[petsc-users] make all freezes

[Analabha Roy]

On Sep 17, 2013 9:39 PM, "Satish Balay" <balay at mcs.anl.gov> wrote:
>
> This doesn't make any sense..
>
> If the build is hanging - we'd like to know exactly where its hanging.
> [perhaps copy/paste]
>

It didn't dump any output, either to stdout or Stderr. There was nothing to
copy/paste.

> If the run is hanging - we'd like to see the stack trace [via gdb] of the
> location of the hang.
>
> xorg-devel should'nt make a difference [from what we know]..
>

Doesn't it need xorg headers for rendering graphic output via petscdraw?

Maybe it was one of the dependencies of xorg devel that did the trick.

I'll try to reproduce the problem and see.

> Satish
>
> On Tue, 17 Sep 2013, Analabha Roy wrote:
>
> > Update again:
> >
> >  On a hunch, I went to a non-graphical tty where compilation worked! So
I
> > installed all xorg-devel packages from repository and now compilation
seems
> > to be working.
> >
> > Guess it just needed those...
> >
> > Thanks.
> >
> >
> >
> > On Tue, Sep 17, 2013 at 1:24 PM, Analabha Roy <hariseldon99 at gmail.com
>wrote:
> >
> > > Update: Purging openmpi and reinstalling did not work. "make all" in
> > > $PETSC_DIR still freezes.
> > >
> > >
> > > On Tue, Sep 17, 2013 at 11:17 AM, Analabha Roy <hariseldon99 at gmail.com
>wrote:
> > >
> > >> Hi,
> > >>
> > >> Sorry for the late reply
> > >>
> > >>
> > >> On Mon, Sep 16, 2013 at 7:03 PM, Matthew Knepley <knepley at gmail.com
>wrote:
> > >>
> > >>> On Mon, Sep 16, 2013 at 1:18 AM, Analabha Roy <
hariseldon99 at gmail.com>wrote:
> > >>>
> > >>>> Hi,
> > >>>>
> > >>>>  I just got a new laptop and installed linux mint KDE. Details
below:
> > >>>>
> > >>>> samsung NP300E5X-U01IN:
> > >>>> Kernel 3.8.0-26-generic #38-Ubuntu SMP
> > >>>> Four Intel Unknown 800MHz processors, 16760.20 total bogomips,
3733M RAM
> > >>>> System library 2.17.0
> > >>>>
> > >>>>
> > >>>> I tried to compile petsc-3.4.2 with the following configuration
> > >>>>
> > >>>> ./configure --with-scalar-type=complex --with-c2html=0
> > >>>> --with-debugging=no --with-fortran-kernels=1 --with-hdf5=yes
> > >>>> --with-hdf5-dir=/usr --enable-parallel
> > >>>>
> > >>>>
> > >>>> The configure log is posted here<
https://dl.dropboxusercontent.com/u/2769707/configure.log>(dropbox)
> > >>>>
> > >>>> The configure script seems to run okay, but running "make
> > >>>> PETSC_DIR=/usr/local/src/petsc-3.4.2 PETSC_ARCH=arch-linux2-c-opt
all" or
> > >>>> "make all" causes the compile to hang with no output.
> > >>>>
> > >>>
> > >>> This sounds like a CMake problem on your machine. Please try running
> > >>>
> > >>>   make all-legacy
> > >>>
> > >>> although it seems like your Builder run succeeded.
> > >>>
> > >>
> > >>
> > >> I purged cmake using apt-get and reinstalled it from scratch. The
problem
> > >> persists
> > >>
> > >> I also ran "make all-legacy". Same problem. No output. Just hangs.
> > >>
> > >>
> > >>
> > >>>
> > >>> Downgrading to a previous version of petsc does not seem to help.
The
> > >>>> problem persists. Using default options "./configure
> > >>>> --with-scalar-type=complex" doesn;t seem to change anything either.
> > >>>>
> > >>>> Running ./config/builder.py works, but then "make test" hangs
> > >>>> similarly, as does running make on any example or any of my petsc
sources.
> > >>>>
> > >>>
> > >>> This is different. It is likely that your MPI is not setup
correctly to
> > >>> launch on this machine. Can you
> > >>> run any MPI job?
> > >>>
> > >>>
> > >> Yes. Both this hello world example<
http://www.dartmouth.edu/~rc/classes/intro_mpi/hello_world_ex.html>and this
calculation
> > >> of pi<
http://www.mcs.anl.gov/research/projects/mpi/usingmpi/examples/simplempi/cpi_c.htm>compiles
without errors and runs as expected.
> > >>
> > >>
> > >> Should I try purging openmpi and reinstalling?
> > >>
> > >>
> > >>>    Thanks,
> > >>>
> > >>>       Matt
> > >>>
> > >>>
> > >>>>  Thanks in advance,
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>> --
> > >>>> ---
> > >>>> *Analabha Roy*
> > >>>> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<
http://csirhrdg.res.in/poolsra.htm>
> > >>>> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
> > >>>> Section 1, Block AF
> > >>>> Bidhannagar, Calcutta 700064
> > >>>> India
> > >>>> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
> > >>>> *Webpage*: http://www.ph.utexas.edu/~daneel/
> > >>>>
> > >>>
> > >>>
> > >>>
> > >>> --
> > >>> What most experimenters take for granted before they begin their
> > >>> experiments is infinitely more interesting than any results to
which their
> > >>> experiments lead.
> > >>> -- Norbert Wiener
> > >>>
> > >>
> > >>
> > >>
> > >> --
> > >> ---
> > >> *Analabha Roy*
> > >> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<
http://csirhrdg.res.in/poolsra.htm>
> > >> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
> > >> Section 1, Block AF
> > >> Bidhannagar, Calcutta 700064
> > >> India
> > >> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
> > >> *Webpage*: http://www.ph.utexas.edu/~daneel/
> > >>
> > >
> > >
> > >
> > > --
> > > ---
> > > *Analabha Roy*
> > > C.S.I.R <http://www.csir.res.in>  Senior Research Associate<
http://csirhrdg.res.in/poolsra.htm>
> > > Saha Institute of Nuclear Physics <http://www.saha.ac.in>
> > > Section 1, Block AF
> > > Bidhannagar, Calcutta 700064
> > > India
> > > *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
> > > *Webpage*: http://www.ph.utexas.edu/~daneel/
> > >
> >
> >
> >
> >
>
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