[petsc-users] Problem with GAMG elasticity case:'createdefaultdata' not set(?) need to support NULL data!

[Mark F. Adams]

Damn Matt, you know my code better than I do.

Do we require that users call SetFromOptions? Or PCGAMGSetType in this case. This seems a little bad.

Mark

On Oct 16, 2013, at 2:28 PM, Matthew Knepley <knepley at gmail.com> wrote:

> On Wed, Oct 16, 2013 at 1:22 PM, Einar Sørheim <einar.sorheim at gmail.com> wrote:
> Hi
> I am testing out the petsc ksp solvers in our own FEM code, in particluar we are interseted in the GAMG preconditioner.
> Applying it to our mechanical problem we get some error messages from petsc, which I suspect is due to some necessary init calls that are missing. First the error message:
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Petsc has generated inconsistent data!
> [0]PETSC ERROR: 'createdefaultdata' not set(?) need to support NULL data!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013 
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: D:\Programming\gits\Alsim\SharedModules - Copy\Source\Release\Alsim_nypetsc.exe on a arch-mswin-c-opt named CMP3 by admeinar Wed Oct 16 18:23:32 2013
> [0]PETSC ERROR: Libraries linked from /cygdrive/d/Programming/petsc-3.4.3/arch-mswin-c-opt/lib
> [0]PETSC ERROR: Configure run at Wed Oct 16 14:46:01 2013
> [0]PETSC ERROR: Configure options --with-debugging=0 --with-openmp=yes --with-pthread=no --with-cc="win32fe icl" --with-fc="win32fe ifort" --with-cxx="win32fe icl" --with-blas-lapack-dir="C:/Program Files (x86)/Intel/Composer XE 2013/mkl/lib/intel64" --download-superlu --with-sowing=0 --with-c2html=0 --with-mpi-dir="C:/Program Files (x86)/Intel/MPI/4.1.0.028/em64t" --useThreads=0 --useThreads=0
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: PCSetUp_GAMG() line 609 in src/ksp/pc/impls/gamg/D:\PROGRA~1\PETSC-~1.3\src\ksp\pc\impls\gamg\gamg.c
> [0]PETSC ERROR: PCSetUp() line 890 in src/ksp/pc/interface/D:\PROGRA~1\PETSC-~1.3\src\ksp\pc\INTERF~1\precon.c
> [0]PETSC ERROR: KSPSetUp() line 278 in src/ksp/ksp/interface/D:\PROGRA~1\PETSC-~1.3\src\ksp\ksp\INTERF~1\itfunc.c
> 
> In short our code looks like the following:
> 
> 
>       call KSPGetPC(ksp,pc,ierr)
>       tol = 1.e-20
>       call KSPSetTolerances(ksp,tol,PETSC_DEFAULT_DOUBLE_PRECISION,PETSC_DEFAULT_DOUBLE_PRECISION,imaxiter,ierr)
>       select case (i_Precond)
> 
>       case ( 3 )
>          call PCSetType(pc,PCGAMG,ierr)
> !         call PCGAMGInitializePackage()
> !         call PCCreate_GAMG(pc,ierr)
>       case DEFAULT
>          call PCSetType(pc,PCJACOBI,ierr)
>       end select
> 
> !      call PCSetType(pc,PCJACOBI,ierr)
>       select case (i_solver)
>       case ( 0 )
>          call KSPSetType(ksp,KSPCG,ierr)
>       case DEFAULT
>          call KSPSetType(ksp,KSPCG,ierr)
>       end select
>       call KSPCGSetType(ksp,KSP_CG_SYMMETRIC,ierr)
>       if (i_nodedof==3) then
>          write(*,*) "Set coord, number of nodes is:", i_nodes/i_nodedof
>          call VecCreateSeqWithArray(MPI_COMM_SELF,3,i_nodes,coords_,vec_coords,ierr)
>          call MatNullSpaceCreateRigidBody(vec_coords,Matnull,ierr)
>          call MatSetNearNullSpace(A,Matnull,ierr)
>          call MatNullSpaceDestroy(Matnull,ierr)
>          call PetscViewerASCIIOpen(PETSC_COMM_WORLD, "Coordvec.m", viewer,ierr)
>          call PetscViewerSetFormat( viewer, PETSC_VIEWER_ASCII_MATLAB,ierr)
>          call VecView(vec_coords,viewer,ierr)
>          call PetscViewerDestroy( viewer,ierr )
>          call VecDestroy(vec_coords,ierr)
>          write(*,*) "Finish setting null space ierr =", ierr
> !         call PCSetCoordinates( pc, 3,i_nodes/i_nodedof, coords_, ierr )
> !         CHKERRQ(ierr)
>       end if
> 
> 
> !      call KSPSetFromOptions(ksp,ierr)
> 
> It looks like you have not set the type of aggregation. If you uncomment this SetFromOptions()
> it should be done automatically.
> 
>    Matt
>  
>       call KSPSetInitialGuessNonzero(ksp,PETSC_TRUE,ierr)
>       call KSPSetUp(ksp,ierr)
>       call PetscTime(t0,ierr)
>       write(*,*) "Time setup", t0-t1
> ! - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
> !                      Solve the linear system
> ! - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
> 
>       call KSPSolve(ksp,b,x,ierr)
>       call PetscTime(t1,ierr) 
> 
> -- 
> Einar Sørheim
> 
> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener

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