[petsc-users] Fwd: DMPlex global to natural problem using DmPlexGetVertexNumbering or DMPlexGlobalToNatural
Danyang Su
danyang.su at gmail.com
Thu Nov 29 18:39:23 CST 2018
Dear PETSc developers & users,
Sorry to bother you again. I just encounter some difficulties in DMPlex
global to natural order. This is not the very necessary function in my
code. But it's best to have it in case someone wants to feed code with
initial conditions or parameters from external file using natural ordering.
First I tried to use DmPlexGetVertexNumbering which seems pretty
straightforward, but I always get error saying "You need a ISO C
conforming compiler to use the glibc headers". I use Gfortran on Linux.
Then I switched to use Label to save global-natural order before
distributing the mesh, everything works fine. The only problem is that
it takes a very long time during mesh distribution when the size of mesh
is very big.
Finally I tried to use GlobalToNatural ordering. Set Natural order to
TRUE before calling DMPlexDistribute and then call DMPlexSetMigrationSF.
However, the function DMPlexGlobalToNaturalEnd seems doing nothing as
the returned vector is always unchanged. I got some help from Josh who
has done similar work before. But I still cannot figure out what is
wrong in the code.
Attached is the code section with related functions included, together
with a mesh and output of global vector and natural vector. If something
is wrong in the code, it should be in these four functions. The related
functions are called in the following order.
call solver_dd_create_dmplex
call solver_dd_mapping_set_dmplex
call solver_dd_DMDACreate_flow
!call solver_dd_DMDACreate_react Not used in current testing
call solver_dd_mapping_global_natural
I really appreciate your help.
Regards,
Danyang
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Build local unstructured mesh, please wait ...
Build unstructured mesh, done.
vector view - petsc order
Vec Object: 4 MPI processes
type: mpi
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check migration SF
PetscSF Object: 4 MPI processes
type: basic
sort=rank-order
[0] Number of roots=617, leaves=208, remote ranks=1
[0] 0 <- (0,0)
[0] 1 <- (0,4)
[0] 2 <- (0,12)
[0] 3 <- (0,14)
[0] 4 <- (0,18)
[0] 5 <- (0,21)
[0] 6 <- (0,31)
[0] 7 <- (0,33)
[0] 8 <- (0,34)
[0] 9 <- (0,37)
[0] 10 <- (0,39)
[0] 11 <- (0,41)
[0] 12 <- (0,61)
[0] 13 <- (0,74)
[0] 14 <- (0,81)
[0] 15 <- (0,83)
[0] 16 <- (0,85)
[0] 17 <- (0,86)
[0] 18 <- (0,87)
[0] 19 <- (0,93)
[0] 20 <- (0,94)
[0] 21 <- (0,95)
[0] 22 <- (0,96)
[0] 23 <- (0,98)
[0] 24 <- (0,100)
[0] 25 <- (0,103)
[0] 26 <- (0,108)
[0] 27 <- (0,111)
[0] 28 <- (0,113)
[0] 29 <- (0,118)
[0] 30 <- (0,151)
[0] 31 <- (0,152)
[0] 32 <- (0,154)
[0] 33 <- (0,160)
[0] 34 <- (0,161)
[0] 35 <- (0,166)
[0] 36 <- (0,176)
[0] 37 <- (0,178)
[0] 38 <- (0,204)
[0] 39 <- (0,207)
[0] 40 <- (0,213)
[0] 41 <- (0,216)
[0] 42 <- (0,220)
[0] 43 <- (0,223)
[0] 44 <- (0,224)
[0] 45 <- (0,225)
[0] 46 <- (0,227)
[0] 47 <- (0,231)
[0] 48 <- (0,233)
[0] 49 <- (0,240)
[0] 50 <- (0,241)
[0] 51 <- (0,250)
[0] 52 <- (0,267)
[0] 53 <- (0,269)
[0] 54 <- (0,273)
[0] 55 <- (0,275)
[0] 56 <- (0,280)
[0] 57 <- (0,281)
[0] 58 <- (0,291)
[0] 59 <- (0,296)
[0] 60 <- (0,298)
[0] 61 <- (0,303)
[0] 62 <- (0,308)
[0] 63 <- (0,313)
[0] 64 <- (0,318)
[0] 65 <- (0,323)
[0] 66 <- (0,324)
[0] 67 <- (0,338)
[0] 68 <- (0,339)
[0] 69 <- (0,345)
[0] 70 <- (0,346)
[0] 71 <- (0,347)
[0] 72 <- (0,350)
[0] 73 <- (0,351)
[0] 74 <- (0,353)
[0] 75 <- (0,354)
[0] 76 <- (0,355)
[0] 77 <- (0,356)
[0] 78 <- (0,360)
[0] 79 <- (0,362)
[0] 80 <- (0,364)
[0] 81 <- (0,365)
[0] 82 <- (0,366)
[0] 83 <- (0,368)
[0] 84 <- (0,369)
[0] 85 <- (0,370)
[0] 86 <- (0,373)
[0] 87 <- (0,375)
[0] 88 <- (0,377)
[0] 89 <- (0,378)
