[petsc-users] Error with PETSc on K computer
Satish Balay
balay at mcs.anl.gov
Wed Jun 1 14:18:21 CDT 2016
What does -X9 in --FFLAGS="-X9 -O0" do?
can you send configure.log for this build?
And does the attached patch make a difference with this example?
[suggest doing a separate temporary build of PETSc - in a different source location - to check this.]
Satish
On Wed, 1 Jun 2016, TAY wee-beng wrote:
> Hi Satish,
>
> Only partially working:
>
> [t00196 at b04-036 tutorials]$ mpiexec -n 2 ./ex4f90
> jwe1050i-w The hardware barrier couldn't be used and continues processing
> using the software barrier.
> taken to (standard) corrective action, execution continuing.
> jwe1050i-w The hardware barrier couldn't be used and continues processing
> using the software barrier.
> taken to (standard) corrective action, execution continuing.
> Vec Object:Vec Object:initial vector:initial vector: 1 MPI processes
> type: seq
> 10
> 20
> 30
> 40
> 50
> 60
> 1 MPI processes
> type: seq
> 10
> 20
> 30
> 40
> 50
> 60
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [1]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> find memory corruption errors
> [1]PETSC ERROR: likely location of problem given in stack below
> [1]PETSC ERROR: --------------------- Stack Frames
> ------------------------------------
> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [1]PETSC ERROR: INSTEAD the line number of the start of the function
> [1]PETSC ERROR: is given.
> [1]PETSC ERROR: [1] F90Array1dCreate line 50
> /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c
> [1]PETSC ERROR: --------------------- Error Message
> ------------------------------------------[0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: --------------------- Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> [0]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] F90Array1dCreate line 50
> /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [1]PETSC ERROR: Signal received
> [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> [1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015
> [1]PETSC ERROR: ./ex4f90 on a petsc-3.6.3_debug named b04-036 by Unknown Wed
> Jun 1 13:23:41 2016
> [1]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0" --LD_SHARED=
> --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> --with-scalapack-lib=-SCALAPACK
> --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0 --with-hypre=1
> --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4
> [1]PETSC ERROR: #1 User provided function() line 0 in unknown file
> --------------------------------------------------------------------------
> [mpi::mpi-api::mpi-abort]
> MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
> with errorcode 59.
>
> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> You may or may not see output from other processes, depending on
> exactly when Open MPI kills them.
> --------------------------------------------------------------------------
> [b04-036:28998]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(orte_errmgr_base_error_abort+0x84)
> [0xffffffff11360404]
> [b04-036:28998]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(ompi_mpi_abort+0x51c)
> [0xffffffff1110391c]
> [b04-036:28998] /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(MPI_Abort+0x6c)
> [0xffffffff1111b5ec]
> [b04-036:28998]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libtrtmet_c.so.1(MPI_Abort+0x2c)
> [0xffffffff00281bf0]
> [b04-036:28998] ./ex4f90 [0x292548]
> [b04-036:28998] ./ex4f90 [0x29165c]
> [b04-036:28998] /opt/FJSVxosmmm/lib64/libmpgpthread.so.1(_IO_funlockfile+0x5c)
> [0xffffffff121e1974]
> [b04-036:28998] ./ex4f90 [0x9f6748]
> [b04-036:28998] ./ex4f90 [0x9f0ea4]
> [b04-036:28998] ./ex4f90 [0x2c76a0]
> [b04-036:28998] ./ex4f90(MAIN__+0x38c) [0x10688c]
> [b04-036:28998] ./ex4f90(main+0xec) [0x268e91c]
> [b04-036:28998] /lib64/libc.so.6(__libc_start_main+0x194) [0xffffffff138cb81c]
> [b04-036:28998] ./ex4f90 [0x1063ac]
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch
> system) has told this process to end
> [1]PETSC ERROR: Tr--------------------
> [0]PETSC ERROR: Signal received
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015
> [0]PETSC ERROR: ./ex4f90 on a petsc-3.6.3_debug named b04-036 by Unknown Wed
> Jun 1 13:23:41 2016
> [0]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0" --LD_SHARED=
> --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> --with-scalapack-lib=-SCALAPACK
> --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0 --with-hypre=1
> --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4
> [0]PETSC ERROR: #1 User provided function() line 0 in unknown file
> --------------------------------------------------------------------------
> [mpi::mpi-api::mpi-abort]
> MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
> with errorcode 59.
>
> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> You may or may not see output from other processes, depending on
> exactly when Open MPI kills them.
