[petsc-users] Petsc/3.5.0 make test failed

[Barry Smith]

On Jul 25, 2014, at 12:23 PM, Kai Song <ksong at lbl.gov> wrote:

> Hi All,
> 
> Thanks for all the suggestions! I took Satish's advice, removed the source, and did a fresh built. 
> 
> It got through the test compiling, but the tests failed as follow:
> ==================
> Running test examples to verify correct installation
> Using PETSC_DIR=/clusterfs/voltaire/home/software/modules/petsc/3.5.0 and PETSC_ARCH=arch-linux2-c-debug
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> Number of SNES iterations = 2
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> …

   Surely it did not print … here? What was the complete message? 

   Usually this happens due to an incompatible mpiexec being used because it appears earlier in the path.

   What happens if you do

cd src/snes/examples/tutorials
make ex19
mpiexec -n 2 ./ex19 

for mpiexec use the one associated with the MPI that you built PETSc with

  Barry

> ==================
> 
> I tried to go into src/snes/examples/tutorials/ex19, but didn't find any logs. Is this error for the test Okay?
> 
> Thanks,
> 
> Kai
> 
> 
> 
> On Fri, Jul 25, 2014 at 11:06 AM, Satish Balay <balay at mcs.anl.gov> wrote:
> Its probably best to do a fresh build with the latest petsc-3.5.1 tarball and see
> if the problem is reproduceable [with --with-shared-libraries=0]
> 
> Satish
> 
> On Fri, 25 Jul 2014, Jed Brown wrote:
> 
> > Matthew Knepley <knepley at gmail.com> writes:
> >
> > > On Thu, Jul 24, 2014 at 5:33 PM, Kai Song <ksong at lbl.gov> wrote:
> > >
> > >> Hi Satish,
> > >>
> > >> Thanks for the quick response. I attached the make.log in this email, and
> > >> a quick glance, I didn't see any obvious errors.
> > >>
> > >
> > > This never built the MUMPS directory, even though you have PETSC_HAVE_MUMPS
> > > defined. I can see two
> > > possible reasons for this:
> > >
> > >   1) You distribution as missing files
> > >
> > >   2) You have two copies of PETSc fighting each other here (old PETSC_DIR?)
> > >
> > > Can you make sure you have the file mumps.c in
> > >
> > >   src/mat/impls/aij/mpi/mumps
> > >
> > > Jed, how do we check what make is doing here?
> >
> > mumps.c should be listed in $PETSC_ARCH/conf/files after the code
> > generator runs.  Possibly a file system problem or tinkering caused it
> > to appear up-to-date after reconfiguring?  (Just speculating because we
> > haven't seen this problem before.)
> >
> 
> 
> 
> 
> -- 
> Kai Song
> <ksong at lbl.gov> 1.510.495.2180
> 1 Cyclotron Rd. Berkeley, CA94720, MS-50B 3209
> High Performance Computing Services (HPCS) 
> Lawrence Berkeley National Laboratory - http://scs.lbl.gov