[0] 90 <- (0,379)
[0] 91 <- (0,380)
[0] 92 <- (0,381)
[0] 93 <- (0,384)
[0] 94 <- (0,385)
[0] 95 <- (0,386)
[0] 96 <- (0,387)
[0] 97 <- (0,388)
[0] 98 <- (0,390)
[0] 99 <- (0,391)
[0] 100 <- (0,11)
[0] 101 <- (0,27)
[0] 102 <- (0,48)
[0] 103 <- (0,56)
[0] 104 <- (0,70)
[0] 105 <- (0,104)
[0] 106 <- (0,124)
[0] 107 <- (0,125)
[0] 108 <- (0,128)
[0] 109 <- (0,130)
[0] 110 <- (0,260)
[0] 111 <- (0,278)
[0] 112 <- (0,292)
[0] 113 <- (0,315)
[0] 114 <- (0,316)
[0] 115 <- (0,321)
[0] 116 <- (0,340)
[0] 117 <- (0,341)
[0] 118 <- (0,17)
[0] 119 <- (0,22)
[0] 120 <- (0,50)
[0] 121 <- (0,66)
[0] 122 <- (0,69)
[0] 123 <- (0,150)
[0] 124 <- (0,157)
[0] 125 <- (0,169)
[0] 126 <- (0,257)
[0] 127 <- (0,270)
[0] 128 <- (0,322)
[0] 129 <- (0,397)
[0] 130 <- (0,405)
[0] 131 <- (0,420)
[0] 132 <- (0,421)
[0] 133 <- (0,422)
[0] 134 <- (0,423)
[0] 135 <- (0,437)
[0] 136 <- (0,438)
[0] 137 <- (0,439)
[0] 138 <- (0,440)
[0] 139 <- (0,441)
[0] 140 <- (0,442)
[0] 141 <- (0,460)
[0] 142 <- (0,461)
[0] 143 <- (0,469)
[0] 144 <- (0,471)
[0] 145 <- (0,477)
[0] 146 <- (0,485)
[0] 147 <- (0,487)
[0] 148 <- (0,492)
[0] 149 <- (0,493)
[0] 150 <- (0,494)
[0] 151 <- (0,498)
[0] 152 <- (0,506)
[0] 153 <- (0,514)
[0] 154 <- (0,522)
[0] 155 <- (0,525)
[0] 156 <- (0,532)
[0] 157 <- (0,533)
[0] 158 <- (0,538)
[0] 159 <- (0,542)
[0] 160 <- (0,545)
[0] 161 <- (0,551)
[0] 162 <- (0,564)
[0] 163 <- (0,571)
[0] 164 <- (0,573)
[0] 165 <- (0,584)
[0] 166 <- (0,585)
[0] 167 <- (0,591)
[0] 168 <- (0,593)
[0] 169 <- (0,594)
[0] 170 <- (0,600)
[0] 171 <- (0,603)
[0] 172 <- (0,605)
[0] 173 <- (0,606)
[0] 174 <- (0,607)
[0] 175 <- (0,613)
[0] 176 <- (0,616)
[0] 177 <- (0,398)
[0] 178 <- (0,399)
[0] 179 <- (0,400)
[0] 180 <- (0,401)
[0] 181 <- (0,404)
[0] 182 <- (0,424)
[0] 183 <- (0,425)
[0] 184 <- (0,455)
[0] 185 <- (0,456)
[0] 186 <- (0,457)
[0] 187 <- (0,501)
[0] 188 <- (0,512)
[0] 189 <- (0,520)
[0] 190 <- (0,544)
[0] 191 <- (0,549)
[0] 192 <- (0,576)
[0] 193 <- (0,596)
[0] 194 <- (0,612)
[0] 195 <- (0,435)
[0] 196 <- (0,436)
[0] 197 <- (0,459)
[0] 198 <- (0,470)
[0] 199 <- (0,473)
[0] 200 <- (0,495)
[0] 201 <- (0,521)
[0] 202 <- (0,531)
[0] 203 <- (0,536)
[0] 204 <- (0,539)
[0] 205 <- (0,550)
[0] 206 <- (0,566)
[0] 207 <- (0,604)
[1] Number of roots=0, leaves=217, remote ranks=1
[1] 0 <- (0,1)
[1] 1 <- (0,5)
[1] 2 <- (0,6)
[1] 3 <- (0,11)
[1] 4 <- (0,19)
[1] 5 <- (0,20)
[1] 6 <- (0,25)
[1] 7 <- (0,26)
[1] 8 <- (0,27)
[1] 9 <- (0,28)
[1] 10 <- (0,29)
[1] 11 <- (0,32)
[1] 12 <- (0,40)
[1] 13 <- (0,42)
[1] 14 <- (0,43)
[1] 15 <- (0,44)
[1] 16 <- (0,47)
[1] 17 <- (0,48)
[1] 18 <- (0,56)
[1] 19 <- (0,57)
[1] 20 <- (0,59)
[1] 21 <- (0,60)
[1] 22 <- (0,62)
[1] 23 <- (0,63)
[1] 24 <- (0,70)
[1] 25 <- (0,71)
[1] 26 <- (0,75)
[1] 27 <- (0,76)
[1] 28 <- (0,78)
[1] 29 <- (0,88)
[1] 30 <- (0,90)
[1] 31 <- (0,104)
[1] 32 <- (0,121)
[1] 33 <- (0,124)
[1] 34 <- (0,125)
[1] 35 <- (0,128)
[1] 36 <- (0,129)
[1] 37 <- (0,130)
[1] 38 <- (0,132)
[1] 39 <- (0,133)
[1] 40 <- (0,136)
[1] 41 <- (0,142)
[1] 42 <- (0,145)
[1] 43 <- (0,147)
[1] 44 <- (0,163)
[1] 45 <- (0,165)
[1] 46 <- (0,180)
[1] 47 <- (0,181)
[1] 48 <- (0,186)
[1] 49 <- (0,187)
[1] 50 <- (0,190)
[1] 51 <- (0,198)
[1] 52 <- (0,208)
[1] 53 <- (0,210)
[1] 54 <- (0,211)
[1] 55 <- (0,212)
[1] 56 <- (0,218)
[1] 57 <- (0,228)
[1] 58 <- (0,243)
[1] 59 <- (0,244)
[1] 60 <- (0,245)
[1] 61 <- (0,248)
[1] 62 <- (0,249)
[1] 63 <- (0,253)
[1] 64 <- (0,256)
[1] 65 <- (0,258)
[1] 66 <- (0,260)
[1] 67 <- (0,261)
[1] 68 <- (0,274)
[1] 69 <- (0,278)
[1] 70 <- (0,282)
[1] 71 <- (0,283)
[1] 72 <- (0,284)
[1] 73 <- (0,285)
[1] 74 <- (0,287)
[1] 75 <- (0,292)
[1] 76 <- (0,295)
[1] 77 <- (0,299)
[1] 78 <- (0,309)
[1] 79 <- (0,315)
[1] 80 <- (0,316)
[1] 81 <- (0,321)
[1] 82 <- (0,327)
[1] 83 <- (0,331)
