[petsc-users] Errors encountered when linking against a successful build including MUMPS

[Smith, Barry F.]

   Ellen,

   Send configure.log and make.log to petsc-maint at mcs.anl.gov

   Barry

On Jun 23, 2018, at 7:51 PM, Ellen M. Price <ellen.price at cfa.harvard.edu> wrote:
> 
> I just successfully (re)-compiled petsc-3.9.2 to use my MUMPS install.
> The PETSc build process completed with no errors and I installed my new
> shared libs. However, when I tried linking against the new libraries, I
> get the following errors:
> 
> /home/eprice/software/petsc-opt/lib/libpetsc.so: undefined reference to
> `MatMumpsSetIcntl'
> /home/eprice/software/petsc-opt/lib/libpetsc.so: undefined reference to
> `MatPartitioningParmetisSetRepartition'
> /home/eprice/software/petsc-opt/lib/libpetsc.so: undefined reference to
> `MatSolverTypeRegister_MUMPS'
> /home/eprice/software/petsc-opt/lib/libpetsc.so: undefined reference to
> `MatPartitioningCreate_Parmetis'
> /home/eprice/software/petsc-opt/lib/libpetsc.so: undefined reference to
> `MatPartitioningCreate_PTScotch'
> collect2: error: ld returned 1 exit status
> 
> This is confusing, because I can't see any reason these functions
> shouldn't be included in the final build. My configure command follows:
> 
> ./configure --prefix=/home/eprice/software/petsc-opt --with-hdf5=1
> --with-hdf5-dir=/home/eprice/software/hdf5-parallel --with-mpe=1
> --with-mpe-dir=/home/eprice/software/mpe --with-debugging=0
> LDFLAGS='-pthread -lz' COPTFLAGS='-O3 -march=native -mtune=native'
> CXXOPTFLAGS='-O3 -march=native -mtune=native' FOPTFLAGS='-O3
> -march=native -mtune=native' --with-mpi=1
> --with-mpi-dir=/home/eprice/software/mpich --with-mumps=1
> --with-mumps-dir=/home/eprice/software/mumps --with-parmetis=1
> --with-parmetis-dir=/home/eprice/software/parmetis --with-metis=1
> --with-metis-dir=/home/eprice/software/parmetis --with-ptscotch=1
> --with-ptscotch-dir=/home/eprice/software/scotch --with-scalapack=1
> --with-scalapack-dir=/home/eprice/software/scalapack
> 
> Any help is greatly appreciated. I tried picking through the build
> system to find a problem, but it's difficult to understand without docs.
> 
> Ellen