.tbd and
> library file
> /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration.tbd
> and library file
> /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL.tbd and library
> file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio.tbd and
> library file
> /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox.tbd
> and library file
> /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory.tbd
> and library file
> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement.tbd
> and library file
> /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS.tbd and
> library file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS
> are out of sync. Falling back to library file for linking.
> Undefined symbols for architecture x86_64:
>   "_jpeg_CreateCompress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_destroy_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_finish_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_set_defaults", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_start_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_std_error", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_stdio_dest", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_write_scanlines", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_create_info_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_create_write_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_destroy_write_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_init_io", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_IHDR", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_PLTE", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_longjmp_fn", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_end", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_info", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_row", referenced from:
>       import-atom in libpetsc.dylib
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> make[3]: [ex19] Error 1 (ignored)
> /usr/bin/dsymutil ex19
> error: cannot parse the debug map for 'ex19': No such file or directory
> make[3]: *** [ex19] Error 1
> rm ex19.o
> 1,5c1,2
> < lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
> <   0 SNES Function norm 0.0406612
> <   1 SNES Function norm 4.12227e-06
> <   2 SNES Function norm 6.098e-11
> < Number of SNES iterations = 2
> ---
> > [proxy:0:0 at Sierra-iMac.local] HYDU_create_process
> > (utils/launch/launch.c:74): execvp error on file ./ex19 (No such file or
> > directory)
> > [proxy:0:0 at Sierra-iMac.local] HYDU_create_process
> > (utils/launch/launch.c:74): execvp error on file ./ex19 (No such file or
> > directory)
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials
> Possible problem with ex19_hypre, diffs above
> =========================================
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials ex5f
> *********************************************************
> mpif90 -c -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g
> -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/include
> -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/include   -o ex5f.o
> ex5f.F90
> mpif90 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress
> -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind   -Wall
> -ffree-line-length-0 -Wno-unused-dummy-argument -g   -o ex5f ex5f.o
> -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib
> -Wl,-rpath,/usr/local/Cellar/mpich/3.3/lib -L/usr/local/Cellar/mpich/3.3/lib
> -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0
> -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0
> -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8
> -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8
> -Wl,-rpath,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries
> -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries
> -Wl,-rpath,/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources
> -L/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources
> -Wl,-rpath,/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources
> -L/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -lpetsc
> -lHYPRE -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lGFXShared
> -lGLU -lGL -lGLImage -lCVMSPluginSupport -lFontParser -lFontRegistry -lJPEG
> -lTIFF -lPng -lGIF -lJP2 -lRadiance -lCoreVMClient -ldl
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.tbd and
> library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.tbd
> and library file
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.tbd
> and library file
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation.tbd
> and library file
> /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit.tbd and library
> file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator.tbd
> and library file
> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices.tbd
> and library file
> /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics.tbd
> and library file
> /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//Security.framework/Versions/A/Security.tbd and
> library file
> /System/Library/Frameworks//Security.framework/Versions/A/Security are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices.tbd
> and library file
> /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation.tbd and
> library file
> /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL.tbd and library
> file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface.tbd and
> library file
> /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText.tbd and
> library file
> /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO.tbd and
> library file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis.tbd
> and library file
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork.tbd and
> library file
> /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList.tbd
> and library file
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration.tbd
> and library file
> /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL.tbd and library
> file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL are out of
> sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio.tbd and
> library file
> /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio are out
> of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox.tbd
> and library file
> /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox are
> out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory.tbd
> and library file
> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement.tbd
> and library file
> /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement
> are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file
> /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS.tbd and
> library file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS
> are out of sync. Falling back to library file for linking.
> Undefined symbols for architecture x86_64:
>   "_jpeg_CreateCompress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_destroy_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_finish_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_set_defaults", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_start_compress", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_std_error", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_stdio_dest", referenced from:
>       import-atom in libpetsc.dylib
>   "_jpeg_write_scanlines", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_create_info_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_create_write_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_destroy_write_struct", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_init_io", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_IHDR", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_PLTE", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_set_longjmp_fn", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_end", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_info", referenced from:
>       import-atom in libpetsc.dylib
>   "_png_write_row", referenced from:
>       import-atom in libpetsc.dylib
> ld: symbol(s) not found for architecture x86_64
> collect2: error: ld returned 1 exit status
> make[3]: [ex5f] Error 1 (ignored)
> rm ex5f.o
> Completed test examples
> 



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