[1] 84 <- (0,332)
[1] 85 <- (0,335)
[1] 86 <- (0,336)
[1] 87 <- (0,337)
[1] 88 <- (0,340)
[1] 89 <- (0,341)
[1] 90 <- (0,342)
[1] 91 <- (0,343)
[1] 92 <- (0,344)
[1] 93 <- (0,359)
[1] 94 <- (0,361)
[1] 95 <- (0,382)
[1] 96 <- (0,392)
[1] 97 <- (0,93)
[1] 98 <- (0,154)
[1] 99 <- (0,178)
[1] 100 <- (0,204)
[1] 101 <- (0,281)
[1] 102 <- (0,291)
[1] 103 <- (0,296)
[1] 104 <- (0,298)
[1] 105 <- (0,303)
[1] 106 <- (0,308)
[1] 107 <- (0,318)
[1] 108 <- (0,339)
[1] 109 <- (0,350)
[1] 110 <- (0,351)
[1] 111 <- (0,353)
[1] 112 <- (0,355)
[1] 113 <- (0,370)
[1] 114 <- (0,379)
[1] 115 <- (0,380)
[1] 116 <- (0,388)
[1] 117 <- (0,49)
[1] 118 <- (0,50)
[1] 119 <- (0,169)
[1] 120 <- (0,246)
[1] 121 <- (0,247)
[1] 122 <- (0,9)
[1] 123 <- (0,30)
[1] 124 <- (0,135)
[1] 125 <- (0,148)
[1] 126 <- (0,184)
[1] 127 <- (0,189)
[1] 128 <- (0,229)
[1] 129 <- (0,277)
[1] 130 <- (0,320)
[1] 131 <- (0,352)
[1] 132 <- (0,393)
[1] 133 <- (0,394)
[1] 134 <- (0,398)
[1] 135 <- (0,399)
[1] 136 <- (0,400)
[1] 137 <- (0,401)
[1] 138 <- (0,403)
[1] 139 <- (0,404)
[1] 140 <- (0,406)
[1] 141 <- (0,407)
[1] 142 <- (0,408)
[1] 143 <- (0,409)
[1] 144 <- (0,410)
[1] 145 <- (0,411)
[1] 146 <- (0,424)
[1] 147 <- (0,425)
[1] 148 <- (0,426)
[1] 149 <- (0,427)
[1] 150 <- (0,428)
[1] 151 <- (0,455)
[1] 152 <- (0,456)
[1] 153 <- (0,457)
[1] 154 <- (0,464)
[1] 155 <- (0,466)
[1] 156 <- (0,475)
[1] 157 <- (0,484)
[1] 158 <- (0,490)
[1] 159 <- (0,496)
[1] 160 <- (0,497)
[1] 161 <- (0,501)
[1] 162 <- (0,509)
[1] 163 <- (0,510)
[1] 164 <- (0,512)
[1] 165 <- (0,515)
[1] 166 <- (0,520)
[1] 167 <- (0,534)
[1] 168 <- (0,537)
[1] 169 <- (0,544)
[1] 170 <- (0,548)
[1] 171 <- (0,549)
[1] 172 <- (0,555)
[1] 173 <- (0,556)
[1] 174 <- (0,560)
[1] 175 <- (0,562)
[1] 176 <- (0,567)
[1] 177 <- (0,570)
[1] 178 <- (0,576)
[1] 179 <- (0,577)
[1] 180 <- (0,579)
[1] 181 <- (0,586)
[1] 182 <- (0,587)
[1] 183 <- (0,588)
[1] 184 <- (0,590)
[1] 185 <- (0,596)
[1] 186 <- (0,609)
[1] 187 <- (0,612)
[1] 188 <- (0,615)
[1] 189 <- (0,405)
[1] 190 <- (0,423)
[1] 191 <- (0,471)
[1] 192 <- (0,477)
[1] 193 <- (0,522)
[1] 194 <- (0,533)
[1] 195 <- (0,600)
[1] 196 <- (0,603)
[1] 197 <- (0,613)
[1] 198 <- (0,616)
[1] 199 <- (0,470)
[1] 200 <- (0,479)
[1] 201 <- (0,521)
[1] 202 <- (0,531)
[1] 203 <- (0,604)
[1] 204 <- (0,412)
[1] 205 <- (0,413)
[1] 206 <- (0,452)
[1] 207 <- (0,453)
[1] 208 <- (0,478)
[1] 209 <- (0,488)
[1] 210 <- (0,502)
[1] 211 <- (0,517)
[1] 212 <- (0,565)
[1] 213 <- (0,568)
[1] 214 <- (0,574)
[1] 215 <- (0,598)
[1] 216 <- (0,608)
[2] Number of roots=0, leaves=215, remote ranks=1
[2] 0 <- (0,17)
[2] 1 <- (0,22)
[2] 2 <- (0,35)
[2] 3 <- (0,38)
[2] 4 <- (0,49)
[2] 5 <- (0,50)
[2] 6 <- (0,52)
[2] 7 <- (0,54)
[2] 8 <- (0,55)
[2] 9 <- (0,58)
[2] 10 <- (0,64)
[2] 11 <- (0,66)
[2] 12 <- (0,69)
[2] 13 <- (0,80)
[2] 14 <- (0,82)
[2] 15 <- (0,89)
[2] 16 <- (0,92)
[2] 17 <- (0,97)
[2] 18 <- (0,99)
[2] 19 <- (0,105)
[2] 20 <- (0,106)
[2] 21 <- (0,107)
[2] 22 <- (0,109)
[2] 23 <- (0,110)
[2] 24 <- (0,117)
[2] 25 <- (0,119)
[2] 26 <- (0,126)
[2] 27 <- (0,131)
[2] 28 <- (0,139)
[2] 29 <- (0,140)
[2] 30 <- (0,146)
[2] 31 <- (0,149)
[2] 32 <- (0,150)
[2] 33 <- (0,153)
[2] 34 <- (0,155)
[2] 35 <- (0,156)
[2] 36 <- (0,157)
[2] 37 <- (0,162)
[2] 38 <- (0,169)
[2] 39 <- (0,171)
[2] 40 <- (0,177)
[2] 41 <- (0,182)
[2] 42 <- (0,188)
[2] 43 <- (0,193)
[2] 44 <- (0,194)
[2] 45 <- (0,195)
[2] 46 <- (0,196)
[2] 47 <- (0,197)
[2] 48 <- (0,199)
[2] 49 <- (0,200)
[2] 50 <- (0,201)
[2] 51 <- (0,202)
[2] 52 <- (0,205)
[2] 53 <- (0,206)
[2] 54 <- (0,214)
[2] 55 <- (0,215)
[2] 56 <- (0,217)
[2] 57 <- (0,219)
[2] 58 <- (0,230)
[2] 59 <- (0,232)
[2] 60 <- (0,234)
[2] 61 <- (0,237)
[2] 62 <- (0,238)
[2] 63 <- (0,239)
[2] 64 <- (0,242)
[2] 65 <- (0,246)
[2] 66 <- (0,247)
[2] 67 <- (0,255)
