[petsc-users] make check error
Manav Bhatia
bhatiamanav at gmail.com
Wed Mar 11 13:20:54 CDT 2015
One a different machine, but with same version of code, I am getting the following error. There is some complaint about unable to open /dev/infiniband/rdma_cm.
Any pointers would be greatly appreciated.
Thanks,
Manav
shadow-login[238] bhatia$ make check
Running test examples to verify correct installation
Using PETSC_DIR=/work/bhatia/codes/shadow/petsc/petsc-3.5.3 and PETSC_ARCH=arch-linux2-cxx-opt
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
librdmacm: Warning: couldn't read ABI version.
librdmacm: Warning: assuming: 4
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
--------------------------------------------------------------------------
WARNING: There are more than one active ports on host 'shadow-login', but the
default subnet GID prefix was detected on more than one of these
ports. If these ports are connected to different physical IB
networks, this configuration will fail in Open MPI. This version of
Open MPI requires that every physically separate IB subnet that is
used between connected MPI processes must have different subnet ID
values.
Please see this FAQ entry for more details:
http://www.open-mpi.org/faq/?category=openfabrics#ofa-default-subnet-gid
NOTE: You can turn off this warning by setting the MCA parameter
btl_openib_warn_default_gid_prefix to 0.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
No OpenFabrics connection schemes reported that they were able to be
used on a specific port. As such, the openib BTL (OpenFabrics
support) will be disabled for this port.
Local host: shadow-login
Local device: mlx4_1
Local port: 1
CPCs attempted: udcm
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: It appears that your OpenFabrics subsystem is configured to only
allow registering part of your physical memory. This can cause MPI jobs to
run with erratic performance, hang, and/or crash.
This may be caused by your OpenFabrics vendor limiting the amount of
physical memory that can be registered. You should investigate the
relevant Linux kernel module parameters that control how much physical
memory can be registered, and increase them to allow registering all
physical memory on your machine.
See this Open MPI FAQ item for more information on these Linux kernel module
parameters:
http://www.open-mpi.org/faq/?category=openfabrics#ib-locked-pages
Local host: shadow-login
Registerable memory: 24576 MiB
Total memory: 65457 MiB
Your MPI job will continue, but may be behave poorly and/or hang.
--------------------------------------------------------------------------
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes
See http://www.mcs.anl.gov/petsc/documentation/faq.html
librdmacm: Warning: couldn't read ABI version.
librdmacm: Warning: assuming: 4
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
librdmacm: Warning: couldn't read ABI version.
librdmacm: Warning: assuming: 4
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
--------------------------------------------------------------------------
WARNING: There are more than one active ports on host 'shadow-login', but the
default subnet GID prefix was detected on more than one of these
ports. If these ports are connected to different physical IB
networks, this configuration will fail in Open MPI. This version of
Open MPI requires that every physically separate IB subnet that is
used between connected MPI processes must have different subnet ID
values.
Please see this FAQ entry for more details:
http://www.open-mpi.org/faq/?category=openfabrics#ofa-default-subnet-gid
NOTE: You can turn off this warning by setting the MCA parameter
btl_openib_warn_default_gid_prefix to 0.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
No OpenFabrics connection schemes reported that they were able to be
used on a specific port. As such, the openib BTL (OpenFabrics
support) will be disabled for this port.
Local host: shadow-login
Local device: mlx4_1
Local port: 1
CPCs attempted: udcm
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: It appears that your OpenFabrics subsystem is configured to only
allow registering part of your physical memory. This can cause MPI jobs to
run with erratic performance, hang, and/or crash.
This may be caused by your OpenFabrics vendor limiting the amount of
physical memory that can be registered. You should investigate the
relevant Linux kernel module parameters that control how much physical
memory can be registered, and increase them to allow registering all
physical memory on your machine.
See this Open MPI FAQ item for more information on these Linux kernel module
parameters:
http://www.open-mpi.org/faq/?category=openfabrics#ib-locked-pages
Local host: shadow-login
Registerable memory: 24576 MiB
Total memory: 65457 MiB
Your MPI job will continue, but may be behave poorly and/or hang.
