[petsc-users] Petsc/3.5.0 make test failed

[Satish Balay]

Try:

cd /clusterfs/voltaire/home/software/source/petsc-3.5.0
rm -rf /clusterfs/voltaire/home/software/modules/petsc/3.5.0
make PETSC_DIR=/clusterfs/voltaire/home/software/source/petsc-3.5.0 PETSC_ARCH=arch-linux2-c-debug install


The previous build was with [default] --with-shared-libraries=1 - but
the current built is using --with-shared-libraries=0. So the libraries
installed at the prefix location are inconsistant.

Satish

On Thu, 24 Jul 2014, Kai Song wrote:

> Hi Satish,
> 
> Thanks for the quick response. I attached the make.log in this email, and a
> quick glance, I didn't see any obvious errors.
> 
> Please let me know if you need any additional informations.
> 
> Thanks,
> 
> Kai
> 
> 
> 
> On Thu, Jul 24, 2014 at 5:17 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> 
> > Perhaps there were errors during the build. Can you send us make.log
> > for this build?
> >
> > Satish
> >
> > On Thu, 24 Jul 2014, Kai Song wrote:
> >
> > > Hi Petsc community,
> > >
> > > I just installed petsc/3.5.0 on our RHEL-6 system, with gcc/4.4.7 and
> > > openmpi/1.6.5
> > >
> > > The program built and installed fine, but make test failed on the
> > following
> > > error:
> > > ================
> > > ...
> > > mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3
> > > -O0  -o ex19  ex19.o
> > > -L/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib  -lpetsc
> > > -Wl,-rpath,/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib
> > > -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack
> > > -lflapack -lfblas -lparmetis -lmetis -lX11 -lssl -lcrypto -lpthread
> > > -L/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/lib
> > > -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpi_f90 -lmpi_f77 -lgfortran
> > -lm
> > > -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lnuma -lrt -lnsl -lutil
> > > -lgcc_s -lpthread -ldl
> > > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
> > > undefined reference to `MatGetFactor_aij_mumps'
> > > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
> > > undefined reference to `MatGetFactor_baij_mumps'
> > > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
> > > undefined reference to `MatPartitioningCreate_Parmetis'
> > > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
> > > undefined reference to `MatGetFactor_sbaij_mumps'
> > > collect2: ld returned 1 exit status
> > > gmake[3]: [ex19] Error 1 (ignored)
> > > ...
> > > ================
> > >
> > > I used the following configure line:
> > > ./configure --prefix=/software/modules/petsc/3.5.0
> > >  --download-fblaslapack=1 --download-mumps=1 --download-parmetis=1
> > > --download-scalapack --download-metis=1
> > >
> > --with-mpi-dir=/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/
> > >
> > > Is there anything that I am missing in the built process? Any help would
> > be
> > > great appreciated!
> > >
> > > Thanks in advance!
> > >
> > > Kai
> > >
> > >
> >
> >
> 
> 
>