[2] 68 <- (0,257)
[2] 69 <- (0,262)
[2] 70 <- (0,263)
[2] 71 <- (0,264)
[2] 72 <- (0,270)
[2] 73 <- (0,279)
[2] 74 <- (0,286)
[2] 75 <- (0,288)
[2] 76 <- (0,289)
[2] 77 <- (0,290)
[2] 78 <- (0,300)
[2] 79 <- (0,304)
[2] 80 <- (0,305)
[2] 81 <- (0,306)
[2] 82 <- (0,307)
[2] 83 <- (0,310)
[2] 84 <- (0,311)
[2] 85 <- (0,312)
[2] 86 <- (0,314)
[2] 87 <- (0,319)
[2] 88 <- (0,322)
[2] 89 <- (0,328)
[2] 90 <- (0,348)
[2] 91 <- (0,349)
[2] 92 <- (0,358)
[2] 93 <- (0,363)
[2] 94 <- (0,367)
[2] 95 <- (0,371)
[2] 96 <- (0,374)
[2] 97 <- (0,376)
[2] 98 <- (0,74)
[2] 99 <- (0,86)
[2] 100 <- (0,95)
[2] 101 <- (0,160)
[2] 102 <- (0,213)
[2] 103 <- (0,225)
[2] 104 <- (0,231)
[2] 105 <- (0,298)
[2] 106 <- (0,345)
[2] 107 <- (0,355)
[2] 108 <- (0,356)
[2] 109 <- (0,386)
[2] 110 <- (0,70)
[2] 111 <- (0,104)
[2] 112 <- (0,136)
[2] 113 <- (0,198)
[2] 114 <- (0,8)
[2] 115 <- (0,13)
[2] 116 <- (0,91)
[2] 117 <- (0,115)
[2] 118 <- (0,122)
[2] 119 <- (0,134)
[2] 120 <- (0,164)
[2] 121 <- (0,172)
[2] 122 <- (0,301)
[2] 123 <- (0,320)
[2] 124 <- (0,325)
[2] 125 <- (0,326)
[2] 126 <- (0,329)
[2] 127 <- (0,330)
[2] 128 <- (0,334)
[2] 129 <- (0,352)
[2] 130 <- (0,357)
[2] 131 <- (0,393)
[2] 132 <- (0,396)
[2] 133 <- (0,429)
[2] 134 <- (0,430)
[2] 135 <- (0,431)
[2] 136 <- (0,432)
[2] 137 <- (0,433)
[2] 138 <- (0,434)
[2] 139 <- (0,435)
[2] 140 <- (0,436)
[2] 141 <- (0,448)
[2] 142 <- (0,449)
[2] 143 <- (0,450)
[2] 144 <- (0,451)
[2] 145 <- (0,458)
[2] 146 <- (0,459)
[2] 147 <- (0,467)
[2] 148 <- (0,468)
[2] 149 <- (0,470)
[2] 150 <- (0,472)
[2] 151 <- (0,473)
[2] 152 <- (0,476)
[2] 153 <- (0,479)
[2] 154 <- (0,481)
[2] 155 <- (0,482)
[2] 156 <- (0,495)
[2] 157 <- (0,503)
[2] 158 <- (0,505)
[2] 159 <- (0,511)
[2] 160 <- (0,516)
[2] 161 <- (0,519)
[2] 162 <- (0,521)
[2] 163 <- (0,523)
[2] 164 <- (0,524)
[2] 165 <- (0,528)
[2] 166 <- (0,530)
[2] 167 <- (0,531)
[2] 168 <- (0,536)
[2] 169 <- (0,539)
[2] 170 <- (0,540)
[2] 171 <- (0,541)
[2] 172 <- (0,546)
[2] 173 <- (0,547)
[2] 174 <- (0,550)
[2] 175 <- (0,554)
[2] 176 <- (0,559)
[2] 177 <- (0,561)
[2] 178 <- (0,566)
[2] 179 <- (0,578)
[2] 180 <- (0,580)
[2] 181 <- (0,582)
[2] 182 <- (0,592)
[2] 183 <- (0,597)
[2] 184 <- (0,601)
[2] 185 <- (0,604)
[2] 186 <- (0,614)
[2] 187 <- (0,437)
[2] 188 <- (0,460)
[2] 189 <- (0,506)
[2] 190 <- (0,514)
[2] 191 <- (0,600)
[2] 192 <- (0,606)
[2] 193 <- (0,401)
[2] 194 <- (0,520)
[2] 195 <- (0,402)
[2] 196 <- (0,446)
[2] 197 <- (0,447)
[2] 198 <- (0,452)
[2] 199 <- (0,453)
[2] 200 <- (0,454)
[2] 201 <- (0,463)
[2] 202 <- (0,483)
[2] 203 <- (0,504)
[2] 204 <- (0,507)
[2] 205 <- (0,526)
[2] 206 <- (0,527)
[2] 207 <- (0,529)
[2] 208 <- (0,552)
[2] 209 <- (0,568)
[2] 210 <- (0,574)
[2] 211 <- (0,599)
[2] 212 <- (0,608)
[2] 213 <- (0,610)
[2] 214 <- (0,611)
[3] Number of roots=0, leaves=206, remote ranks=1
[3] 0 <- (0,2)
[3] 1 <- (0,3)
[3] 2 <- (0,7)
[3] 3 <- (0,8)
[3] 4 <- (0,9)
[3] 5 <- (0,10)
[3] 6 <- (0,13)
[3] 7 <- (0,15)
[3] 8 <- (0,16)
[3] 9 <- (0,23)
[3] 10 <- (0,24)
[3] 11 <- (0,30)
[3] 12 <- (0,36)
[3] 13 <- (0,45)
[3] 14 <- (0,46)
[3] 15 <- (0,51)
[3] 16 <- (0,53)
[3] 17 <- (0,65)
[3] 18 <- (0,67)
[3] 19 <- (0,68)
[3] 20 <- (0,72)
[3] 21 <- (0,73)
[3] 22 <- (0,77)
[3] 23 <- (0,79)
[3] 24 <- (0,84)
[3] 25 <- (0,91)
[3] 26 <- (0,101)
[3] 27 <- (0,102)
[3] 28 <- (0,112)
[3] 29 <- (0,114)
[3] 30 <- (0,115)
[3] 31 <- (0,116)
[3] 32 <- (0,120)
[3] 33 <- (0,122)
[3] 34 <- (0,123)
[3] 35 <- (0,127)
[3] 36 <- (0,134)
[3] 37 <- (0,135)
[3] 38 <- (0,137)
[3] 39 <- (0,138)
[3] 40 <- (0,141)
[3] 41 <- (0,143)
[3] 42 <- (0,144)
[3] 43 <- (0,148)
[3] 44 <- (0,158)
[3] 45 <- (0,159)
[3] 46 <- (0,164)
[3] 47 <- (0,167)
[3] 48 <- (0,168)
[3] 49 <- (0,170)
[3] 50 <- (0,172)
[3] 51 <- (0,173)
[3] 52 <- (0,174)
[3] 53 <- (0,175)
[3] 54 <- (0,179)