--------------------------------------------------------------------------
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
--------------------------------------------------------------------------
mpirun noticed that process rank 1 with PID 196567 on node shadow-login exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
[shadow-login:196564] 1 more process has sent help message help-mpi-btl-openib.txt / default subnet prefix
[shadow-login:196564] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[shadow-login:196564] 1 more process has sent help message help-mpi-btl-openib-cpc-base.txt / no cpcs for port
[shadow-login:196564] 1 more process has sent help message help-mpi-btl-openib.txt / reg mem limit low
Possible error running Fortran example src/snes/examples/tutorials/ex5f with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
librdmacm: Warning: couldn't read ABI version.
librdmacm: Warning: assuming: 4
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
librdmacm: Fatal: unable to open /dev/infiniband/rdma_cm
--------------------------------------------------------------------------
WARNING: There are more than one active ports on host 'shadow-login', but the
default subnet GID prefix was detected on more than one of these
ports. If these ports are connected to different physical IB
networks, this configuration will fail in Open MPI. This version of
Open MPI requires that every physically separate IB subnet that is
used between connected MPI processes must have different subnet ID
values.
Please see this FAQ entry for more details:
http://www.open-mpi.org/faq/?category=openfabrics#ofa-default-subnet-gid
NOTE: You can turn off this warning by setting the MCA parameter
btl_openib_warn_default_gid_prefix to 0.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
No OpenFabrics connection schemes reported that they were able to be
used on a specific port. As such, the openib BTL (OpenFabrics
support) will be disabled for this port.
Local host: shadow-login
Local device: mlx4_1
Local port: 1
CPCs attempted: udcm
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: It appears that your OpenFabrics subsystem is configured to only
allow registering part of your physical memory. This can cause MPI jobs to
run with erratic performance, hang, and/or crash.
This may be caused by your OpenFabrics vendor limiting the amount of
physical memory that can be registered. You should investigate the
relevant Linux kernel module parameters that control how much physical
memory can be registered, and increase them to allow registering all
physical memory on your machine.
See this Open MPI FAQ item for more information on these Linux kernel module
parameters:
http://www.open-mpi.org/faq/?category=openfabrics#ib-locked-pages
Local host: shadow-login
Registerable memory: 24576 MiB
Total memory: 65457 MiB
Your MPI job will continue, but may be behave poorly and/or hang.
--------------------------------------------------------------------------
Number of SNES iterations = 4
Completed test examples
=========================================
Now to evaluate the computer systems you plan use - do:
make PETSC_DIR=/work/bhatia/codes/shadow/petsc/petsc-3.5.3 PETSC_ARCH=arch-linux2-cxx-opt streams NPMAX=<number of MPI processes you intend to use>
shadow-login[239] bhatia$
> On Mar 11, 2015, at 1:12 PM, Manav Bhatia <bhatiamanav at gmail.com> wrote:
>
> Greetings!
>
> I have come across the following error while running make check. I am not sure where to begin to sort this out. Any pointers would be greatly appreciated.
>
> Talon-login[114] bhatia$ make check
> gmake[1]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3'
> Running test examples to verify correct installation
> Using PETSC_DIR=/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3 and PETSC_ARCH=arch-linux2-cxx-opt
> gmake[2]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html <http://www.mcs.anl.gov/petsc/documentation/faq.html>
> /cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials ex19
> *********************************************************************************
> gmake[3]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[4]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[4]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> mpicxx -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/include -I/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/include -I/usr/local/openssl/x86_64/include -I/usr/local/mpi/x86_64/openmpi/include -I/usr/local/mpi/x86_64/openmpi-1.4.2/include `pwd`/ex19.c
> mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -o ex19 ex19.o -L/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/lib -lpetsc -Wl,-rpath,/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lsuperlu_4.3 -lsuperlu_dist_3.3 -Wl,-rpath,/cavs/projects/sams/codes/raptor/lapack -L/cavs/projects/sams/codes/raptor/lapack -llapack -Wl,-rpath,/cavs/projects/sams/codes/raptor/blas -L/cavs/projects/sams/codes/raptor/blas -lblas -lparmetis -lmetis -lpthread -Wl,-rpath,/usr/local/openssl/x86_64/lib -L/usr/local/openssl/x86_64/lib -lssl -lcrypto -Wl,-rpath,/usr/local/mpi/x86_64/openmpi/lib -L/usr/local/mpi/x86_64/openmpi/lib -lmpi_cxx -lmpi -L/usr/local/mpi/x86_64/openmpi-1.4.2/lib -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc/x86_64-unknown-linux-gnu/4.8.3 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib64 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -L/usr/local/mpi/x86_64/openmpi-1.4.2/lib -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc/x86_64-unknown-linux-gnu/4.8.3 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib64 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /bin/rm -f ex19.o
