[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory

Satish Balay balay at mcs.anl.gov
Fri Aug 29 10:26:43 CDT 2014 

#define PETSC_VERSION_GIT "v3.5.1-1951-g15ac067"

Hm - you are using recent petsc master - and it stills broken...

Perhaps Karl will check..

Perhaps we should process --with-cuda-arch in setCompilers.py - and not
cuda.py.. [but then - there is a dependency on precision..]

Satish


On Fri, 29 Aug 2014, Ashwin Srinath wrote:

> Hello,
> 
> My original message is awaiting approval as attaching configure.log made it
> too large. I hope it's okay for me to repeat here:
> 
> I'm having a similar issue with CUDA 6.0. PETSc configured just fine with
> version 5.0 and 5.5, and I'm using an almost identical configure command
> (only changing --with-cuda-dir). I get the following error:
> 
> CUDA version error: PETSC currently requires CUDA version 4.0 or higher -
> when compiling with CUDA
> 
> I suspect the problem might be with cuda.py checking for my CUDA version,
> but I can't be sure.
> 
> Any suggestions?
> 
> 
> Thanks,
> Ashwin
> 
> 
> On Fri, Aug 29, 2014 at 10:31 AM, Matthew Knepley <knepley at gmail.com> wrote:
> 
> > On Fri, Aug 29, 2014 at 9:35 AM, Dominic Meiser <dmeiser at txcorp.com>
> > wrote:
> >
> >>  On 08/29/2014 08:08 AM, Matthew Knepley wrote:
> >>
> >>  On Fri, Aug 29, 2014 at 8:35 AM, Christophe Ortiz <
> >> christophe.ortiz at ciemat.es> wrote:
> >>
> >>> Sorry about that.
> >>>
> >>>  Please find in attachment the configure.log file. Hope it will help
> >>> you find the error.
> >>>
> >>
> >>  Here is the problem:
> >>
> >>  Possible ERROR while running preprocessor: nvcc warning : The
> >> 'compute_10' and 'sm_10' architectures are deprecated, and may be removed
> >> in a future release.
> >> error message = {nvcc warning : The 'compute_10' and 'sm_10'
> >> architectures are deprecated, and may be removed in a future release.
> >> }
> >>
> >>  meaning the nvcc compiler does not "work" as provided. Here is a
> >> workaround:
> >>
> >>       --with-cudac='nvcc --arch=sm_35'
> >>
> >>  Dominic, I think that thrust.py should depend on cuda.py. Do you know
> >> why it does not?
> >>
> >> In principle you are right, thrust.py should depend on cuda.py.
> >>
> >> However, in my opinion, thrust.py should go away as a separate package
> >> altogether. Thrust is shipped as part of any recent version of the cuda
> >> toolkit (I forget since which version, Paul might know) and it's always
> >> installed in $CUDA_TOOLKIT_ROOT/include/thrust. Thus we can automatically
> >> deduct the thrust location from the cuda location. Thrust should be
> >> considered part of cuda.
> >>
> >
> > That does not mean the configure modules should be organized that way.
> > Thrust is a package included in CUDA, thus
> > it should have an independent module, but depend on the CUDA module.
> >
> >    Matt
> >
> >
> >>  Cheers,
> >> Dominic
> >>
> >>
> >>    Thanks,
> >>
> >>        Matt
> >>
> >>
> >>
> >>>  Christophe
> >>>
> >>> CIEMAT
> >>> Laboratorio Nacional de Fusión por Confinamiento Magnético
> >>> Unidad de Materiales
> >>> Edificio 2 - Planta 0 - Despacho 28m
> >>> Avenida Complutense 40,
> >>> 28040 Madrid, Spain
> >>> Tel: +34 91496 2582 <%2B34%2091496%202582>
> >>> Fax: +34 91346 6442 <%2B34%2091346%206442>
> >>>
> >>> --
> >>> Q
> >>> Por favor, piense en el medio ambiente antes de imprimir este mensaje.
> >>> Please consider the environment before printing this email.
> >>>
> >>>
> >>> On Fri, Aug 29, 2014 at 3:28 PM, Matthew Knepley <knepley at gmail.com>
> >>> wrote:
> >>>
> >>>> Always attach configure.log or we cannot see what went wrong.
> >>>>
> >>>>      Matt
> >>>>
> >>>>
> >>>> On Fri, Aug 29, 2014 at 2:35 AM, Christophe Ortiz <
> >>>> christophe.ortiz at ciemat.es> wrote:
> >>>>
> >>>>>   Hi Dominic and Paul,
> >>>>>
> >>>>>  Thanks for your answers. Unfortunately, it did not work. Same error
> >>>>> message related to the thrust directory:
> >>>>>
> >>>>>
> >>>>>  ./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> >>>>> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> >>>>> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
> >>>>> --with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
> >>>>> --with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
> >>>>> --with-scalar-type=real --with-precision=double --download-fblaslapack
> >>>>>
> >>>>> ===============================================================================
> >>>>>              Configuring PETSc to compile on your system
> >>>>>
> >>>>>