[3] 55 <- (0,183)
[3] 56 <- (0,184)
[3] 57 <- (0,185)
[3] 58 <- (0,189)
[3] 59 <- (0,191)
[3] 60 <- (0,192)
[3] 61 <- (0,203)
[3] 62 <- (0,209)
[3] 63 <- (0,221)
[3] 64 <- (0,222)
[3] 65 <- (0,226)
[3] 66 <- (0,229)
[3] 67 <- (0,235)
[3] 68 <- (0,236)
[3] 69 <- (0,251)
[3] 70 <- (0,252)
[3] 71 <- (0,254)
[3] 72 <- (0,259)
[3] 73 <- (0,265)
[3] 74 <- (0,266)
[3] 75 <- (0,268)
[3] 76 <- (0,271)
[3] 77 <- (0,272)
[3] 78 <- (0,276)
[3] 79 <- (0,277)
[3] 80 <- (0,293)
[3] 81 <- (0,294)
[3] 82 <- (0,297)
[3] 83 <- (0,301)
[3] 84 <- (0,302)
[3] 85 <- (0,317)
[3] 86 <- (0,320)
[3] 87 <- (0,325)
[3] 88 <- (0,326)
[3] 89 <- (0,329)
[3] 90 <- (0,330)
[3] 91 <- (0,333)
[3] 92 <- (0,334)
[3] 93 <- (0,352)
[3] 94 <- (0,357)
[3] 95 <- (0,372)
[3] 96 <- (0,383)
[3] 97 <- (0,389)
[3] 98 <- (0,393)
[3] 99 <- (0,59)
[3] 100 <- (0,121)
[3] 101 <- (0,136)
[3] 102 <- (0,163)
[3] 103 <- (0,181)
[3] 104 <- (0,186)
[3] 105 <- (0,187)
[3] 106 <- (0,198)
[3] 107 <- (0,228)
[3] 108 <- (0,299)
[3] 109 <- (0,64)
[3] 110 <- (0,80)
[3] 111 <- (0,82)
[3] 112 <- (0,105)
[3] 113 <- (0,109)
[3] 114 <- (0,110)
[3] 115 <- (0,117)
[3] 116 <- (0,139)
[3] 117 <- (0,153)
[3] 118 <- (0,193)
[3] 119 <- (0,202)
[3] 120 <- (0,206)
[3] 121 <- (0,219)
[3] 122 <- (0,246)
[3] 123 <- (0,247)
[3] 124 <- (0,304)
[3] 125 <- (0,305)
[3] 126 <- (0,367)
[3] 127 <- (0,395)
[3] 128 <- (0,402)
[3] 129 <- (0,412)
[3] 130 <- (0,413)
[3] 131 <- (0,414)
[3] 132 <- (0,415)
[3] 133 <- (0,416)
[3] 134 <- (0,417)
[3] 135 <- (0,418)
[3] 136 <- (0,419)
[3] 137 <- (0,443)
[3] 138 <- (0,444)
[3] 139 <- (0,445)
[3] 140 <- (0,446)
[3] 141 <- (0,447)
[3] 142 <- (0,452)
[3] 143 <- (0,453)
[3] 144 <- (0,454)
[3] 145 <- (0,462)
[3] 146 <- (0,463)
[3] 147 <- (0,465)
[3] 148 <- (0,474)
[3] 149 <- (0,478)
[3] 150 <- (0,480)
[3] 151 <- (0,483)
[3] 152 <- (0,486)
[3] 153 <- (0,488)
[3] 154 <- (0,489)
[3] 155 <- (0,491)
[3] 156 <- (0,499)
[3] 157 <- (0,500)
[3] 158 <- (0,502)
[3] 159 <- (0,504)
[3] 160 <- (0,507)
[3] 161 <- (0,508)
[3] 162 <- (0,513)
[3] 163 <- (0,517)
[3] 164 <- (0,518)
[3] 165 <- (0,526)
[3] 166 <- (0,527)
[3] 167 <- (0,529)
[3] 168 <- (0,535)
[3] 169 <- (0,543)
[3] 170 <- (0,552)
[3] 171 <- (0,553)
[3] 172 <- (0,557)
[3] 173 <- (0,558)
[3] 174 <- (0,563)
[3] 175 <- (0,565)
[3] 176 <- (0,568)
[3] 177 <- (0,569)
[3] 178 <- (0,572)
[3] 179 <- (0,574)
[3] 180 <- (0,575)
[3] 181 <- (0,581)
[3] 182 <- (0,583)
[3] 183 <- (0,589)
[3] 184 <- (0,595)
[3] 185 <- (0,598)
[3] 186 <- (0,599)
[3] 187 <- (0,602)
[3] 188 <- (0,608)
[3] 189 <- (0,610)
[3] 190 <- (0,611)
[3] 191 <- (0,401)
[3] 192 <- (0,411)
[3] 193 <- (0,464)
[3] 194 <- (0,556)
[3] 195 <- (0,567)
[3] 196 <- (0,448)
[3] 197 <- (0,468)
[3] 198 <- (0,476)
[3] 199 <- (0,479)
[3] 200 <- (0,519)
[3] 201 <- (0,521)
[3] 202 <- (0,530)
[3] 203 <- (0,540)
[3] 204 <- (0,561)
[3] 205 <- (0,582)
check natural SF
PetscSF Object: 4 MPI processes
type: basic
sort=rank-order
[0] Number of roots=0, leaves=0, remote ranks=0
[1] Number of roots=0, leaves=0, remote ranks=0
[2] Number of roots=0, leaves=0, remote ranks=0
[3] Number of roots=0, leaves=0, remote ranks=0
vector view - natural order
Vec Object: 4 MPI processes
type: mpi
Process [0]
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Process [1]
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Process [2]
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Process [3]
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Set DMPlex local to global mapping, done
Force to stop
-------------- next part --------------
# vtk DataFile Version 2.0
unstructured mesh, Created by Gmsh
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 223 double
0 0 0
3 0 0
3 0 2
0 0 2
0.2 0 0.8
0.4 0 0.8
0.8 0 0.8
1.4 0 0.8
2.2 0 0.8
0.8 0 0.6
0.8 0 1
0.8 0 1.2
