[petsc-users] errors when using elemental with petsc3.10.5

[Balay, Satish]

Can you run 'make' again and see if this error goes away?

Satish

On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote:

> hi, Satish,
> i tried to do it following your suggestion, i get the following errors when
> installing.
> here is my configuration,
> 
> any ideas?
> 
> best,
> lailai
> 
> ./config/configure.py --with-c++-support --known-mpi-shared-libraries=1 
> --with-batch=0  --with-mpi=1 --with-debugging=0  CXXOPTFLAGS="-g -O3" 
> COPTFLAGS="-O3 -ip -axCORE-AVX2 -xSSE4.2" FOPTFLAGS="-O3 -ip -axCORE-AVX2
> -xSSE4.2" --with-blas-lapack-dir=/opt/intel/mkl --download-elemental=1
> --download-blacs=1  --download-scalapack=1  --download-hypre=1
> --download-plapack=1 --with-cc=mpicc --with-cxx=mpic++ --with-fc=mpifort 
> --download-amd=1 --download-anamod=1 --download-blopex=1
> --download-dscpack=1     --download-sprng=1 --download-superlu=1
> --with-cxx-dialect=C++11 --download-metis --download-parmetis
> 
> 
> 
> pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: In function
> `MatCreate_SeqSBAIJ':
> sbaij.c:(.text+0x1bc45): undefined reference to
> `MatConvert_SeqSBAIJ_Elemental'
> ld: pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: relocation
> R_X86_64_PC32 against undefined hidden symbol `MatConvert_SeqSBAIJ_Elemental'
> can not be used when making a shared object
> ld: final link failed: Bad value
> gmakefile:86: recipe for target
> 'pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5' failed
> make[2]: *** [pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5] Error 1
> make[2]: Leaving directory '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3'
> ........................../petsc3.10.5_intel19_mpich3.3/lib/petsc/conf/rules:81:
> recipe for target 'gnumake' failed
> make[1]: *** [gnumake] Error 2
> make[1]: Leaving directory '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3'
> **************************ERROR*************************************
>   Error during compile, check
> pet3.10.5-intel19-mpich3.3/lib/petsc/conf/make.log
>   Send it and pet3.10.5-intel19-mpich3.3/lib/petsc/conf/configure.log to
> petsc-maint at mcs.anl.gov
> 
> On 8/21/19 10:58 PM, Balay, Satish wrote:
> > To install elemental - you use: --download-elemental=1 [not
> > --download-elemental-commit=v0.87.7]
> >
> > Satish
> >
> >
> > On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote:
> >
> >> hi, dear petsc developers,
> >>
> >> I am having a problem when using the external solver elemental.
> >> I installed petsc3.10.5 version with the flag
> >> --download-elemental-commit=v0.87.7
> >> the installation seems to be ok. However, it seems that i may not be able
> >> to use the elemental solver though.
> >>
> >> I followed this page
> >> https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MATELEMENTAL.html
> >> to interface the elemental solver, namely,
> >> MatSetType(A,MATELEMENTAL);
> >> or set it via the command line '*-mat_type elemental*',
> >>
> >> in either case, i will get the following error,
> >>
> >> [0]PETSC ERROR: --------------------- Error Message
> >> --------------------------------------------------------------
> >> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package:
> >> http://www.mcs.anl.gov/petsc/documentation/installation.html#external
> >> [0]PETSC ERROR: Unknown Mat type given: elemental
> >> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> >> trouble shooting.
> >> [0]PETSC ERROR: Petsc Release Version 3.10.5, Mar, 28, 2019
> >>
> >> May i ask whether there will be a way or some specific petsc versions that
> >> are
> >> able to use the elemental solver?
> >>
> >> Thanks in advance,
> >>
> >> best,
> >> lailai
> >>
> 
>