[petsc-users] Fwd: PETSc installation on Intrepid

Jitendra Kumar jitendra.ornl at gmail.com
Mon Jul 29 16:03:35 CDT 2013 

Upper/lower case errors appears to be for variables defined as "parameter".
I tried changing the cases to be consistent in utility.F90 and that makes
the compilation errors go away. But again I cannot reproduce the same error
in a simple test program.
The exact version of PFLOTRAN builds fine with GCC and PGI compilers on
other machines. I am continuing to look into this.

Jitu



On Mon, Jul 29, 2013 at 3:25 PM, Satish Balay <balay at mcs.anl.gov> wrote:

> >>>>>>
> mpixlf2003_r -qnosave -c  -O3 -qarch=450d -qtune=450 -qmaxmem=-1
> -I/gpfs/home/jkumar/lib/petsc-hg/include
> -I/gpfs/home/jkumar/lib/petsc-hg/arch-bgp-ibm-opt/i\
> nclude -I/soft/apps/current/hdf5-1.8.9/include
> -I/bgsys/drivers/V1R4M2_200_2010-100508P/ppc/comm/default/include
> -I/bgsys/drivers/V1R4M2_200_2010-100508P/ppc/c\
> omm/sys/include   -I. -DMUALEM_SPLINE -DICE -o utility.o utility.F90
> bgxlf2003_r: 1501-214 (W) command option M reserved for future use -
> ignored
> "utility.F90", line 61.14: 1516-036 (S) Entity M1 has undefined type.
> "utility.F90", line 62.14: 1516-036 (S) Entity IA1 has undefined type.
> "utility.F90", line 63.14: 1516-036 (S) Entity IC1 has undefined type.
> "utility.F90", line 65.14: 1516-036 (S) Entity M2 has undefined type.
> "utility.F90", line 66.14: 1516-036 (S) Entity IA2 has undefined type.
> "utility.F90", line 67.14: 1516-036 (S) Entity IC2 has undefined type.
> "utility.F90", line 69.14: 1516-036 (S) Entity M3 has undefined type.
> "utility.F90", line 70.14: 1516-036 (S) Entity IA3 has undefined type.
> "utility.F90", line 71.14: 1516-036 (S) Entity IC3 has undefined type.
> "utility.F90", 1520-031 (W) Option DLINES is ignored within Fortran 90
> free form and IBM free form.
> ** Utility_module   === End of Compilation 1 ===
> 1501-511  Compilation failed for file utility.F90.
> <<<<<<
>
> On Mon, 29 Jul 2013, Jitendra Kumar wrote:
>
> > Satish,
> > By building my own zlib library specifying it through LIBS flag to PETSc
> > configure, I was able to compile PETSC-Dev with HDF5 support on Intrepid.
> > However, I ran into errors while building my application and it looks
> like
> > the XLF Fortran is using case sensitive settings and is failing due to
> > mixed uppercase/lowercase variable names in the code.
>
> Are you sure this is the problem? I can't reporduce it with a simple code..
>
>
> Satish
>
> --------
> [balay at vestalac1 junk]$ cat foo.F
>        program main
>        implicit none
>        integer i
>        I=5
>        write(*,*) I
>        end
> [balay at vestalac1 junk]$ mpixlf2003_r  foo.F
> ** main   === End of Compilation 1 ===
> 1501-510  Compilation successful for file foo.F.
> [balay at vestalac1 junk]$ ./a.out
>  5
>
>
> >
> > I have followed the
> >
> /soft/apps/libraries/petsc/3.3-p6/xl-opt/conf/reconfigure-arch-bgp-ibm-opt.py
> > and am not sure if there's something included or missing in the
> > configuration causing this. I believe default is for XLF to not to be
> case
> > sensitive, but I am not sure what do I have that's making it otherwise.
> >
> > I would appreciate if you can point me to anything I may be missing in my
> > configuration file. Attached are petsc configuration file and log of my
> > application compilation errors.
> >
> > Thanks,
> > Jitu
> >
> >
> >
> > On Tue, Jul 16, 2013 at 12:59 PM, Satish Balay <balay at mcs.anl.gov>
> wrote:
> >
> > > --download-package might not work on all machines. --download-hdf5=1
> does
> > > not work on bg/p
> > >
> > > However there is hdf5 installed on it. You can try using
> > > --with-hdf5-include/--with-hdf5-lib options.
> > >
> > > There could still be an issue with "Compression library [libz.a or
> > > equivalent] not found" but I think the workarround is already in
> > > petsc-dev.
> > >
> > > Satish
> > >
> > >
> > >
> > > On Tue, 16 Jul 2013, Jitendra Kumar wrote:
> > >
