[petsc-users] PETSC_NULL_OBJECT gets corrupt after call to MatNestGetISs in fortran
Klaij, Christiaan
C.Klaij at marin.nl
Fri May 1 03:06:19 CDT 2015
Satish,
Today, I tried again and now I also get:
0
0
Sorry, I must have done something wrong earlier... Thanks again,
Chris
________________________________________
From: Satish Balay <balay at mcs.anl.gov>
Sent: Thursday, April 30, 2015 9:54 PM
To: Klaij, Christiaan
Cc: petsc-users
Subject: Re: [petsc-users] PETSC_NULL_OBJECT gets corrupt after call to MatNestGetISs in fortran
Hm - it works for me with the test code you sent..
<petsc-3.5.3 before patch>
balay at asterix /home/balay/download-pine/x
$ ./ex1f
0
40357424
<petsc-3.5.3 after patch>
balay at asterix /home/balay/download-pine/x
$ ./ex1f
0
0
balay at asterix /home/balay/download-pine/x
Satish
$ On Thu, 30 Apr 2015, Klaij, Christiaan wrote:
> Satish,
>
> Thanks for the files! I've copied them to the correct location in my petsc-3.5.3 dir and rebuild the whole thing from scratch but I still get the same memory corruption for the example below...
>
> Chris
> ________________________________________
> From: Satish Balay <balay at mcs.anl.gov>
> Sent: Friday, April 24, 2015 10:54 PM
> To: Klaij, Christiaan
> Cc: petsc-users at mcs.anl.gov
> Subject: Re: [petsc-users] PETSC_NULL_OBJECT gets corrupt after call to MatNestGetISs in fortran
>
> Sorry for dropping the ball on this issue. I pushed the following fix to maint branch.
>
> https://bitbucket.org/petsc/petsc/commits/3a4d7b9a6c83003720b45dc0635fc32ea52a4309
>
> To use this change with petsc-3.5.3 - you can drop in the attached replacement files at:
>
> src/mat/impls/nest/ftn-custom/zmatnestf.c
> src/mat/impls/nest/ftn-auto/matnestf.c
>
> Satish
>
> On Fri, 24 Apr 2015, Klaij, Christiaan wrote:
>
> > Barry, Satish
> >
> > Any news on this issue?
> >
> > Chris
> >
> > > On Feb 12, 2015, at 07:13:08 CST, Smith, Barry <bsmith at mcs.anl.gov> wrote:
> > >
> > > Thanks for reporting this. Currently the Fortran stub for this function is generated automatically which means it does not have the logic for handling a PETSC_NULL_OBJECT argument.
> > >
> > > Satish, could you please see if you can add a custom fortran stub for this function in maint?
> > >
> > > Thanks
> > >
> > > Barry
> > >
> > > > On Feb 12, 2015, at 3:02 AM, Klaij, Christiaan <C.Klaij at marin.nl> wrote:
> > > >
> > > > Using petsc-3.5.3, I noticed that PETSC_NULL_OBJECT gets corrupt after calling MatNestGetISs in fortran. Here's a small example:
> > > >
> > > > $ cat fieldsplittry2.F90
> > > > program fieldsplittry2
> > > >
> > > > use petscksp
> > > > implicit none
> > > > #include <finclude/petsckspdef.h>
> > > >
> > > > PetscErrorCode :: ierr
> > > > PetscInt :: size,i,j,start,end,n=4,numsplit=1
> > > > PetscScalar :: zero=0.0,one=1.0
> > > > Vec :: diag3,x,b
> > > > Mat :: A,subA(4),myS
> > > > PC :: pc,subpc(2)
> > > > KSP :: ksp,subksp(2)
> > > > IS :: isg(2)
> > > >
> > > > call PetscInitialize(PETSC_NULL_CHARACTER,ierr); CHKERRQ(ierr)
> > > > call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr); CHKERRQ(ierr);