0.1999999999991203 0 0
0.3999999999983593 0 0
0.5999999999974546 0 0
0.799999999996742 0 0
0.9999999999960294 0 0
1.199999999995317 0 0
1.399999999994604 0 0
1.599999999994632 0 0
1.799999999995399 0 0
1.999999999996166 0 0
2.199999999996932 0 0
2.3999999999977 0 0
2.599999999998466 0 0
2.799999999999233 0 0
0 0 1.799999999999167
0 0 1.6
0 0 1.400000000001387
0 0 1.200000000002774
0 0 1.000000000004117
0 0 0.8000000000033287
0 0 0.6000000000024965
0 0 0.4000000000016644
0 0 0.200000000000832
2.800000000002174 0 2
2.600000000002023 0 2
2.400000000003 0 2
2.200000000002438 0 2
2.000000000001934 0 2
1.800000000002824 0 2
1.600000000003743 0 2
1.400000000003922 0 2
1.200000000003361 0 2
1.000000000002801 0 2
0.8000000000022411 0 2
0.600000000001681 0 2
0.4000000000011208 0 2
0.2000000000005602 0 2
3 0 0.1999999999996293
3 0 0.3999999999991157
3 0 0.5999999999985328
3 0 0.7999999999979498
3 0 0.9999999999973885
3 0 1.199999999997894
3 0 1.39999999999842
3 0 1.599999999998947
3 0 1.799999999999474
1.599999999999545 0 0.8
1.799999999998915 0 0.8
1.999999999999414 0 0.8
0.999999999999776 0 0.8
1.199999999999581 0 0.8
0.5999999999994576 0 0.8
2.379214504531294 0 1.405373076248138
1.704991835910612 0 1.402778606292781
1.23408069164269 0 1.458669309885507
0.4685665670601734 0 1.508019509283279
2.497738191218041 0 0.4349897042973965
2.610303185213958 0 0.9878017997043026
1.296692364559492 0 0.3986179228025756
1.909153318464776 0 0.4063140589542637
0.4623896075858526 0 0.3881084953993027
2.05931870173157 0 1.584337375247877
2.038721804512762 0 1.194360902254602
0.837837785556555 0 1.66744985915262
1.397714914184593 0 1.148692746366346
0.3742908223262418 0 1.174082908003071
2.665804146696016 0 1.663931138500056
1.497313596493072 0 1.673656798244939
2.227235772357356 0 0.3329268292685604
0.9938576986066314 0 0.3080338817095
2.697653501978651 0 1.292297570997389
1.096142514170803 0 1.1
1.605753072669749 0 0.491762523868872
1.69999999999923 0 1.091666666666887
2.71251200913381 0 0.7161239977234372
2.351344489130117 0 1.699121968393499
1.782173742909407 0 1.712990171238928
2.280062762525843 0 1.050264328024126
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1.065208746302501 0 1.729902382621085
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1.478220357618803 0 1.470719894825082
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0.6264666351387723 0 1.347553521562679
2.490235690235405 0 0.2265993265990937
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1.172046878761573 0 1.270534731754538
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2.789881440617124 0 1.789881440617261
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1.332511029850933 0 1.615932245360217
0.9894053075619311 0 1.229077937292363
2.577637560506477 0 0.8159297007077034
2.375571518833167 0 0.3445824808775385
2.476279702749816 0 1.597328424196379
0.1460062754235328 0 0.3970029733771729
1.265344920154252 0 0.6329578502716723
1.935835647926898 0 0.6344934670553749
2.069281594968028 0 0.3940954484269742
2.29506823171605 0 1.851926700449395
0.6361007615483169 0 0.4081024174896069
2.863891877583948 0 1.299999999998157
1.121879385586257 0 0.3968719495845081
2.866792480267094 0 0.6999999999982413
0.640716822374706 0 1.564448591963968
1.465065170338345 0 0.3920979873954564
1.461565556697408 0 1.846878377665404
1.313202543621524 0 0.1520409031873539
1.700610872801345 0 0.9324817812131065
1.771531265638171 0 0.3844760265298595
0.9316739727448209 0 0.6501584876562788
0.1553841991341328 0 1.844615800865806
2.83194205855847 0 0.1548176119178121
0.7554673115764591 0 1.852455315700264
1.543297705630606 0 0.6692863615262314
2.573954635025233 0 0.5925173061601432
1.116582444085043 0 0.9359264074853757
1.025953898186142 0 0.1576523269573968