> gmake[3]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
> See http://www.mcs.anl.gov/petsc/documentation/faq.html <http://www.mcs.anl.gov/petsc/documentation/faq.html>
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
> libibverbs: Warning: no userspace device-specific driver found for /sys/class/infiniband_verbs/uverbs0
> CMA: unable to open /dev/infiniband/rdma_cm
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
> [Talon-login:18281] *** Process received signal ***
> [Talon-login:18281] Signal: Segmentation fault (11)
> [Talon-login:18281] Signal code: Address not mapped (1)
> [Talon-login:18281] Failing at address: 0x100002990
> [Talon-login:18281] [ 0] /lib64/libpthread.so.0 [0x2b8e9cbc6c00]
> [Talon-login:18281] [ 1] /usr/ofed/lib64/libibverbs.so.1 [0x2b8e9fcad4ce]
> [Talon-login:18281] [ 2] /usr/ofed/lib64/libibverbs.so.1(ibv_get_device_list+0x9e) [0x2b8e9fcac49e]
> [Talon-login:18281] [ 3] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_btl_openib.so [0x2b8e9fdbe15a]
> [Talon-login:18281] [ 4] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_btl_base_select+0x156) [0x2b8e9d223166]
> [Talon-login:18281] [ 5] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_bml_r2.so [0x2b8e9f997821]
> [Talon-login:18281] [ 6] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_bml_base_init+0x72) [0x2b8e9d222972]
> [Talon-login:18281] [ 7] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_pml_ob1.so [0x2b8e9f77fc8f]
> [Talon-login:18281] [ 8] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_pml_base_select+0x383) [0x2b8e9d22c743]
> [Talon-login:18281] [ 9] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0 [0x2b8e9d1f0050]
> [Talon-login:18281] [10] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(PMPI_Init_thread+0xc1) [0x2b8e9d20db41]
> [Talon-login:18281] [11] ./ex19(PetscInitialize+0x1bd) [0x4990fe]
> [Talon-login:18281] [12] ./ex19(main+0x2a) [0x48471e]
> [Talon-login:18281] [13] /lib64/libc.so.6(__libc_start_main+0xf4) [0x2b8e9e331164]
> [Talon-login:18281] [14] ./ex19 [0x482639]
> [Talon-login:18281] *** End of error message ***
> --------------------------------------------------------------------------
> mpirun noticed that process rank 0 with PID 18281 on node Talon-login.HPC.MsState.Edu <http://talon-login.hpc.msstate.edu/> exited on signal 11 (Segmentation fault).
> --------------------------------------------------------------------------
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes
> See http://www.mcs.anl.gov/petsc/documentation/faq.html <http://www.mcs.anl.gov/petsc/documentation/faq.html>
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
> libibverbs: Warning: no userspace device-specific driver found for /sys/class/infiniband_verbs/uverbs0
> CMA: unable to open /dev/infiniband/rdma_cm
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
> [Talon-login:18286] *** Process received signal ***
> [Talon-login:18286] Signal: Segmentation fault (11)
> [Talon-login:18286] Signal code: Address not mapped (1)
> [Talon-login:18286] Failing at address: 0x100002990
> [Talon-login:18286] [ 0] /lib64/libpthread.so.0 [0x2acc0604ec00]
> [Talon-login:18286] [ 1] /usr/ofed/lib64/libibverbs.so.1 [0x2acc091354ce]
> [Talon-login:18286] [ 2] /usr/ofed/lib64/libibverbs.so.1(ibv_get_device_list+0x9e) [0x2acc0913449e]
> [Talon-login:18286] [ 3] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_btl_openib.so [0x2acc0924615a]
> [Talon-login:18286] [ 4] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_btl_base_select+0x156) [0x2acc066ab166]
> [Talon-login:18286] [ 5] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_bml_r2.so [0x2acc08e1f821]
> [Talon-login:18286] [ 6] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_bml_base_init+0x72) [0x2acc066aa972]
> [Talon-login:18286] [ 7] /usr/local/mpi/x86_64/openmpi-1.4.2/lib/openmpi/mca_pml_ob1.so [0x2acc08c07c8f]
> [Talon-login:18286] [ 8] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(mca_pml_base_select+0x383) [0x2acc066b4743]
> [Talon-login:18286] [ 9] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0 [0x2acc06678050]
> [Talon-login:18286] [10] /usr/local/mpi/x86_64/openmpi/lib/libmpi.so.0(PMPI_Init_thread+0xc1) [0x2acc06695b41]
> [Talon-login:18286] [11] ./ex19(PetscInitialize+0x1bd) [0x4990fe]
> [Talon-login:18286] [12] ./ex19(main+0x2a) [0x48471e]
> [Talon-login:18286] [13] /lib64/libc.so.6(__libc_start_main+0xf4) [0x2acc077b9164]
> [Talon-login:18286] [14] ./ex19 [0x482639]
> [Talon-login:18286] *** End of error message ***
> --------------------------------------------------------------------------
> mpirun noticed that process rank 0 with PID 18286 on node Talon-login.HPC.MsState.Edu <http://talon-login.hpc.msstate.edu/> exited on signal 11 (Segmentation fault).