> --------------------------------------------------------------------------
> [b04-036:28997]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(orte_errmgr_base_error_abort+0x84)
> [0xffffffff11360404]
> [b04-036:28997]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(ompi_mpi_abort+0x51c)
> [0xffffffff1110391c]
> [b04-036:28997] /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(MPI_Abort+0x6c)
> [0xffffffff1111b5ec]
> [b04-036:28997]
> /opt/FJSVtclang/GM-1.2.0-20/lib64/libtrtmet_c.so.1(MPI_Abort+0x2c)
> [0xffffffff00281bf0]
> [b04-036:28997] ./ex4f90 [0x292548]
> [b04-036:28997] ./ex4f90 [0x29165c]
> [b04-036:28997] /opt/FJSVxosmmm/lib64/libmpgpthread.so.1(_IO_funlockfile+0x5c)
> [0xffffffff121e1974]
> [b04-036:28997] ./ex4f90 [0x9f6748]
> [b04-036:28997] ./ex4f90 [0x9f0ea4]
> [b04-036:28997] ./ex4f90 [0x2c76a0]
> [b04-036:28997] ./ex4f90(MAIN__+0x38c) [0x10688c]
> [b04-036:28997] ./ex4f90(main+0xec) [0x268e91c]
> [b04-036:28997] /lib64/libc.so.6(__libc_start_main+0x194) [0xffffffff138cb81c]
> [b04-036:28997] ./ex4f90 [0x1063ac]
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch
> system) has told this process to end
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: --------------------- Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> [0]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] F90Array1dCreate line 50
> /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [0]PETSC ERROR: Signal received
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015
> [0]PETSC ERROR: ./ex4f90 on a petsc-3.6.3_debug named b04-036 by Unknown Wed
> Jun 1 13:23:41 2016
> [0]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0" --LD_SHARED=
> --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> --with-scalapack-lib=-SCALAPACK
> --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> --with-fortran-interfaces=1 --with-debuy option -start_in_debugger or
> -on_error_attach_debugger
> [1]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> find memory corruption errors
> [1]PETSC ERROR: likely location of problem given in stack below
> [1]PETSC ERROR: --------------------- Stack Frames
> ------------------------------------
> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [1]PETSC ERROR: INSTEAD the line number of the start of the function
> [1]PETSC ERROR: is given.
> [1]PETSC ERROR: [1] F90Array1dCreate line 50
> /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c
> [1]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [1]PETSC ERROR: Signal received
> [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> [1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015
> [1]PETSC ERROR: ./ex4f90 on a petsc-3.6.3_debug named b04-036 by Unknown Wed
> Jun 1 13:23:41 2016
> [1]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0" --LD_SHARED=
> --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> --with-scalapack-lib=-SCALAPACK
> --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0 --with-hypre=1
> --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4
> [1]PETSC ERROR: #2 User provided function() line 0 in unknown file
> gging=1 --useThreads=0 --with-hypre=1
> --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4
> [0]PETSC ERROR: #2 User provided function() line 0 in unknown file
> [ERR.] PLE 0019 plexec One of MPI processes was
> aborted.(rank=0)(nid=0x04180034)(CODE=1938,793745140674134016,15104)
> [t00196 at b04-036 tutorials]$
> [ERR.] PLE 0021 plexec The interactive job has aborted with the
> signal.(sig=24)
> [INFO] PJM 0083 pjsub Interactive job 5211401 completed.
>
> Thank you
>
> Yours sincerely,
>
> TAY wee-beng
>
> On 1/6/2016 12:21 PM, Satish Balay wrote:
> > Do PETSc examples using VecGetArrayF90() work?
> >
> > say src/vec/vec/examples/tutorials/ex4f90.F
> >
> > Satish
> >
> > On Tue, 31 May 2016, TAY wee-beng wrote:
> >
> > > Hi,
> > >
> > > I'm trying to run my MPI CFD code on Japan's K computer. My code can run
> > > if I
> > > didn't make use of the PETSc DMDAVecGetArrayF90 subroutine. If it's called
> > >
> > > call DMDAVecGetArrayF90(da_u,u_local,u_array,ierr)
> > >
> > > I get the error below. I have no problem with my code on other clusters
> > > using
> > > the new Intel compilers. I used to have problems with DM when using the
> > > old
> > > Intel compilers. Now on the K computer, I'm using Fujitsu's Fortran
> > > compiler.
> > > How can I troubleshoot?
> > >
> > > Btw, I also tested on the ex13f90 example and it didn't work too. The
> > > error is
> > > below.