2.847994284561111 0 1.642990843504484
0.9600149914842826 0 0.4894980205592772
2.205556830158146 0 1.69321441508239
2.627328673572279 0 0.1531224420159892
2.642687904572294 0 1.141659092120952
2.834577319798835 0 0.3225122389814655
0.2983336950301236 0 1.882071991275122
0.8122248620838787 0 1.44321626841715
0.6996996928159201 0 0.1181368787597825
0.1444936133652446 0 0.1476295673217159
0.1529060387700887 0 0.638313084543821
2.293874040543968 0 0.6803984596738974
0.3457826007705083 0 0.1617330481724948
0.1220964204329312 0 1.709053761707669
2.657398203846927 0 1.861014030866323
0.3295446886489339 0 1.593181052285239
1.098772336102051 0 1.885940614691867
2.652721607232833 0 0.3937434646924954
0.6818782899869689 0 0.9475655802543401
1.931167058145805 0 1.69635186532083
1.581219843306312 0 0.1461740902663257
2.447705348719867 0 1.095025095160731
1.257592110345052 0 1.147316202898446
1.757518958348691 0 1.860358589513101
2.155116155877665 0 0.1392252118453306
0.6673660677936304 0 1.124812554765165
1.35385707705373 0 1.313046155723573
0.4646889322555703 0 1.662758702500851
1.187554783129829 0 1.625867724065088
1.077557767903738 0 1.371623591692298
1.680167363715666 0 0.6787096877578693
0.6812821612349281 0 0.6812821612351486
2.246701249406042 0 0.9314973650661384
2.169432754969319 0 1.119127586148288
0.1164067881991524 0 0.916406788200873
0.1014459250697099 0 1.100000000003446
2.890346327029697 0 1.890346327028477
0.3102787716159667 0 0.3755545051061105
0.9318698800848435 0 1.100575903196775
CELLS 469 1789
1 0
1 1
1 2
1 3
1 4
1 5
1 6
1 7
1 8
1 9
1 10
1 11
2 0 12
2 12 13
2 13 14
2 14 15
2 15 16
2 16 17
2 17 18
2 18 19
2 19 20
2 20 21
2 21 22
2 22 23
2 23 24
2 24 25
2 25 1
2 3 26
2 26 27
2 27 28
2 28 29
2 29 30
2 30 31
2 31 32
2 32 33
2 33 34
2 34 0
2 2 35
2 35 36
2 36 37
2 37 38
2 38 39
2 39 40
2 40 41
2 41 42
2 42 43
2 43 44
2 44 45
2 45 46
2 46 47
2 47 48
2 48 3
2 1 49
2 49 50
2 50 51
2 51 52
2 52 53
2 53 54
2 54 55
2 55 56
2 56 57
2 57 2
2 7 58
2 58 59
2 59 60
2 60 8
2 6 61
2 61 62
2 62 7
2 5 63
2 63 6
2 4 5
2 6 9
2 10 6
2 11 10
3 209 104 128
3 103 154 194
3 164 80 119
3 97 164 119
3 11 104 209
3 194 154 4
3 61 96 62
3 8 60 97
3 69 158 133
3 84 171 94
3 187 23 24
3 63 107 150
3 28 139 100
3 69 133 110
3 67 151 104
3 20 94 204
3 105 23 187
3 79 101 145
3 11 98 191
3 103 194 161
3 102 161 193
3 75 93 131
3 65 145 101
3 95 119 181
3 181 119 68
3 194 32 161
3 193 161 34
3 5 63 150
3 4 154 5
3 121 72 196
3 94 171 108
3 75 148 93
3 72 221 196
3 11 191 104
3 46 138 99
3 65 137 136
3 84 94 175
3 75 179 99
3 74 111 109
3 28 100 144
3 61 176 96
3 104 151 128
3 103 221 154
3 70 162 96
3 62 96 162
3 20 149 94
3 71 97 163
3 221 72 154
3 4 150 118
3 85 137 127
3 76 127 137
3 60 163 97
3 85 136 137
3 19 20 204
3 64 125 134
3 82 134 125
3 4 5 150
3 70 96 168
3 73 109 111
3 70 173 108
3 63 154 115
3 28 29 139
3 32 33 161
3 33 34 161
3 125 146 205
3 71 175 149
3 65 101 137
3 71 164 97
3 50 51 106
3 79 156 101
3 7 127 126
3 9 115 166
3 92 201 105
3 68 105 201
3 66 101 156
3 70 116 173
3 9 166 143
3 94 149 175
3 5 154 63
3 8 97 195
3 53 54 110
3 75 99 170
3 89 205 146
3 11 157 98
3 86 133 158
3 46 99 179
3 66 210 101
3 75 131 179
3 90 166 121
3 73 111 152
3 72 121 166
3 59 60 113
3 74 146 111
3 77 107 128
3 77 100 139
3 42 43 112
3 77 151 100
3 65 136 109
3 67 199 100
3 64 146 125
3 67 100 151
3 8 195 135
3 86 181 106
3 83 120 157
3 76 126 127
3 74 113 132
3 78 134 117
3 82 117 134
3 27 28 144
3 85 113 136
3 74 136 113
3 46 47 138
3 92 105 187
3 67 104 170
3 23 105 141
3 53 110 133
3 106 181 201
3 54 167 110
3 120 213 157
3 55 56 117
3 71 163 124
3 70 123 162
3 60 132 113
3 95 135 195
3 6 61 155
3 6 155 10
3 73 153 109
3 71 149 114
3 7 126 62
3 102 196 221
3 63 202 107
3 73 152 186
