[petsc-users] A bad commit affects MOOSE

Kong, Fande fande.kong at inl.gov
Mon Apr 2 16:46:37 CDT 2018


Hi All,

I am trying to upgrade PETSc from 3.7.6 to 3.8.3 for MOOSE and its
applications. I have a error message for a standard test:









*preconditioners/pbp.lots_of_variables: MPI had an
errorpreconditioners/pbp.lots_of_variables:
------------------------------------------------preconditioners/pbp.lots_of_variables:
Other MPI error, error stack:preconditioners/pbp.lots_of_variables:
PMPI_Comm_dup(177)..................: MPI_Comm_dup(comm=0x84000001,
new_comm=0x97d1068) failedpreconditioners/pbp.lots_of_variables:
PMPI_Comm_dup(162)..................:
preconditioners/pbp.lots_of_variables:
MPIR_Comm_dup_impl(57)..............:
preconditioners/pbp.lots_of_variables:
MPIR_Comm_copy(739).................:
preconditioners/pbp.lots_of_variables:
MPIR_Get_contextid_sparse_group(614): Too many communicators (0/2048 free
on this process; ignore_id=0)*


I did "git bisect', and the following commit introduces this issue:








*commit 49a781f5cee36db85e8d5b951eec29f10ac13593Author: Stefano Zampini
<stefano.zampini at gmail.com <stefano.zampini at gmail.com>>Date:   Sat Nov 5
20:15:19 2016 +0300    PCHYPRE: use internal Mat of type MatHYPRE
hpmat already stores two HYPRE vectors*

Before I debug line-by-line, anyone has a clue on this?


Fande,
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