[petsc-users] Using MUMPS and (PT)SCOTCH with PETSC

Fri Sep 5 14:17:50 CDT 2014

Hi Barry,

Thanks for the suggestion. I downloaded the scotch tar ball in the petsc
source directory, and set up the configure flag as suggested, but I got the
following error:
================
make[1]: Leaving directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make:
*** No rule to make target `ptesmumps'.  Stop.
*******************************************************************************
===============================================================================

Trying to download file://scotch_5.1.12b.tar.gz for PTSCOTCH

===============================================================================

 ===============================================================================

Compiling PTScotch; this may take several minutes

 ===============================================================================

*******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
details):
-------------------------------------------------------------------------------
Error running make on PTScotch: Could not execute "cd
/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src
&& make clean ptesmumps":
/bin/mkdir -p ../bin
/bin/mkdir -p ../include
/bin/mkdir -p ../lib
(cd libscotch ;      make clean)
make[1]: Entering directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch'
rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h
*scotchf.h y.output dummysizes
make[1]: Leaving directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch'
(cd scotch ;         make clean)
make[1]: Entering directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch'
rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase
gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst
gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst
make[1]: Leaving directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch'
(cd libscotchmetis ; make clean)
make[1]: Entering directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'
rm -f *~ *.o lib*.a
make[1]: Leaving directory
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make:
*** No rule to make target `ptesmumps'.  Stop.
*******************************************************************************

makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or
directory
/clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117:
/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables:
No such file or directory
/clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993:
/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules:
No such file or directory
make: *** No rule to make target
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'.
 Stop.
makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or
directory
/clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117:
/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables:
No such file or directory
/clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993:
/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules:
No such file or directory
make: *** No rule to make target
`/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'.
 Stop.
makefile:15: conf/petscvariables: No such file or directory
make: *** No rule to make target `conf/petscvariables'.  Stop.

================

Do you know what am I missing?

Thanks,

Kai

On Fri, Sep 5, 2014 at 11:25 AM, Barry Smith <bsmith at mcs.anl.gov> wrote:

>
>    Set a new value for PETSC_ARCH
>
>    Obtain the Scotch 5.1.12b tar ball.  Used ./configure
> —download-ptscotch=nameoftarball.tar.gz —download-mumps —download-scalapack
> etc
>
>    It will use the provided tar ball instead of downloading 6.0.0  Send
> errors to petsc-maint at mcs.anl.gov
>
>    Barry
>
>
>
> On Sep 5, 2014, at 10:06 AM, Evan Um <evanum at gmail.com> wrote:
>
> > Dear PETSC users,
> >
> > I tried to use SCOTCH 5.1.12b in my PETSC codes since MUMPS has
> compatibility issues with the latest SCOTCH library.
>
> > I was told that SCOTCH/6.0.0 that comes with PETSC/3.5.0 is
> automatically downloaded and installed. Is it still possible to use old
> SCOTCH library 5.1.2b in PETSC? As mentioned in MUMPS's FAQ, MUMPS has
> compatibility issues with the latest SCOTCH. MUMPS developers suggest that
> MUMPS should work with SCOTCH 5.1.12b. In advance, thanks for your kind
> comments.
> >
> > Regards,
> > Evan
> >
> > Errors from MUMPS with SCOTCH 6.0.0 and PETSC 3.5.0:
> > (5): ERROR: stratParserParse: invalid method parameter name "type",
> before
> "h,vert=100,low=h{pass=10},asc=b{width=3,bnd=f{bal=0.2},org=h{pass=10}f{bal=0.2}}}}},ole=s,ose=s,osq=n{sep=/(vert>120)?m{type=h,vert=100,low=h{pass=10},asc=b{width=3,bnd=f{bal=0.2},org=h{pass=10}f{bal=0.2}}};,ole=f{cmin=15,cmax=100000,frat=0.0},ose=g}}
>
>

-- 
Kai Song
<ksong at lbl.gov> 1.510.495.2180
1 Cyclotron Rd. Berkeley, CA94720, MS-50B 3209
High Performance Computing Services (HPCS)
Lawrence Berkeley National Laboratory - http://scs.lbl.gov
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