[petsc-users] errors when using elemental with petsc3.10.5

[Balay, Satish]

Any reason for using  petsc-3.10.5 and not latest petsc-3.11?

I suggest starting from scatch and rebuilding.

And if you still have issues - send corresponding configure.log and make.log

Satish

On Thu, 22 Aug 2019, Lailai Zhu via petsc-users wrote:

> sorry, Satish,
> 
> but it does not seem to solve the problem.
> 
> best,
> lailai
> 
> On 8/22/19 12:41 AM, Balay, Satish wrote:
> > Can you run 'make' again and see if this error goes away?
> >
> > Satish
> >
> > On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote:
> >
> >> hi, Satish,
> >> i tried to do it following your suggestion, i get the following errors when
> >> installing.
> >> here is my configuration,
> >>
> >> any ideas?
> >>
> >> best,
> >> lailai
> >>
> >> ./config/configure.py --with-c++-support --known-mpi-shared-libraries=1
> >> --with-batch=0  --with-mpi=1 --with-debugging=0  CXXOPTFLAGS="-g -O3"
> >> COPTFLAGS="-O3 -ip -axCORE-AVX2 -xSSE4.2" FOPTFLAGS="-O3 -ip -axCORE-AVX2
> >> -xSSE4.2" --with-blas-lapack-dir=/opt/intel/mkl --download-elemental=1
> >> --download-blacs=1  --download-scalapack=1  --download-hypre=1
> >> --download-plapack=1 --with-cc=mpicc --with-cxx=mpic++ --with-fc=mpifort
> >> --download-amd=1 --download-anamod=1 --download-blopex=1
> >> --download-dscpack=1     --download-sprng=1 --download-superlu=1
> >> --with-cxx-dialect=C++11 --download-metis --download-parmetis
> >>
> >>
> >>
> >> pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: In function
> >> `MatCreate_SeqSBAIJ':
> >> sbaij.c:(.text+0x1bc45): undefined reference to
> >> `MatConvert_SeqSBAIJ_Elemental'
> >> ld: pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: relocation
> >> R_X86_64_PC32 against undefined hidden symbol
> >> `MatConvert_SeqSBAIJ_Elemental'
> >> can not be used when making a shared object
> >> ld: final link failed: Bad value
> >> gmakefile:86: recipe for target
> >> 'pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5' failed
> >> make[2]: *** [pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5] Error 1
> >> make[2]: Leaving directory
> >> '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3'
> >> ........................../petsc3.10.5_intel19_mpich3.3/lib/petsc/conf/rules:81:
> >> recipe for target 'gnumake' failed
> >> make[1]: *** [gnumake] Error 2
> >> make[1]: Leaving directory
> >> '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3'
> >> **************************ERROR*************************************
> >>   Error during compile, check
> >> pet3.10.5-intel19-mpich3.3/lib/petsc/conf/make.log
> >>   Send it and pet3.10.5-intel19-mpich3.3/lib/petsc/conf/configure.log to
> >> petsc-maint at mcs.anl.gov
> >>
> >> On 8/21/19 10:58 PM, Balay, Satish wrote:
> >>> To install elemental - you use: --download-elemental=1 [not
> >>> --download-elemental-commit=v0.87.7]
> >>>
> >>> Satish
> >>>
> >>>
> >>> On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote:
> >>>
> >>>> hi, dear petsc developers,
> >>>>
> >>>> I am having a problem when using the external solver elemental.
> >>>> I installed petsc3.10.5 version with the flag
> >>>> --download-elemental-commit=v0.87.7
> >>>> the installation seems to be ok. However, it seems that i may not be able
> >>>> to use the elemental solver though.
> >>>>
> >>>> I followed this page
> >>>> https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MATELEMENTAL.html
> >>>> to interface the elemental solver, namely,
> >>>> MatSetType(A,MATELEMENTAL);
> >>>> or set it via the command line '*-mat_type elemental*',
> >>>>
> >>>> in either case, i will get the following error,
> >>>>
> >>>> [0]PETSC ERROR: --------------------- Error Message
> >>>> --------------------------------------------------------------
> >>>> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package:
> >>>> http://www.mcs.anl.gov/petsc/documentation/installation.html#external
> >>>> [0]PETSC ERROR: Unknown Mat type given: elemental
> >>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >>>> for
> >>>> trouble shooting.
> >>>> [0]PETSC ERROR: Petsc Release Version 3.10.5, Mar, 28, 2019
> >>>>
> >>>> May i ask whether there will be a way or some specific petsc versions
> >>>> that
> >>>> are
> >>>> able to use the elemental solver?
> >>>>
> >>>> Thanks in advance,
> >>>>
> >>>> best,
> >>>> lailai
> >>>>
> >>
> 
>