[petsc-users] Need to create $PREFIX/include explicitly

[Barry Smith]

  Fixed in master and next. Thanks for reporting it.

   Barry

BTW: I also updated some routines in moab.cxx for changes in how we handle setfromoptions in master

> On Jan 28, 2015, at 7:39 PM, Vijay S. Mahadevan <vijay.m at gmail.com> wrote:
> 
> With the current master, when using a prefix, configuration fails with
> the following error message. I've not attached configure.log since its
> around 7MB (but definitely can send that if that helps further
> deciphering the issue). The problem here seems to be that
> $PREFIX/include is not created (while $PREFIX/lib is created
> explicitly with mkdir -p). If I manually create $PREFIX/include and
> rerun configure, everything proceeds fine. Minor annoyance.
> 
> I am not sure whether I just pulled in between merges though. My
> latest hash: c04667f413dc6e46059f28faddb2b19f70ad4cfd.
> 
> Command:
> ./configure --CFLAGS="-O2 -mtune=generic"
> --CPPFLAGS=-I/usr/software/metis-5.1.0/include --CXXFLAGS="-O2
> -mtune=generic" --FFLAGS="-O2 -mtune=generic"
> --LDFLAGS="-L/usr/software/moab/dev/optimized/lib
> -L/usr/software/pnetcdf-1.3.1/lib -L/usr/software/zoltan-3.6/lib
> -L/usr/software/ptscotch-6.0/lib -L/usr/software/parmetis-4.0.3/lib
> -L/usr/software/metis-5.1.0/lib" --LIBS="-lpnetcdf -lparmetis -lmetis
> -lm" --download-hypre=yes --download-mumps=yes
> --download-scalapack=yes --download-suitesparse=yes
> --prefix=/usr/software/petsc/dev/ubuntu_standalone_opt
> --with-blas-lapack-dir=/usr
> --with-boost-dir=/usr/software/boost/current --with-clanguage=C++
> --with-cmake=/usr/software/cmake/bin/cmake --with-cuda=0
> --with-debugging=0 --with-fortran-interfaces=1
> --with-fortran-kernels=1 --with-fortran=1
> --with-hdf5-dir=/usr/software/hdf5-1.8.11
> --with-metis-dir=/usr/software/metis-5.1.0
> --with-moab-include=/usr/software/moab/dev/optimized/include
> --with-moab-lib="-lMOAB -liMesh -lmbcoupler -lzoltan -lptscotch
> -lptscotcherr -lptscotcherrexit -lscotch -lscotcherr -lscotcherrexit
> -lz -lm " --with-mpi-dir=/usr/software/mpich-3.0.4
> --with-netcdf-dir=/usr/software/netcdf-4.3.0 --with-openmp=0
> --with-parmetis-dir=/usr/software/parmetis-4.0.3 --with-pic=1
> --with-ptscotch-include=/usr/software/ptscotch-6.0/include
> --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr
> -lptscotcherrexit -lscotch -lscotcherr -lscotcherrexit -lz -lm"
> --with-shared-libraries=1 PETSC_ARCH=ubuntu_standalone_opt
> 
> Error:
> *******************************************************************************
>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> for details):
> -------------------------------------------------------------------------------
> Error running make on MUMPS: Could not execute "mkdir -p
> /usr/software/petsc/dev/ubuntu_standalone_opt/lib && cd
> /home/vijaysm/code/petsc/ubuntu_standalone_opt/externalpackages/MUMPS
> && cp -f lib/*.* /usr/software/petsc/dev/ubuntu_standalone_opt/lib/.
> && cp -f include/*.*
> /usr/software/petsc/dev/ubuntu_standalone_opt/include/.":
> cp: target '/usr/software/petsc/dev/ubuntu_standalone_opt/include/.'
> is not a directory
> *******************************************************************************
> 
> Vijay