> --------------------------------------------------------------------------
> gmake[3]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[3]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html <http://www.mcs.anl.gov/petsc/documentation/faq.html>
> /cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials ex5f
> *********************************************************
> gmake[3]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> mpif90 -c -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/include -I/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/include -I/usr/local/openssl/x86_64/include -I/usr/local/mpi/x86_64/openmpi/include -I/usr/local/mpi/x86_64/openmpi-1.4.2/include -o ex5f.o ex5f.F
> mpif90 -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -o ex5f ex5f.o -L/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/lib -lpetsc -Wl,-rpath,/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/arch-linux2-cxx-opt/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lsuperlu_4.3 -lsuperlu_dist_3.3 -Wl,-rpath,/cavs/projects/sams/codes/raptor/lapack -L/cavs/projects/sams/codes/raptor/lapack -llapack -Wl,-rpath,/cavs/projects/sams/codes/raptor/blas -L/cavs/projects/sams/codes/raptor/blas -lblas -lparmetis -lmetis -lpthread -Wl,-rpath,/usr/local/openssl/x86_64/lib -L/usr/local/openssl/x86_64/lib -lssl -lcrypto -Wl,-rpath,/usr/local/mpi/x86_64/openmpi/lib -L/usr/local/mpi/x86_64/openmpi/lib -lmpi_cxx -lmpi -L/usr/local/mpi/x86_64/openmpi-1.4.2/lib -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc/x86_64-unknown-linux-gnu/4.8.3 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib64 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -L/usr/local/mpi/x86_64/openmpi-1.4.2/lib -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc/x86_64-unknown-linux-gnu/4.8.3 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib/gcc -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib64 -L/usr/local/server/x86_64-SuSE10/gnu/gcc-4.8.3/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /usr/local/gnu/gcc-4.8.3/binutils/bin/ld: warning: libgfortran.so.1, needed by /usr/local/mpi/x86_64/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3
> /bin/rm -f ex5f.o
> gmake[3]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> Possible error running Fortran example src/snes/examples/tutorials/ex5f with 1 MPI process
> See http://www.mcs.anl.gov/petsc/documentation/faq.html <http://www.mcs.anl.gov/petsc/documentation/faq.html>
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
> libibverbs: Warning: no userspace device-specific driver found for /sys/class/infiniband_verbs/uverbs0
> CMA: unable to open /dev/infiniband/rdma_cm
> libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
> This will severely limit memory registrations.
> libibverbs: Warning: couldn't open config directory '/etc/libibverbs.d'.
>
> Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
>
> Backtrace for this error:
> #0 0x2B6CD4A6F4D7
> #1 0x2B6CD4A6FADE
> #2 0x2B6CD5805E1F
> #3 0x2B6CD716F4CE
> #4 0x2B6CD716E49D
> #5 0x2B6CD7280159
> #6 0x2B6CD46E5165
> #7 0x2B6CD6E59820
> #8 0x2B6CD46E4971
> #9 0x2B6CD6C41C8E
> #10 0x2B6CD46EE742
> #11 0x2B6CD46B204F
> #12 0x2B6CD46CF99F
> #13 0x2B6CD494AA84
> #14 0x489A6D in petscinitialize_
> #15 0x487CEC in MAIN__ at ex5f.F:?
> --------------------------------------------------------------------------
> mpirun noticed that process rank 0 with PID 18354 on node Talon-login.HPC.MsState.Edu <http://talon-login.hpc.msstate.edu/> exited on signal 11 (Segmentation fault).
> --------------------------------------------------------------------------
> gmake[3]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[3]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Entering directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> gmake[2]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3/src/snes/examples/tutorials'
> Completed test examples
> gmake[1]: Leaving directory `/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3'
> =========================================
> Now to evaluate the computer systems you plan use - do:
> make PETSC_DIR=/cavs/projects/sams/codes/raptor/petsc/petsc-3.5.3 PETSC_ARCH=arch-linux2-cxx-opt streams NPMAX=<number of MPI processes you intend to use>
> Talon-login[115] bhatia$
>
>
> Thanks,
> Manav
>
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