> > >
> > >
> > > My code error:
> > >
> > > /* size_x,size_y,size_z 76x130x136*//*
> > > *//* total grid size = 1343680*//*
> > > *//* recommended cores (50k / core) = 26.87360000000000*//*
> > > *//* 0*//*
> > > *//* 1*//*
> > > *//* 1*//*
> > > *//*[3]PETSC ERROR: [1]PETSC ERROR:
> > > ------------------------------------------------------------------------*//*
> > > *//*[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> > > probably memory access out of range*//*
> > > *//*[1]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[1]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[1]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[1]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[1]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> > > available,*//*
> > > *//*[1]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[1]PETSC ERROR: is given.*//*
> > > *//*[1]PETSC ERROR: [1] F90Array3dCreate line 244
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//* 1*//*
> > > *//*------------------------------------------------------------------------*//*
> > > *//*[3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> > > probably memory access out of range*//*
> > > *//*[3]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[3]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[3]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[3]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[0]PETSC ERROR:
> > > ------------------------------------------------------------------------*//*
> > > *//*[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> > > probably memory access out of range*//*
> > > *//*[0]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[0]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[0]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[0]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> > > available,*//*
> > > *//*[0]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[0]PETSC ERROR: is given.*//*
> > > *//*[0]PETSC ERROR: [0] F90Array3dCreate line 244
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//*[0]PETSC ERROR: --------------------- Error Message
> > > ----------------------------------------- 1*//*
> > > *//*[2]PETSC ERROR:
> > > ------------------------------------------------------------------------*//*
> > > *//*[2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> > > probably memory access out of range*//*
> > > *//*[2]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[2]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[2]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[2]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[2]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> > > available,*//*
> > > *//*[2]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[2]PETSC ERROR: is given.*//*
> > > *//*[2]PETSC ERROR: [2] F90Array3dCreate line 244
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//*[2]PETSC ERROR: --------------------- Error Message
> > > -----------------------------------------[3]PETSC ERROR: Note: The EXACT
> > > line
> > > numbers in the stack are not available,*//*
> > > *//*[3]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[3]PETSC ERROR: is given.*//*
> > > *//*[3]PETSC ERROR: [3] F90Array3dCreate line 244
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//*[3]PETSC ERROR: --------------------- Error Message
> > > --------------------------------------------------------------*//*
> > > *//*[3]PETSC ERROR: Signal received*//*
> > > *//*[3]PETSC ERROR: See
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html
> > > for trouble shooting.*//*
> > > *//*[3]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015*//*
> > > *//*[3]PETSC ERROR: ./a-debug.out on a petsc-3.6.3_debug named b04-036 by
> > > Unknown Wed Jun 1 12:54:34 2016*//*
> > > *//*[3]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> > > --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> > > --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0"
> > > --LD_SHARED=
> > > --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> > > --with-shared----------------------*//*
> > > *//*[0]PETSC ERROR: Signal received*//*
> > > *//*[0]PETSC ERROR: See
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html
> > > for trouble shooting.*//*
> > > *//*[0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015*//*
> > > *//*[0]PETSC ERROR: ./a-debug.out on a petsc-3.6.3_debug named b04-036 by
> > > Unknown Wed Jun 1 12:54:34 2016*//*
> > > *//*[0]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> > > --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> > > --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0"
> > > --LD_SHARED=
