[petsc-users] [0]PETSC ERROR: Zero pivot in LU factorization:
Ted Sariyski
tsariysk at craft-tech.com
Sun May 3 13:15:47 CDT 2015
Hi,
I successfully build a version of PETSc with scalar-type=complex. A
version with the only change of scalar-type=real, builds, but the test
fails. What do I miss here?
Thanks,
--
Ted
BUILD:
--------
./configure \
PETSC_DIR=${PETSC_DIST_DIR} PETSC_ARCH=${PETSC_ARCH} \
--prefix=${PETSC_INSTALL_DIR}/${PETSC_ARCH} \
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 \
--CFLAGS=-O \
--with-x \
--with-precision=double \
--with-scalar-type=${SCALAR_TYPE} \
--with-clanguage=c++ \
--with-debugger=gdb \
--with-debugging \
--with-fortran-datatypes=1 \
--with-cgns-dir=${PKGSDIR}/cgns \
--with-blas-lapack-dir=${PETSC_DIST_DIR}/${PETSC_ARCH} \
--with-hdf5-dir=${PETSC_DIST_DIR}/${PETSC_ARCH} \
--download-metis=yes \
--download-parmetis=yes \
--download-hypre=yes \ <------ this is
not included in the complex build
--with-valgrind=1
TEST
---------------------------------
-bash-3.2$ make
PETSC_DIR=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg
PETSC_ARCH="" test
Running test examples to verify correct installation
Using PETSC_DIR=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg
and PETSC_ARCH=
*******************Error detected during compile or
link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials ex19
*********************************************************************************
*********************W-a-r-n-i-n-g*************************
Your PETSC_DIR may not match the directory you are in
PETSC_DIR /home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg Current
directory
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials
Ignore this if you are running make test
******************************************************
mpicxx -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing
-Wno-unknown-pragmas -g -O0 -fPIC
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/cgns/include -I/opt/mpich-3.1.4/include
`pwd`/ex19.c
mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
-g -O0 -o ex19 ex19.o
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib -lpetsc
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib -lHYPRE
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg -llapack -lblas
-lparmetis -lmetis -lX11 -lpthread -lssl -lcrypto
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/cgns/lib
-L/home/tsariysk/MFEMv3/pkgs/cgns/lib -lcgns
-Wl,-rpath,/opt/mpich-3.1.4/lib -L/opt/mpich-3.1.4/lib
-Wl,-rpath,/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-L/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-Wl,-rpath,/opt/gcc/4.7.1/lib64 -L/opt/gcc/4.7.1/lib64
-Wl,-rpath,/opt/gcc/4.7.1/lib -L/opt/gcc/4.7.1/lib -lmpifort -lgfortran
-lm -lgfortran -lm -lmpicxx -lstdc++ -Wl,-rpath,/opt/mpich-3.1.4/lib
-L/opt/mpich-3.1.4/lib
-Wl,-rpath,/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-L/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-Wl,-rpath,/opt/gcc/4.7.1/lib64 -L/opt/gcc/4.7.1/lib64
-Wl,-rpath,/opt/gcc/4.7.1/lib -L/opt/gcc/4.7.1/lib -ldl
-Wl,-rpath,/opt/mpich-3.1.4/lib -lmpi -lgcc_s -ldl
/usr/bin/ld: warning: libgfortran.so.1, needed by
/usr/lib/../lib64/liblapack.so, may conflict with libgfortran.so.3
/usr/bin/ld: warning: libgfortran.so.1, needed by
/usr/lib/../lib64/liblapack.so, may conflict with libgfortran.so.3
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Zero pivot in LU factorization:
http://www.mcs.anl.gov/petsc/documentation/faq.html#ZeroPivot
[0]PETSC ERROR: Zero pivot, row 2
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.5.3, Jan, 31, 2015
[0]PETSC ERROR: ./ex19 on a petsc-complex-dbg named odin.craft-tech.com
by tsariysk Sun May 3 14:02:08 2015
[0]PETSC ERROR: Configure options
PETSC_DIR=/home/tsariysk/MFEMv3/tars/petsc-3.5.3
PETSC_ARCH=petsc-complex-dbg
--prefix=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-complex-dbg
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --CFLAGS=-O --with-x
--with-precision=double --with-scalar-type=complex --with-clanguage=c++
--with-debugger=gdb --with-debugging --with-fortran-datatypes=1
--with-blas-lapack-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-hdf5-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-metis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg --with-parmetis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-cgns-dir=/home/tsariysk/MFEMv3/pkgs/cgns --with-valgrind=1
[0]PETSC ERROR: #1 PetscKernel_A_gets_inverse_A_4() line 48 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/baij/seq/dgefa4.c
[0]PETSC ERROR: #2 MatSOR_SeqAIJ_Inode() line 2812 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/aij/seq/inode.c
[0]PETSC ERROR: #3 MatSOR() line 3643 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/interface/matrix.c
[0]PETSC ERROR: #4 PCApply_SOR() line 35 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/sor/sor.c
[0]PETSC ERROR: #5 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: #6 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
[0]PETSC ERROR: #7 KSPInitialResidual() line 56 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itres.c
[0]PETSC ERROR: #8 KSPSolve_GMRES() line 234 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/gmres.c
[0]PETSC ERROR: #9 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #10 KSPSolve_Chebyshev() line 368 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/cheby/cheby.c
[0]PETSC ERROR: #11 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #12 PCMGMCycle_Private() line 19 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: #13 PCApply_MG() line 337 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: #14 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: #15 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
[0]PETSC ERROR: #16 KSPFGMRESCycle() line 168 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[0]PETSC ERROR: #17 KSPSolve_FGMRES() line 295 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[0]PETSC ERROR: #18 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #19 SNESSolve_NEWTONLS() line 232 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/impls/ls/ls.c
[0]PETSC ERROR: #20 SNESSolve() line 3743 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/interface/snes.c
[0]PETSC ERROR: #21 main() line 158 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials/ex19.c
[0]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
application called MPI_Abort(MPI_COMM_WORLD, 71) - process 0
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 24633 RUNNING AT odin.craft-tech.com
= EXIT CODE: 71
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
processes
See http://www.mcs.anl.gov/petsc/documentation/faq.html
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Zero pivot in LU factorization:
http://www.mcs.anl.gov/petsc/documentation/faq.html#ZeroPivot
[0]PETSC ERROR: Zero pivot, row 2
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
for trouble shooting.