> > > >
> > > > ! vectors
> > > > call VecCreateMPI(MPI_COMM_WORLD,3*n,PETSC_DECIDE,diag3,ierr); CHKERRQ(ierr)
> > > > call VecSet(diag3,one,ierr); CHKERRQ(ierr)
> > > >
> > > > call VecCreateMPI(MPI_COMM_WORLD,4*n,PETSC_DECIDE,x,ierr); CHKERRQ(ierr)
> > > > call VecSet(x,zero,ierr); CHKERRQ(ierr)
> > > >
> > > > call VecDuplicate(x,b,ierr); CHKERRQ(ierr)
> > > > call VecSet(b,one,ierr); CHKERRQ(ierr)
> > > >
> > > > ! matrix a00
> > > > call MatCreateAIJ(MPI_COMM_WORLD,3*n,3*n,PETSC_DECIDE,PETSC_DECIDE,1,PETSC_NULL_INTEGER,0,PETSC_NULL_INTEGER,subA(1),ierr);CHKERRQ(ierr)
> > > > call MatDiagonalSet(subA(1),diag3,INSERT_VALUES,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyBegin(subA(1),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyEnd(subA(1),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > >
> > > > ! matrix a01
> > > > call MatCreateAIJ(MPI_COMM_WORLD,3*n,n,PETSC_DECIDE,PETSC_DECIDE,1,PETSC_NULL_INTEGER,1,PETSC_NULL_INTEGER,subA(2),ierr);CHKERRQ(ierr)
> > > > call MatGetOwnershipRange(subA(2),start,end,ierr);CHKERRQ(ierr);
> > > > do i=start,end-1
> > > > j=mod(i,size*n)
> > > > call MatSetValue(subA(2),i,j,one,INSERT_VALUES,ierr);CHKERRQ(ierr)
> > > > end do
> > > > call MatAssemblyBegin(subA(2),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyEnd(subA(2),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > >
> > > > ! matrix a10
> > > > call MatTranspose(subA(2),MAT_INITIAL_MATRIX,subA(3),ierr);CHKERRQ(ierr)
> > > >
> > > > ! matrix a11 (empty)
> > > > call MatCreateAIJ(MPI_COMM_WORLD,n,n,PETSC_DECIDE,PETSC_DECIDE,0,PETSC_NULL_INTEGER,0,PETSC_NULL_INTEGER,subA(4),ierr);CHKERRQ(ierr)
> > > > call MatAssemblyBegin(subA(4),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyEnd(subA(4),MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > >
> > > > ! nested mat [a00,a01;a10,a11]
> > > > call MatCreateNest(MPI_COMM_WORLD,2,PETSC_NULL_OBJECT,2,PETSC_NULL_OBJECT,subA,A,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > > call MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY,ierr);CHKERRQ(ierr)
> > > > print *, PETSC_NULL_OBJECT
> > > > call MatNestGetISs(A,isg,PETSC_NULL_OBJECT,ierr);CHKERRQ(ierr);
> > > > print *, PETSC_NULL_OBJECT
> > > >
> > > > call PetscFinalize(ierr)
> > > >
> > > > end program fieldsplittry2
> > > > $ ./fieldsplittry2
> > > > 0
> > > > 39367824
> > > > $
> > > >
> > > >
> > > > dr. ir. Christiaan Klaij
> > > > CFD Researcher
> > > > Research & Development
> > > > E mailto:C.Klaij at marin.nl
> > > > T +31 317 49 33 44
> > > >
> > > >
> > > > MARIN
> > > > 2, Haagsteeg, P.O. Box 28, 6700 AA Wageningen, The Netherlands
> > > > T +31 317 49 39 11, F +31 317 49 32 45, I www.marin.nl
> > > >
> >
> >
> > dr. ir. Christiaan Klaij
> > CFD Researcher
> > Research & Development
> > E mailto:C.Klaij at marin.nl
> > T +31 317 49 33 44
> >
> >
> > MARIN
> > 2, Haagsteeg, P.O. Box 28, 6700 AA Wageningen, The Netherlands
> > T +31 317 49 39 11, F +31 317 49 32 45, I www.marin.nl
> >
> >
>
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