[petsc-users] Error configuring PETSc with SUNDIALS (to solve stiff PDE)
namu patel
namu.patel7 at gmail.com
Sun Nov 29 11:42:11 CST 2015
Hello All,
I was trying to configure PETSc with SUNDIALS so that I may use PVODE to
solve a stiff hyperbolic PDE of the form
A(x) u_tt = K [B(x) u_x - F(x, u, u_x, t)]_x , t > 0, 0 < x < L ,
u_x(0, t) = u_x(L, t) = 0 ,
u(x, 0) = u_t(x, 0) = 0 ,
where K >> 1. I was reading around to see what may be a good numerical
implementation for such a problem and it can be tricky here because the
stiffness is both in the linear part and the nonlinear forcing term.
I want to try PVODE availble in the SUNDIALS package. When I try to
configure PETSc with SUNDIALS, I get the message:
Downloaded sundials could not be used. Please check install in
/Users/namupatel/Softwares/PETSc/3.6.2/linux-dbg
*******************************************************************************
File "./config/configure.py", line 363, in petsc_configure
framework.configure(out = sys.stdout)
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/framework.py",
line 1081, in configure
self.processChildren()
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/framework.py",
line 1070, in processChildren
self.serialEvaluation(self.childGraph)
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/framework.py",
line 1051, in serialEvaluation
child.configure()
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/package.py",
line 677, in configure
self.executeTest(self.configureLibrary)
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/base.py",
line 126, in executeTest
ret = test(*args,**kargs)
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/package.py",
line 592, in configureLibrary
for location, directory, lib, incl in self.generateGuesses():
File
"/Users/namupatel/Softwares/PETSc/3.6.2/config/BuildSystem/config/package.py",
line 332, in generateGuesses
raise RuntimeError('Downloaded '+self.package+' could not be used.
Please check install in '+d+'\n')
Two questions:
1. How can I resolve the above error?
2. Are there any recommendations to solving the stiff PDE stated above so
that I can experiment to see what may be an efficient implementation?
Thank you,
Namu
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