> >>>>> ===============================================================================
> >>>>> TESTING: checkInclude from
> >>>>> config.headers(config/BuildSystem/config/headers.py:86)
> >>>>>
> >>>>>  *******************************************************************************
> >>>>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> >>>>> for details):
> >>>>>
> >>>>> -------------------------------------------------------------------------------
> >>>>> --with-thrust-dir=/usr/local/cuda-6.0/include did not work
> >>>>>
> >>>>> *******************************************************************************
> >>>>>
> >>>>>
> >>>>>  I do not see what else to do...I have a standard CUDA installation
> >>>>> that came with thrust.
> >>>>> I am using ubuntu 12.04, I do not know if that could help.
> >>>>> I tried with PETSc 3.4.1 and 3.5.1. Same problem.
> >>>>>
> >>>>>  Christophe
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>> ------------------------------
> >>>>>>
> >>>>>> Message: 3
> >>>>>> Date: Thu, 28 Aug 2014 08:38:12 -0600
> >>>>>> From: Dominic Meiser <dmeiser at txcorp.com>
> >>>>>> To: petsc-users at mcs.anl.gov
> >>>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
> >>>>>>         Problem with thrust directory
> >>>>>> Message-ID: <53FF3ED4.1090002 at txcorp.com>
> >>>>>> Content-Type: text/plain; charset=UTF-8; format=flowed
> >>>>>>
> >>>>>> Can you try configuring with
> >>>>>>
> >>>>>> --with-thrust-dir=/usr/local/cuda-6.0/include
> >>>>>>
> >>>>>> I.e. omit the 'thrust' at the end of the path. Probably you'll need
> >>>>>> the
> >>>>>> same fix with cusp:
> >>>>>>
> >>>>>> --with-cusp-dir=/usr/local/cuda-6.0/include
> >>>>>>
> >>>>>> Cheers,
> >>>>>> Dominic
> >>>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>>
> >>>>>> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
> >>>>>> > Hi all,
> >>>>>> >
> >>>>>> > I have implemented a problem of coupled diffusion equations in 1D
> >>>>>> > using PETSc. I was able to configure PETSC with and without MPI. The
> >>>>>> > code runs well in both cases.
> >>>>>> >
> >>>>>> > Now I would like to test CUDA but I am unable to configure it. I get
> >>>>>> > an error message related to thrust directory.
> >>>>>> >
> >>>>>> > The options I use to configure are the following:
> >>>>>> >
> >>>>>> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> >>>>>> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> >>>>>> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
> >>>>>> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
> >>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
> >>>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
> >>>>>> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
> >>>>>> > --with-precision=double --download-f-blas-lapack
> >>>>>> >
> >>>>>> > The error message I get is:
> >>>>>> >
> >>>>>> >
> >>>>>> ===============================================================================
> >>>>>> >              Configuring PETSc to compile on your system
> >>>>>> >
> >>>>>> ===============================================================================
> >>>>>> > TESTING: checkInclude from
> >>>>>> > config.headers(config/BuildSystem/config/headers.py:86)
> >>>>>> >
> >>>>>> *******************************************************************************
> >>>>>> >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
> >>>>>> configure.log
> >>>>>> > for details):
> >>>>>> >
> >>>>>> -------------------------------------------------------------------------------
> >>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
> >>>>>> >
> >>>>>> *******************************************************************************
> >>>>>> >
> >>>>>> >
> >>>>>> > Did I miss something ?
> >>>>>> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
> >>>>>> >
> >>>>>> > Many thanks in advance for your help.
> >>>>>> > Christophe
> >>>>>> >
> >>>>>>
> >>>>>>
> >>>>>> --
> >>>>>> Dominic Meiser
> >>>>>> Tech-X Corporation
> >>>>>> 5621 Arapahoe Avenue
> >>>>>> Boulder, CO 80303
> >>>>>> USA
> >>>>>> Telephone: 303-996-2036
> >>>>>> Fax: 303-448-7756
> >>>>>> www.txcorp.com
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> ------------------------------
> >>>>>>
> >>>>>> Message: 4
> >>>>>> Date: Thu, 28 Aug 2014 08:30:40 -0600
> >>>>>> From: Paul Mullowney <paulmullowney at gmail.com>
> >>>>>> To: Dominic Meiser <dmeiser at txcorp.com>
> >>>>>> Cc: petsc-users at mcs.anl.gov
> >>>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
> >>>>>>         Problem with thrust directory
> >>>>>> Message-ID:
> >>>>>>         <CAMJ8fwroFUxG-rpbMpaJEw=
> >>>>>> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
> >>>>>> Content-Type: text/plain; charset="utf-8"
> >>>>>>
> >>>>>> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
> >>>>>> -Paul
> >>>>>>
> >>>>>>
> >>>>>> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
> >>>>>> wrote:
> >>>>>>
> >>>>>> > Can you try configuring with
> >>>>>> >
> >>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include
> >>>>>> >
> >>>>>> > I.e. omit the 'thrust' at the end of the path. Probably you'll need
> >>>>>> the
> >>>>>> > same fix with cusp:
> >>>>>> >
> >>>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include
> >>>>>> >
> >>>>>> > Cheers,
> >>>>>> > Dominic
> >>>>>> >
> >>>>>> >
> >>>>>> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
> >>>>>> >
> >>>>>> >> Hi all,
> >>>>>> >>
> >>>>>> >> I have implemented a problem of coupled diffusion equations in 1D
> >>>>>> using
> >>>>>> >> PETSc. I was able to configure PETSC with and without MPI. The
> >>>>>> code runs
> >>>>>> >> well in both cases.
> >>>>>> >>
> >>>>>> >> Now I would like to test CUDA but I am unable to configure it. I
> >>>>>> get an
> >>>>>> >> error message related to thrust directory.
> >>>>>> >>
> >>>>>> >> The options I use to configure are the following:
> >>>>>> >>
> >>>>>> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> >>>>>> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> >>>>>> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
> >>>>>> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
> >>>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
> >>>>>> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
> >>>>>> --download-txpetscgpu=1
> >>>>>> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
> >>>>>> >> --download-f-blas-lapack
> >>>>>> >>
> >>>>>> >> The error message I get is:
> >>>>>> >>
> >>>>>> >> ============================================================
> >>>>>> >> ===================
> >>>>>> >>              Configuring PETSc to compile on your system
> >>>>>> >> ============================================================
> >>>>>> >> ===================
> >>>>>> >> TESTING: checkInclude from config.headers(config/
> >>>>>> >> BuildSystem/config/headers.py:86) ******************************
> >>>>>> >> *************************************************
> >>>>>> >>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
> >>>>>> configure.log for
> >>>>>> >> details):
> >>>>>> >> ------------------------------------------------------------
> >>>>>> >> -------------------
> >>>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
> >>>>>> >> ************************************************************
> >>>>>> >> *******************
> >>>>>> >>
> >>>>>> >>
> >>>>>> >> Did I miss something ?
> >>>>>> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
> >>>>>> >>
> >>>>>> >> Many thanks in advance for your help.
> >>>>>> >> Christophe
> >>>>>> >>
> >>>>>> >>
> >>>>>> >
> >>>>>> > --
> >>>>>> > Dominic Meiser
> >>>>>> > Tech-X Corporation
> >>>>>> > 5621 Arapahoe Avenue
> >>>>>> > Boulder, CO 80303
> >>>>>> > USA
> >>>>>> > Telephone: 303-996-2036
> >>>>>> > Fax: 303-448-7756
> >>>>>> > www.txcorp.com
> >>>>>> >
> >>>>>> >
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> >>>>>> >
> >>>>>>
> >>>>>> ------------------------------
> >>>>>>
> >>>>>> _______________________________________________
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> >>>>>> petsc-users at mcs.anl.gov
> >>>>>> https://lists.mcs.anl.gov/mailman/listinfo/petsc-users
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> >>>>>
> >>>>
> >>>>
> >>>>   --
> >>>> What most experimenters take for granted before they begin their
> >>>> experiments is infinitely more interesting than any results to which their
> >>>> experiments lead.
> >>>> -- Norbert Wiener
> >>>>
> >>>
> >>>
> >>
> >>
> >>  --
> >> What most experimenters take for granted before they begin their
> >> experiments is infinitely more interesting than any results to which their
> >> experiments lead.
> >> -- Norbert Wiener
> >>
> >>
> >>
> >> --
> >> Dominic Meiser
> >> Tech-X Corporation
> >> 5621 Arapahoe Avenue
> >> Boulder, CO 80303
> >> USA
> >> Telephone: 303-996-2036
> >> Fax: 303-448-7756www.txcorp.com
> >>
> >>
> >
> >
> > --
> > What most experimenters take for granted before they begin their
> > experiments is infinitely more interesting than any results to which their
> > experiments lead.
> > -- Norbert Wiener
> >
>

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