[petsc-users] KSP changes for successive solver

Jed Brown jed at jedbrown.org
Wed Jul 29 13:41:20 CDT 2015


Barry Smith <bsmith at mcs.anl.gov> writes:

>    For the default PCMG using PCREDUNDANT on the coarse level with LU 
>
> VecScatterBegin     2356 1.0 1.6390e+01 4.7 0.00e+00 0.0 5.9e+09 1.7e+01 0.0e+00  2  0 98 99  0   2  0 98 99  0     0
> VecScatterEnd       2356 1.0 4.1647e+02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 69  0  0  0  0  69  0  0  0  0     0

433/2356 = 0.18 seconds per scatter.

> so the gathering together of the vector values from all processes to the one process is killing performance (presumably it is just using the "default" VecScatter so sending individual messages to all processes. Terribly slow. If the VecScatter were smart enough to switch to an alltoall here it would actually help an enormous amount).
>
> ---------
>
>   For the DMDAREPART the two sets of VecScatter is still killing you
>
> VecScatterBegin     2907 1.0 2.7453e-02 2.1 0.00e+00 0.0 9.2e+07 7.6e+02 0.0e+00  0  0 92 99  0   0  0 98 99  0     0
> VecScatterEnd       2907 1.0 1.8748e-01 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00  2  0  0  0  0   2  0  0  0  0     0

73 µs per scatter

> VecScatterBegin     1393 3.0 3.2119e-02112.6 0.00e+00 0.0 5.9e+06 3.2e+01 0.0e+00  0  0  6  0  0   0  0 99 99  0     0
> VecScatterEnd       1393 3.0 3.2946e-01 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00  4  0  0  0  0  99  0  0  0  0     0

259 µs per scatter

These scatter costs don't seem that bad.

> Ideas on how to proceed? From anyone?

We actually have a lot of irregular/high-degree communication patterns
in DMPlex's use of SF.  I think it would be valuable to add an analysis
component that builds a good mapping to the communication primitives.
It's not clear to me that it's needed here at the present scale.
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