[petsc-users] Local size 7 not compatible with block size 13

Thu Jan 16 14:35:55 CST 2014

Hi Barry,

It still fails in cd0e7f7. Error message below.

Jay

[1]PETSC ERROR: --------------------- Error Message 
------------------------------------
[1]PETSC ERROR: Arguments are incompatible!
[1]PETSC ERROR: Local size 7 not compatible with block size 13!
[1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message 
------------------------------------
[0]PETSC ERROR: Arguments are incompatible!
[0]PETSC ERROR: Local size 7 not compatible with block size 13!
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7  
GIT Date: 2014-01-15 20:33:42 -0600
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by 
jay Thu Jan 16 15:31:56 2014
------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7  
GIT Date: 2014-01-15 20:33:42 -0600
[1]PETSC ERROR: See docs/changes/index.html for recent updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by 
jay Thu Jan 16 15:31:56 2014
[1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
[1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014
[1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no 
--download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 
--download-hypre=yes --with-debugging=0
[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in 
/home/jay/Programs/petsc/src/vec/is/utils/pmap.c
[1]PETSC ERROR: MatSetBlockSizes() line 6772 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
[0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014
[0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no 
--download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 
--download-hypre=yes --with-debugging=0
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in 
/home/jay/Programs/petsc/src/vec/is/utils/pmap.c
[1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in 
/home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
[1]PETSC ERROR: MatDuplicate() line 4116 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
[1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in 
/home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
[1]PETSC ERROR: MatDuplicate() line 4116 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
[1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in 
/home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: MatDuplicate() line 4116 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
TSGetRHSMats_Private() line 605 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: TSComputeIJacobian() line 782 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in 
/home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
[1]PETSC ERROR: SNESTSFormJacobian() line 3541 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in 
/home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
[0]PETSC ERROR: MatDuplicate() line 4116 in 
/home/jay/Programs/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: TSGetRHSMats_Private() line 605 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: SNESComputeJacobian() line 2253 in 
/home/jay/Programs/petsc/src/snes/interface/snes.c
[1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in 
/home/jay/Programs/petsc/src/snes/impls/ls/ls.c
[1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in 
/home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
[0]PETSC ERROR: SNESTSFormJacobian() line 3541 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
[1]PETSC ERROR: TSStep_ARKIMEX() line 776 in 
/home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
[1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in 
/home/jay/Programs/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in 
/home/jay/Programs/petsc/src/snes/impls/ls/ls.c
[0]PETSC ERROR: SNESSolve() line 3812 in 
/home/jay/Programs/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: TSStep_ARKIMEX() line 776 in 
/home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: TSSolve() line 2741 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: checkPetscError() line 65 in 
/home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
[0]PETSC ERROR: TSStep() line 2625 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: TSSolve() line 2741 in 
/home/jay/Programs/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: checkPetscError() line 65 in 
/home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp

On 01/16/2014 08:55 AM, Jay J. Billings wrote:
> Thanks very much Barry. I'll check it out.
>
> Jay
>
> On 01/15/2014 09:35 PM, Barry Smith wrote:
>>     This is now fixed in master and next
>>
>> On Jan 15, 2014, at 4:06 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>>
>>>    Jay,
>>>
>>>      This is our bug. We’ll need to figure out the fix and get back to you.
>>>
>>>     Barry
>>>
>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings <billingsjj at ornl.gov> wrote:
>>>
>>>> Everyone,
>>>>
>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that.
>>>>
>>>> Jay
>>>>
>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------
>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------
>>>> [0]PETSC ERROR: Arguments are incompatible!
>>>> [1]PETSC ERROR: Arguments are incompatible!
>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13!
>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13!
>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893  GIT Date: 2014-01-13 09:37:41 -0500
>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>>> [1]PETSC ERROR: See docs/index.html for manual pages.
>>>> [1]PETSC ERROR: ------------------------------------------------------------------------
>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014
>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014
>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>>>> [1]PETSC ERROR: ------------------------------------------------------------------------
>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>>>> ------------------------------------------------------------------------
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893  GIT Date: 2014-01-13 09:37:41 -0500
>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>>> [0]PETSC ERROR: See docs/index.html for manual pages.
>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014
>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014
>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>>>>
>>>> -- 
>>>> Jay Jay Billings
>>>> Oak Ridge National Laboratory
>>>> Twitter Handle: @jayjaybillings
>>>>