[petsc-users] petsc4py --with-64-bit-indices
Aurelien Ponte
aurelien.ponte at ifremer.fr
Sat Dec 17 14:18:34 CST 2016
Ok, while waiting for an answer for the pip approach, I am trying
another one:
module load python/2.7.10_gnu-4.9.2
setenv MPICC mpiicc
setenv PETSC_DIR /home1/caparmor/aponte/petsc/petsc-3.7.4
setenv PETSC_ARCH linux-gnu-intel
wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.7.4.tar.gz
wget https://bitbucket.org/petsc/petsc4py/downloads/petsc4py-3.7.0.tar.gz
pip install --user --upgrade cython (not sure cython is required if
not in dev mode)
cd /home1/caparmor/aponte/petsc/petsc-3.7.4
./configure PETSC_ARCH=linux-gnu-intel --with-cc=mpiicc
--with-fc=mpiifort
--with-blas-lapack-dir=/appli/intel/Compiler/11.1/073/mkl
--with-64-bit-indices
--download-petsc4py=/home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz
But the latter fails with the following message (which I do not
understand as petsc4py-3.7.0.tar.gz is indeed in the right place):
================================================================================
TEST configureLibrary from
config.packages.petsc4py(/home1/caparmor/aponte/petsc/petsc-3.7.4/config/BuildSystem/config/packages/petsc4py.py:82)
TESTING: configureLibrary from
config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:82)
Looking for PETSC4PY at git.petsc4py, hg.petsc4py or
a directory starting with petsc-petsc4py
Could not locate an existing copy of PETSC4PY:
[]
Downloading petsc4py
===============================================================================
Trying to download
file:///home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz for PETSC4PY
===============================================================================
Downloading
file:///home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz to
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages/_d_petsc4py-3.7.0.tar.gz
Extracting
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages/_d_petsc4py-3.7.0.tar.gz
Executing: cd
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages;
chmod -R a+r petsc4py-3.7.0;find petsc4py-3.7.0 -type d -name "*" -exec
chmod a+rx {} \;
Looking for PETSC4PY at git.petsc4py, hg.petsc4py
or a directory starting with petsc-petsc4py
Could not locate an existing copy of PETSC4PY:
['petsc4py-3.7.0']
ERROR: Failed to download PETSC4PY
**** Configure header /tmp/petsc-ViI4NW/confdefs.h ****
any ideas for this one?
thanks
aurelien
Le 17/12/2016 à 20:19, Barry Smith a écrit :
> Looks like --install-option= are options for pip not the underlying package.
>
> Lisandro, how does one do what seems to be a simple request?
>
>
>> On Dec 17, 2016, at 9:00 AM, Aurelien Ponte <aurelien.ponte at ifremer.fr> wrote:
>>
>> Hi all,
>>
>> I am trying to install petsc4py and petsc with the --with-64-bit-indices option.
>>
>> I followed the pip install described on the petsc4py bitbucket with some slight modifications:
>>
>> module load python/2.7.10_gnu-4.9.2
>> wget https://bootstrap.pypa.io/get-pip.py
>> python get-pip.py --user
>> setenv MPICC mpiicc
>> pip install --user --upgrade mpi4py
>> pip install --user --upgrade numpy
>> pip install --user petsc petsc4py --install-option="--with-64-bit-indices"
>>
>> but I do get the error copied below.
>>
>> Any ideas on what I could do?
>>
>> Should I try to use a different method of install?
>>
>> thanks
>>
>> aurelien
>>
>>
>>
>>
>> service7>479% pip install --user petsc petsc4py --install-option="--with-64-bit-indices"
>> /home1/caparmor/aponte/.local/lib/python2.7/site-packages/pip/commands/install.py:194: UserWarning: Disabling all use of wheels due to the use of --build-options / --global-options / --install-options.
>> cmdoptions.check_install_build_global(options)
>> Collecting petsc
>> Downloading petsc-3.7.2.1.tar.gz (8.7MB)
>> 100% |################################| 8.7MB 116kB/s
>> Collecting petsc4py
>> Downloading petsc4py-3.7.0.tar.gz (1.7MB)
>> 100% |################################| 1.7MB 415kB/s
>> Requirement already satisfied: numpy in /home1/caparmor/aponte/.local/lib/python2.7/site-packages (from petsc4py)
>> Skipping bdist_wheel for petsc, due to binaries being disabled for it.
>> Skipping bdist_wheel for petsc4py, due to binaries being disabled for it.
>> Installing collected packages: petsc, petsc4py
>> Running setup.py install for petsc ... error
>> Complete output from command /appli/python/2.7.10_gcc-4.9.2/python-2.7.10/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3C49gO/petsc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-iuRtIV-record/install-record.txt --single-version-externally-managed --compile --with-64-bit-indices --user --prefix=:
>> usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
>> or: -c --help [cmd1 cmd2 ...]
>> or: -c --help-commands
>> or: -c cmd --help
>>
>> error: option --with-64-bit-indices not recognized
>>
>> ----------------------------------------
>> Command "/appli/python/2.7.10_gcc-4.9.2/python-2.7.10/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3C49gO/petsc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-iuRtIV-record/install-record.txt --single-version-externally-managed --compile --with-64-bit-indices --user --prefix=" failed with error code 1 in /tmp/pip-build-3C49gO/petsc/
>>
>>
>> --
>> Aurélien Ponte
>> Tel: (+33) 2 98 22 40 73
>> Fax: (+33) 2 98 22 44 96
>> UMR 6523, IFREMER
>> ZI de la Pointe du Diable
>> CS 10070
>> 29280 Plouzané
>>
--
Aurélien Ponte
Tel: (+33) 2 98 22 40 73
Fax: (+33) 2 98 22 44 96
UMR 6523, IFREMER
ZI de la Pointe du Diable
CS 10070
29280 Plouzané
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