> > > --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> > > --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> > > --with-scalapack-lib=-SCALAPACK
> > > --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> > > --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0
> > > --with-hypre=1
> > > --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4*//*
> > > *//*[0]PETSC ERROR: #1 User provided function() line 0 in unknown
> > > file*//*
> > > *//*--------------------------------------------------------------------------*//*
> > > *//*[m---------------------*//*
> > > *//*[2]PETSC ERROR: Signal received*//*
> > > *//*[2]PETSC ERROR: See
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html
> > > for trouble shooting.*//*
> > > *//*[2]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015*//*
> > > *//*[2]PETSC ERROR: ./a-debug.out on a petsc-3.6.3_debug named b04-036 by
> > > Unknown Wed Jun 1 12:54:34 2016*//*
> > > *//*[2]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> > > --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> > > --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0"
> > > --LD_SHARED=
> > > --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> > > --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> > > --with-scalapack-lib=-SCALAPACK
> > > --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> > > --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0
> > > --with-hypre=1
> > > --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4*//*
> > > *//*[2]PETSC ERROR: #1 User provided function() line 0 in unknown
> > > file*//*
> > > *//*--------------------------------------------------------------------------*//*
> > > *//*[m[1]PETSC ERROR: --------------------- Error Message
> > > --------------------------------------------------------------*//*
> > > *//*[1]PETSC ERROR: Signal received*//*
> > > *//*[1]PETSC ERROR: See
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html
> > > for trouble shooting.*//*
> > > *//*[1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015*//*
> > > *//*[1]PETSC ERROR: ./a-debug.out on a petsc-3.6.3_debug named b04-036 by
> > > Unknown Wed Jun 1 12:54:34 2016*//*
> > > *//*[1]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> > > --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> > > --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0"
> > > --LD_SHARED=
> > > --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> > > --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> > > --with-scalapack-lib=-SCALAPACK
> > > --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> > > --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0
> > > --with-hypre=1
> > > --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4*//*
> > > *//*[1]PETSC ERROR: #1 User provided function() line 0 ilibraries=0
> > > --with-blas-lapack-lib=-SSL2 --with-scalapack-lib=-SCALAPACK
> > > --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> > > --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0
> > > --with-hypre=1
> > > --with-hypre-dir=/home/hp150306/t00196/lib/hypre-2.10.0b-p4*//*
> > > *//*[3]PETSC ERROR: #1 User provided function() line 0 in unknown
> > > file*//*
> > > *//*--------------------------------------------------------------------------*//*
> > > *//*[mpi::mpi-api::mpi-abort]*//*
> > > *//*MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD*//*
> > > *//*with errorcode 59.*//*
> > > *//*
> > > *//*NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI
> > > processes.*//*
> > > *//*You may or may not see output from other processes, depending on*//*
> > > *//*exactly when Open MPI kills them.*//*
> > > *//*--------------------------------------------------------------------------*//*
> > > *//*[b04-036:28416]
> > > /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(orte_errmgr_base_error_abort+0x84)
> > > [0xffffffff11360404]*//*
> > > *//*[b04-036:28416]
> > > /opt/FJSVtclang/GM-1.2.0-20/lib64/libmpi.so.0(ompi_mpi_abort+0x51c)
> > > [0xffffffff1110391c]*//*
> > > *//*[b04-036:28416] /opt/FJSVtclang/GM-1.2.0-2pi::mpi-api::mpi-abort]*//*
> > > *//*MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD*//*
> > > *//*with errorcode 59.*/
> > >
> > > ex13f90 error:
> > >
> > >
> > > /*[t00196 at b04-036 tutorials]$ mpiexec -np 2 ./ex13f90*//*
> > > *//*jwe1050i-w The hardware barrier couldn't be used and continues
> > > processing
> > > using the software barrier.*//*
> > > *//*taken to (standard) corrective action, execution continuing.*//*
> > > *//*jwe1050i-w The hardware barrier couldn't be used and continues
> > > processing
> > > using the software barrier.*//*
> > > *//*taken to (standard) corrective action, execution continuing.*//*
> > > *//* Hi! We're solving van der Pol using 2 processes.*//*
> > > *//*
> > > *//* t x1 x2*//*
> > > *//*[1]PETSC ERROR:
> > > ------------------------------------------------------------------------*//*
> > > *//*[1]PETSC ERROR: Caught signal number 10 BUS: Bus Error, possibly
> > > illegal
> > > memory access*//*
> > > *//*[1]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[0]PETSC ERROR:
> > > ------------------------------------------------------------------------*//*
> > > *//*[0]PETSC ERROR: Caught signal number 10 BUS: Bus Error, possibly
> > > illegal
> > > memory access*//*
> > > *//*[0]PETSC ERROR: Try option -start_in_debugger or
> > > -on_error_attach_debugger*//*
> > > *//*[0]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[1]PETSC ERROR: or see
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind*//*
> > > *//*[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> > > OS X
> > > to find memory corruption errors*//*
> > > *//*[1]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[1]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[1]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> > > available,*//*
> > > *//*[1]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[1]PETSC ERROR: is given.*//*
> > > *//*[1]PETSC ERROR: [1] F90Array4dCreate line 337
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//*[0]PETSC ERROR: likely location of problem given in stack below*//*
> > > *//*[0]PETSC ERROR: --------------------- Stack Frames
> > > ------------------------------------*//*
> > > *//*[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> > > available,*//*
> > > *//*[0]PETSC ERROR: INSTEAD the line number of the start of the
> > > function*//*
> > > *//*[0]PETSC ERROR: is given.*//*
> > > *//*[0]PETSC ERROR: [0] F90Array4dCreate line 337
> > > /.global/volume2/home/hp150306/t00196/source/petsc-3.6.3/src/sys/f90-src/f90_cwrap.c*//*
> > > *//*[1]PETSC ERROR: --------------------- Error Message
> > > --------------------------------------------------------------*//*
> > > *//*[1]PETSC ERROR: Signal received*//*
> > > *//*[1]PETSC ERROR: See
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html
> > > for trouble shooting.*//*
> > > *//*[1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015*//*
> > > *//*[1]PETSC ERROR: ./ex13f90 on a petsc-3.6.3_debug named b04-036 by
> > > Unknown
> > > Wed Jun 1 13:04:34 2016*//*
> > > *//*[1]PETSC ERROR: Configure options --with-cc=mpifcc --with-cxx=mpiFCC
> > > --with-fc=mpifrt --with-64-bit-pointers=1 --CC=mpifcc --CFLAGS="-Xg -O0"
> > > --CXX=mpiFCC --CXXFLAGS="-Xg -O0" --FC=mpifrt --FFLAGS="-X9 -O0"
> > > --LD_SHARED=
> > > --LDDFLAGS= --with-openmp=1 --with-mpiexec=mpiexec --known-endian=big
> > > --with-shared-libraries=0 --with-blas-lapack-lib=-SSL2
> > > --with-scalapack-lib=-SCALAPACK
> > > --prefix=/home/hp150306/t00196/lib/petsc-3.6.3_debug
> > > --with-fortran-interfaces=1 --with-debugging=1 --useThreads=0
> > > --with-hypre=1
> > > --with-hyp*//*
> > > */
> > >
> > >
> > >
>
>
>
-------------- next part --------------
diff --git a/src/sys/f90-src/f90_cwrap.c b/src/sys/f90-src/f90_cwrap.c
index 217f4e1..8f3512a 100644
--- a/src/sys/f90-src/f90_cwrap.c
+++ b/src/sys/f90-src/f90_cwrap.c
@@ -30,7 +30,7 @@
#define f90array1ddestroyfortranaddr_ f90array1ddestroyfortranaddr
#endif
-PETSC_EXTERN void PETSC_STDCALL f90array1dcreatescalar_(void *,PetscInt *,PetscInt *,F90Array1d * PETSC_F90_2PTR_PROTO_NOVAR);
+PETSC_EXTERN void PETSC_STDCALL f90array1dcreatescalar_(PetscInt *,PetscInt *,void *,F90Array1d * PETSC_F90_2PTR_PROTO_NOVAR);
PETSC_EXTERN void PETSC_STDCALL f90array1daccessscalar_(F90Array1d*,void** PETSC_F90_2PTR_PROTO_NOVAR);
PETSC_EXTERN void PETSC_STDCALL f90array1ddestroyscalar_(F90Array1d *ptr PETSC_F90_2PTR_PROTO_NOVAR);
PETSC_EXTERN void PETSC_STDCALL f90array1dcreatereal_(void *,PetscInt *,PetscInt *,F90Array1d * PETSC_F90_2PTR_PROTO_NOVAR);
@@ -50,7 +50,7 @@ PetscErrorCode F90Array1dCreate(void *array,PetscDataType type,PetscInt start,Pe
PetscFunctionBegin;
if (type == PETSC_SCALAR) {
if (!len) array = PETSC_NULL_SCALAR_Fortran;
- f90array1dcreatescalar_(array,&start,&len,ptr PETSC_F90_2PTR_PARAM(ptrd));
+ f90array1dcreatescalar_(&start,&len,array,ptr PETSC_F90_2PTR_PARAM(ptrd));
} else if (type == PETSC_REAL) {
if (!len) array = PETSC_NULL_REAL_Fortran;
f90array1dcreatereal_(array,&start,&len,ptr PETSC_F90_2PTR_PARAM(ptrd));
diff --git a/src/sys/f90-src/fsrc/f90_fwrap.F b/src/sys/f90-src/fsrc/f90_fwrap.F
index 0a76982..4b4827d 100644
--- a/src/sys/f90-src/fsrc/f90_fwrap.F
+++ b/src/sys/f90-src/fsrc/f90_fwrap.F
@@ -1,7 +1,7 @@
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
- subroutine F90Array1dCreateScalar(array,start,len1,ptr)
+ subroutine F90Array1dCreateScalar(start,len1,array,ptr)
implicit none
#include <petsc/finclude/petscsys.h>
PetscInt start,len1
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