[petsc-users] seg fault with superlu

Thu Dec 6 10:17:06 CST 2018

On Thu, Dec 6, 2018 at 2:55 AM Matthew Knepley via petsc-users <
petsc-users at mcs.anl.gov> wrote:

> Satish,
>
> This is exactly the same method (pzgssvx) that had a problem before. Do
> you remember what happened?
>

Used to have a bug in the row permutation algorithm. The row permutation is
not get populated correctly. It was fixed from PETSc-3.8.x.   If the
current issue is the same as before, a simple "fix" is to use

" -mat_superlu_dist_fact SamePattern_SameRowPerm".

Fande,

>
>   Thanks,
>
>      Matt
>
> On Wed, Dec 5, 2018 at 8:38 PM Smith, Barry F. via petsc-users <
> petsc-users at mcs.anl.gov> wrote:
>
>>
>>    I would start with valgrind see if it finds anything. If not and if
>> you can provide the code that reproduces the problem we can take a look at
>> it.
>>
>>     Barry
>>
>> https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>>
>>
>>
>> > On Dec 5, 2018, at 7:16 PM, Marius Buerkle via petsc-users <
>> petsc-users at mcs.anl.gov> wrote:
>> >
>> > Hi,
>> >
>> > I get the following error duing MatMatSolve. It works for smaller
>> number of processes but if I  increade the number pf processes used it
>> crashes.
>> >
>> > [25]PETSC ERROR:
>> ------------------------------------------------------------------------
>> > [25]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
>> probably memory access out of range
>> > [25]PETSC ERROR: Try option -start_in_debugger or
>> -on_error_attach_debugger
>> > [25]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>> > [25]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
>> OS X to find memory corruption errors
>> > [25]PETSC ERROR: likely location of problem given in stack below
>> > [25]PETSC ERROR: ---------------------  Stack Frames
>> ------------------------------------
>> > [25]PETSC ERROR: Note: The EXACT line numbers in the stack are not
>> available,
>> > [25]PETSC ERROR:       INSTEAD the line number of the start of the
>> function
>> > [25]PETSC ERROR:       is given.
>> > [25]PETSC ERROR: [25] SuperLU_DIST:pzgssvx line 236
>> /home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
>> > [25]PETSC ERROR: [25] MatMatSolve_SuperLU_DIST line 200
>> /home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
>> > [25]PETSC ERROR: [25] MatMatSolve line 3396
>> /home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/src/mat/interface/matrix.c
>> > [25]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> > [25]PETSC ERROR: Signal received
>> > [25]PETSC ERROR: See
>> http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
>> > [25]PETSC ERROR: Petsc Development GIT revision: v3.10.2-723-g2a65a22
>> GIT Date: 2018-11-25 07:45:29 +0100
>> > [25]PETSC ERROR:
>> /home/cdfmat_marius/prog/transomat_latest_test4/transomat on a  named a003
>> by cdfmat_marius Thu Dec  6 10:12:23 2018
>> > [25]PETSC ERROR: Configure options
>> --prefix=/home/cdfmat_marius/prog/petsc/master_gcc_local_debug
>> --with-64-bit-indices=0 --CC=mpicc --COPTFLAGS="-O0 -mtune=generic -g
>> -std=c11 " --CXX=mpicxx --CXXOPTFLAGS="-O0 -mtune=generic -g -std=c++11 "
>> --FC=mpif90 --FOPTFLAGS="-O0 -mtune=generic -g -fbacktrace -g "
>> --with-mpi=1 --with-x=0
>> --download-parmetis=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/git.parmetis.tar.gz
>> --download-metis=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/git.metis.tar.gz
>> --with-blaslapack-lib="
>> -L/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64
>> -Wl,--no-as-needed -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential
>> -lmkl_core -lmkl_blacs_openmpi_lp64 -lpthread -lm -ldl "
>> --with-scalapack-lib="
>> -L/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64
>> -Wl,--no-as-needed -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential
>> -lmkl_core -lmkl_blacs_openmpi_lp64 -lpthread -lm -ldl "
>> --download-pastix=no
>> --download-superlu_dist=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/git.superlu_dist.tar.gz
>> --download-superlu_dist-commit=HEAD
>> --download-hwloc=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/hwloc-1.11.1.tar.gz
>> --download-sowing=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/git.sowing.tar.gz
>> --with-mkl_pardiso-dir=/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl
>> --with-openmp=0 --with-pthread=0
>> --download-elemental=/home/cdfmat_marius/prog/petsc/master_build_gcc_local/petsc/externalpackages/git.elemental.tar.gz
>> --download-elemental-commit=HEAD
>> --with-mkl_cpardiso-dir=/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl
>> --with-mkl_sparse_optimize-dir=/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl
>> --with-mkl_sparse_sp2m-dir=/home/cdfmat_marius/intel/compilers_and_libraries_2019.1.144/linux/mkl
>> --with-cxx-dialect=c++11 --with-scalar-type=complex --with-debugging=1
>> >
>> > bestm
>> > marius
>>
>>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <http://www.cse.buffalo.edu/~knepley/>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20181206/33e70538/attachment.html>