[0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[1]PETSC ERROR: Zero pivot in LU factorization:
http://www.mcs.anl.gov/petsc/documentation/faq.html#ZeroPivot
[1]PETSC ERROR: Zero pivot, row 2
[1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
for trouble shooting.
[1]PETSC ERROR: Petsc Release Version 3.5.3, Jan, 31, 2015
[1]PETSC ERROR: ./ex19 on a petsc-complex-dbg named odin.craft-tech.com
by tsariysk Sun May 3 14:02:08 2015
[1]PETSC ERROR: Configure options
PETSC_DIR=/home/tsariysk/MFEMv3/tars/petsc-3.5.3
PETSC_ARCH=petsc-complex-dbg
--prefix=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-complex-dbg
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --CFLAGS=-O --with-x
--with-precision=double --with-scalar-type=complex --with-clanguage=c++
--with-debugger=gdb --with-debugging --with-fortran-datatypes=1
--with-blas-lapack-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-hdf5-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-metis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg --with-parmetis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-cgns-dir=/home/tsariysk/MFEMv3/pkgs/cgns --with-valgrind=1
[1]PETSC ERROR: #1 PetscKernel_A_gets_inverse_A_4() line 48 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/baij/seq/dgefa4.c
[1]PETSC ERROR: #2 MatSOR_SeqAIJ_Inode() line 2812 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/aij/seq/inode.c
[1]PETSC ERROR: #3 MatSOR_MPIAIJ() line 1483 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/aij/mpi/mpiaij.c
Petsc Release Version 3.5.3, Jan, 31, 2015
[0]PETSC ERROR: ./ex19 on a petsc-complex-dbg named odin.craft-tech.com
by tsariysk Sun May 3 14:02:08 2015
[0]PETSC ERROR: Configure options
PETSC_DIR=/home/tsariysk/MFEMv3/tars/petsc-3.5.3
PETSC_ARCH=petsc-complex-dbg
--prefix=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-complex-dbg
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --CFLAGS=-O --with-x
--with-precision=double --with-scalar-type=complex --with-clanguage=c++
--with-debugger=gdb --with-debugging --with-fortran-datatypes=1
--with-blas-lapack-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-hdf5-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-metis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg --with-parmetis-dir=/home/tsariysk/MFEMv3/tars/petsc-3.5.3/petsc-complex-dbg
--with-cgns-dir=/home/tsariysk/MFEMv3/pkgs/cgns --with-valgrind=1
[0]PETSC ERROR: #1 PetscKernel_A_gets_inverse_A_4() line 48 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/baij/seq/dgefa4.c
[0]PETSC ERROR: #2 MatSOR_SeqAIJ_Inode() line 2812 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/aij/seq/inode.c
[0]PETSC ERROR: #3 MatSOR_MPIAIJ() line 1483 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/impls/aij/mpi/mpiaij.c
[1]PETSC ERROR: #4 MatSOR() line 3643 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/interface/matrix.c
[1]PETSC ERROR: [0]PETSC ERROR: #4 MatSOR() line 3643 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/mat/interface/matrix.c
#5 PCApply_SOR() line 35 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/sor/sor.c
[1]PETSC ERROR: [0]PETSC ERROR: #5 PCApply_SOR() line 35 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/sor/sor.c
[0]PETSC ERROR: #6 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
#6 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
[1]PETSC ERROR: [0]PETSC ERROR: #7 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
#7 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
[0]PETSC ERROR: #8 KSPInitialResidual() line 56 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itres.c
[1]PETSC ERROR: #8 KSPInitialResidual() line 56 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itres.c
[0]PETSC ERROR: #9 KSPSolve_GMRES() line 234 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/gmres.c
[0]PETSC ERROR: [1]PETSC ERROR: #9 KSPSolve_GMRES() line 234 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/gmres.c
#10 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #11 KSPSolve_Chebyshev() line 368 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/cheby/cheby.c
[0]PETSC ERROR: [1]PETSC ERROR: #10 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
#12 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: [1]PETSC ERROR: #11 KSPSolve_Chebyshev() line 368 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/cheby/cheby.c
#13 PCMGMCycle_Private() line 19 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: #14 PCApply_MG() line 337 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: [1]PETSC ERROR: #12 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