> > > > Thanks Satish. I tried using the configuration you pointed me to
> with the
> > > > addition of --download-hdf5=1 and got error "Compression library
> [libz.a
> > > or
> > > > equivalent] not found
> > > > "
> > > >
> > > > Do I need to load some package to get this?
> > > >
> > > > Jitu
> > > >
> > > >
> > > > On Tue, Jul 16, 2013 at 11:59 AM, Satish Balay <balay at mcs.anl.gov>
> > > wrote:
> > > >
> > > > > As the message indicates you need '--with-batch' option on this
> machine
> > > > >
> > > > > Check one of the default builds on intrepid for configure options
> to
> > > use..
> > > > >
> > > > > [perhaps
> > > > >
> > >
> /soft/apps/libraries/petsc/3.3-p6/xl-opt/conf/reconfigure-arch-bgp-ibm-opt.py]
> > > > >
> > > > > Satish
> > > > >
> > > > > On Tue, 16 Jul 2013, Jitendra Kumar wrote:
> > > > >
> > > > > > I ran into following errors while trying to build PETSc-dev on
> > > Intrepid
> > > > > > @ALCF.  (configure.log attached)
> > > > > >
> > > > > >
> > > > >
> > >
> *******************************************************************************
> > > > > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
> > > configure.log for
> > > > > > details):
> > > > > >
> > > > >
> > >
> -------------------------------------------------------------------------------
> > > > > > Cannot run executable to determine size of char. If this machine
> > > uses a
> > > > > > batch system
> > > > > > to submit jobs you will need to configure using ./configure with
> the
> > > > > > additional option  --with-batch.
> > > > > >  Otherwise there is problem with the compilers. Can you compile
> and
> > > run
> > > > > > code with your C/C++ (and maybe Fortran) compilers?
> > > > > >
> > > > >
> > >
> *******************************************************************************
> > > > > >   File "/gpfs/home/jkumar/lib/petsc/config/configure.py", line
> 293,
> > > in
> > > > > > petsc_configure
> > > > > >     framework.configure(out = sys.stdout)
> > > > > >   File
> > > > > >
> "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/framework.py",
> > > > > line
> > > > > > 933, in configure
> > > > > >     child.configure()
> > > > > >   File
> > > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > > line 386, in configure
> > > > > >     map(lambda type: self.executeTest(self.checkSizeof, type),
> > > > > > ['char','void *', 'short', 'int', 'long', 'long long', 'float',
> > > 'double',
> > > > > > 'size_t'])
> > > > > >   File
> > > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > > line 386, in <lambda>
> > > > > >     map(lambda type: self.executeTest(self.checkSizeof, type),
> > > > > > ['char','void *', 'short', 'int', 'long', 'long long', 'float',
> > > 'double',
> > > > > > 'size_t'])
> > > > > >   File
> > > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/base.py",
> > > > > > line 115, in executeTest
> > > > > >     ret = apply(test, args,kargs)
> > > > > >   File
> > > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > > line 296, in checkSizeof
> > > > > >     raise RuntimeError(msg)
> > > > > >
> > > > > > This is what my configuration looks like (adapted from
> > > > > > config/examples/arch-bgp-ibm-opt.py)
> > > > > > configure_options = [
> > > > > >   '--with-cc=mpixlc',
> > > > > >   '--with-fc=mpixlf90',
> > > > > >   '--with-cxx=mpixlcxx',
> > > > > >   'COPTFLAGS=-O3',
> > > > > >   'FOPTFLAGS=-O3',
> > > > > >   '--with-debugging=0',
> > > > > >   '--with-cmake=/soft/apps/fen/cmake-2.8.3/bin/cmake',
> > > > > > #  '--with-hdf5=/soft/apps/hdf5-1.8.0',
> > > > > >   '--download-parmetis=1',
> > > > > >   '--download-metis=1',
> > > > > >   '--download-plapack=1',
> > > > > >   '--download-hdf5=1'
> > > > > >   ]
> > > > > >
> > > > > > I would appreciate any help building the llbrary there.
> > > > > >
> > > > > > Thanks,
> > > > > > Jitu
> > > > > >
> > > > >
> > > > >
> > > >
> > >
> > >
> >
>
>
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