[petsc-users] Unable to compile super_dist using an intel compiler
Balay, Satish
balay at mcs.anl.gov
Tue Aug 27 15:54:16 CDT 2019
On Tue, 27 Aug 2019, Fande Kong via petsc-users wrote:
> Hi All,
>
> I was trying to compile PETSc with "--download-superlu_dist" using an intel
> compiler. I have explored with different options, but did not get PETSc
> built successfully so far. Any help would be appreciated.
>
> The log file is attached.
I attempted one and that worked.
Can you try the same on your machine and see if it still gives errors?
Satish
-----
-bash-4.2$ ./configure --with-cc=mpiicc --with-fc=mpiifort --with-cxx=mpiicpc --with-debugging=no -with-blas-lapack-dir=$MKLROOT --with-cxx-dialect=C++11 --download-superlu_dist=1 --download-metis --download-parmetis --download-cmake
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
=============================================================================== ***** WARNING: Using default optimization C flags -g -O3 You might consider manually setting optimal optimization flags for your system with COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default C++ optimization flags -g -O3 You might consider manually setting optimal optimization flags for your system with CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default FORTRAN optimization flags -g -O3 You might consider manually setting optimal optimization flags for your system with FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== =============================================================================== Trying to download https://cmake.org/files/v3.9/cmake-3.9.6.tar.gz for CMAKE =============================================================================== =============================================================================== Running configure on CMAKE; this may take several minutes =============================================================================== =============================================================================== Running make on CMAKE; this may take several minutes =============================================================================== =============================================================================== Running make install on CMAKE; this may take several minutes =============================================================================== =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS =============================================================================== =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== =============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS =============================================================================== =============================================================================== Configuring PARMETIS with cmake, this may take several minutes =============================================================================== =============================================================================== Compiling and installing PARMETIS; this may take several minutes =============================================================================== =============================================================================== Trying to download git://https://github.com/xiaoyeli/superlu_dist for SUPERLU_DIST =============================================================================== =============================================================================== Configuring SUPERLU_DIST with cmake, this may take several minutes =============================================================================== =============================================================================== Compiling and installing SUPERLU_DIST; this may take several minutes =============================================================================== Compilers:
C Compiler: mpiicc -fPIC -wd1572 -g -O3
C++ Compiler: mpiicpc -wd1572 -g -O3 -fPIC -std=c++11
Fortran Compiler: mpiifort -fPIC -g -O3
Linkers:
Shared linker: mpiicc -shared -fPIC -wd1572 -g -O3
Dynamic linker: mpiicc -shared -fPIC -wd1572 -g -O3
make:
BLAS/LAPACK: -Wl,-rpath,/home/intel/19u3/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/home/intel/19u3/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_def -lpthread
MPI:
cmake:
X:
Library: -lX11
pthread:
metis:
Includes: -I/home/balay/petsc/arch-linux2-c-opt/include
Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib -L/home/balay/petsc/arch-linux2-c-opt/lib -lmetis
parmetis:
Includes: -I/home/balay/petsc/arch-linux2-c-opt/include
Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib -L/home/balay/petsc/arch-linux2-c-opt/lib -lparmetis
SuperLU_DIST:
Includes: -I/home/balay/petsc/arch-linux2-c-opt/include
Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib -L/home/balay/petsc/arch-linux2-c-opt/lib -lsuperlu_dist
Arch:
mkl_sparse:
mkl_sparse_optimize:
sowing:
PETSc:
PETSC_ARCH: arch-linux2-c-opt
PETSC_DIR: /home/balay/petsc
Scalar type: real
Precision: double
Clanguage: C
Integer size: 32
shared libraries: enabled
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/home/balay/petsc PETSC_ARCH=arch-linux2-c-opt all
xxx=========================================================================xxx
-bash-4.2$ uname -a
Linux isdp001.cels.anl.gov 3.10.0-957.27.2.el7.x86_64 #1 SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
-bash-4.2$
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