3 90 140 143
3 81 143 140
3 59 113 174
3 18 204 108
3 7 58 127
3 51 169 106
3 86 106 169
3 82 110 167
3 36 37 130
3 21 114 149
3 72 115 154
3 50 106 189
3 68 159 105
3 17 116 183
3 74 109 136
3 13 14 121
3 94 108 204
3 38 39 122
3 101 210 137
3 43 200 112
3 75 170 191
3 85 174 113
3 77 150 107
3 37 165 130
3 88 142 145
3 79 145 142
3 25 178 187
3 106 201 189
3 66 120 210
3 93 112 200
3 64 160 152
3 7 162 123
3 8 132 60
3 16 17 183
3 44 45 131
3 59 124 163
3 92 189 201
3 76 137 210
3 84 124 214
3 65 109 153
3 52 53 133
3 68 201 181
3 8 135 216
3 105 159 141
3 104 191 170
3 64 134 160
3 77 139 118
3 97 119 195
3 15 16 140
3 7 123 180
3 87 130 165
3 20 21 149
3 18 19 204
3 24 25 187
3 18 108 173
3 70 108 171
3 64 111 146
3 84 214 180
3 7 62 162
3 80 141 159
3 59 163 60
3 69 110 188
3 87 160 130
3 78 130 160
3 64 152 111
3 57 129 184
3 7 180 58
3 82 167 117
3 55 117 167
3 38 122 165
3 82 188 110
3 21 208 114
3 77 118 150
3 78 129 198
3 74 217 146
3 75 191 148
3 90 121 192
3 80 114 208
3 12 196 193
3 6 176 61
3 6 9 176
3 79 112 156
3 78 117 184
3 78 198 130
3 44 131 200
3 122 186 165
3 14 192 121
3 74 132 217
3 3 26 177
3 1 49 178
3 1 178 25
3 3 177 48
3 93 212 112
3 79 172 112
3 68 119 159
3 93 200 131
3 70 171 123
3 84 123 171
3 56 57 184
3 42 112 172
3 73 122 203
3 77 128 151
3 73 203 153
3 71 114 164
3 80 164 114
3 39 147 122
3 39 40 147
3 56 184 117
3 98 148 191
3 91 211 138
3 78 184 129
3 70 168 116
3 81 116 168
3 17 173 116
3 85 127 174
3 58 174 127
3 63 115 215
3 9 215 115
3 91 199 211
3 84 175 124
3 71 124 175
3 72 166 115
3 80 159 119
3 40 41 207
3 81 183 116
3 41 42 172
3 12 13 196
3 22 23 141
3 4 118 218
3 16 183 140
3 35 198 129
3 87 165 186
3 41 142 207
3 52 133 169
3 86 169 133
3 45 46 179
3 21 22 208
3 98 157 213
3 41 172 142
3 95 195 119
3 92 187 178
3 66 213 120
3 102 193 196
3 100 199 144
3 59 214 124
3 84 180 123
3 61 62 182
3 82 125 188
3 83 206 120
3 10 209 202
3 31 32 194
3 4 31 194
3 0 193 34
3 0 12 193
3 35 36 198
3 13 121 196
3 73 186 122
3 122 147 203
3 87 152 160
3 83 182 126
3 62 126 182
3 86 158 181
3 95 181 158
3 90 143 166
3 83 126 206
3 80 208 141
3 76 206 126
3 17 18 173
3 65 153 145
3 69 135 158
3 95 158 135
3 107 209 128
3 69 188 205
3 125 205 188
3 35 129 220
3 57 220 129
3 10 11 209
3 9 143 185
3 37 38 165
3 78 160 134
3 54 55 167
3 45 179 131
3 36 130 198
3 6 202 63
3 6 10 202
3 51 52 169
3 107 202 209
3 88 145 153
3 58 59 174
3 61 182 155
3 79 142 172
3 66 148 213
3 98 213 148
3 89 132 216
3 8 216 132
3 9 185 176
3 40 207 147
3 69 205 135
3 89 135 205
3 6 63 215
3 6 215 9
3 49 50 189
3 89 217 132
3 81 140 183
3 81 168 185
3 96 185 168
3 47 48 190
3 118 139 219
3 30 31 218
3 4 218 31
3 14 15 192
3 15 140 192
3 90 192 140
3 112 212 156
3 26 27 197
3 43 44 200
3 2 220 57
3 2 35 220
3 83 222 155
3 10 222 11
3 58 214 59
3 29 30 219
3 83 157 222
3 76 210 206
3 120 206 210
3 89 216 135
3 87 186 152
3 103 161 221
3 91 138 190
3 81 185 143
3 47 190 138
3 88 153 203
3 66 212 148
3 93 148 212
3 91 197 144
3 89 146 217
3 99 138 211
3 29 219 139
3 83 155 182
3 88 207 142
3 22 141 208
3 27 144 197
3 88 147 207
3 91 144 199
3 88 203 147
3 67 170 211
3 99 211 170
3 30 218 219
3 118 219 218
3 67 211 199
3 96 176 185
3 49 189 178
3 91 177 197
3 48 177 190
3 66 156 212
3 91 190 177
3 10 155 222
3 92 178 189
3 11 222 157
3 26 197 177
3 102 221 161
3 58 180 214
CELL_TYPES 469
1
1
1
1
1
1
1
1
1
1
1
1
3
3
3
3
3
3
3
3
3
3
3
3
3
3
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3
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3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
5
5
5
5
5
5
5
5
5
5
5
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5
5
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5
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