#15 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: #16 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
[1]PETSC ERROR: #13 PCMGMCycle_Private() line 19 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: #17 KSPFGMRESCycle() line 168 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[0]PETSC ERROR: #18 KSPSolve_FGMRES() line 295 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[1]PETSC ERROR: #14 PCApply_MG() line 337 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/impls/mg/mg.c
[0]PETSC ERROR: #19 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #20 SNESSolve_NEWTONLS() line 232 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/impls/ls/ls.c
[1]PETSC ERROR: #15 PCApply() line 440 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: #21 SNESSolve() line 3743 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/interface/snes.c
[1]PETSC ERROR: #16 KSP_PCApply() line 230 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/include/petsc-private/kspimpl.h
[0]PETSC ERROR: #22 main() line 158 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials/ex19.c
[0]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
[1]PETSC ERROR: #17 KSPFGMRESCycle() line 168 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[1]PETSC ERROR: #18 KSPSolve_FGMRES() line 295 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[1]PETSC ERROR: #19 KSPSolve() line 460 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/ksp/ksp/interface/itfunc.c
application called MPI_Abort(MPI_COMM_WORLD, 71) - process 0
[1]PETSC ERROR: #20 SNESSolve_NEWTONLS() line 232 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/impls/ls/ls.c
[1]PETSC ERROR: #21 SNESSolve() line 3743 in
/work/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/interface/snes.c
[1]PETSC ERROR: #22 main() line 158 in
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials/ex19.c
[1]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
application called MPI_Abort(MPI_COMM_WORLD, 71) - process 1
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 24638 RUNNING AT odin.craft-tech.com
= EXIT CODE: 71
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/home/tsariysk/MFEMv3/tars/petsc-3.5.3/src/snes/examples/tutorials ex5f90t
*********************************************************
mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0
-Wno-unused-dummy-argument -g -O0
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/include
-I/home/tsariysk/MFEMv3/pkgs/cgns/include -I/opt/mpich-3.1.4/include
-o ex5f90t.o ex5f90t.F
mpif90 -fPIC -Wall -Wno-unused-variable -ffree-line-length-0
-Wno-unused-dummy-argument -g -O0 -o ex5f90t ex5f90t.o
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib -lpetsc
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib -lHYPRE
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg
-L/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg -llapack -lblas
-lparmetis -lmetis -lX11 -lpthread -lssl -lcrypto
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg/lib
-lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5
-Wl,-rpath,/home/tsariysk/MFEMv3/pkgs/cgns/lib
-L/home/tsariysk/MFEMv3/pkgs/cgns/lib -lcgns
-Wl,-rpath,/opt/mpich-3.1.4/lib -L/opt/mpich-3.1.4/lib
-Wl,-rpath,/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-L/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-Wl,-rpath,/opt/gcc/4.7.1/lib64 -L/opt/gcc/4.7.1/lib64
-Wl,-rpath,/opt/gcc/4.7.1/lib -L/opt/gcc/4.7.1/lib -lmpifort -lgfortran
-lm -lgfortran -lm -lmpicxx -lstdc++ -Wl,-rpath,/opt/mpich-3.1.4/lib
-L/opt/mpich-3.1.4/lib
-Wl,-rpath,/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-L/opt/gcc/4.7.1/lib/gcc/x86_64-unknown-linux-gnu/4.7.1
-Wl,-rpath,/opt/gcc/4.7.1/lib64 -L/opt/gcc/4.7.1/lib64
-Wl,-rpath,/opt/gcc/4.7.1/lib -L/opt/gcc/4.7.1/lib -ldl
-Wl,-rpath,/opt/mpich-3.1.4/lib -lmpi -lgcc_s -ldl
/usr/bin/ld: warning: libgfortran.so.1, needed by
/usr/lib/../lib64/liblapack.so, may conflict with libgfortran.so.3
/usr/bin/ld: warning: libgfortran.so.1, needed by
/usr/lib/../lib64/liblapack.so, may conflict with libgfortran.so.3
/usr/bin/ld: warning: libgfortran.so.1, needed by
/usr/lib/../lib64/liblapack.so, may conflict with libgfortran.so.3
/bin/rm -f ex5f90t.o
Possible error running Fortran example
src/snes/examples/tutorials/ex5f90t with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
Number of SNES iterations = 0
Completed test examples
=========================================
Now to evaluate the computer systems you plan use - do:
make PETSC_DIR=/home/tsariysk/MFEMv3/pkgs/petsc-3.5.3/petsc-real-dbg
PETSC_ARCH= streams NPMAX=<number of MPI processes you intend to use>
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