[petsc-users] installing petsc with scalapack from mkl

[Matthew Knepley]

On Wed, Jul 17, 2013 at 2:47 AM, Inge Gutheil <i.gutheil at fz-juelich.de>wrote:

> Hello,
> I tried this and got the following error:
>

1) Please do not send logs to petsc-users, send them to
petsc-maint at mcs.anl.gov

2) The logic is wrong here. We are requiring you to also specify an empty
--with-scalapack-include=[],
     which you should not have to. Please confirm that this works.

We will put a fix in the next patch update.

  Thanks,

     Matt


> ==============================**==============================**
> ====================
> TEST configureLibrary from
> PETSc.packages.scalapack(/**lustre/jhome5/software/**
> mathprod/PETSc/petsc-3.4.2/**config/BuildSystem/config/**package.py:464)
> TESTING: configureLibrary from
> PETSc.packages.scalapack(/**lustre/jhome5/software/**
> mathprod/PETSc/petsc-3.4.2/**config/BuildSystem/config/**package.py:464)
>   Find an installation and check if it can work with PETSc
> =============***************************************************
> **********************************
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> for details):
> ------------------------------**------------------------------**
> -------------------
> You must specify a path for scalapack with --with-scalapack-dir=<**
> directory>
> If you do not want scalapack, then give --with-scalapack=0
> You might also consider using --download-scalapack instead
> ****************************************************************
> *******************
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**config/configure.py",
> line
> 293, in petsc_configure
>     framework.configure(out = sys.stdout)
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**
> config/BuildSystem/config/**framework.py",
> line 933, in configure
>     child.configure()
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**
> config/BuildSystem/config/**package.py",
> line 556, in configure
>     self.executeTest(self.**configureLibrary)
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**
> config/BuildSystem/config/**base.py",
> line 115, in executeTest
>     ret = apply(test, args,kargs)
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**
> config/BuildSystem/config/**package.py",
> line 484, in configureLibrary
>     for location, directory, lib, incl in self.generateGuesses():
>   File
> "/lustre/jhome5/software/**mathprod/PETSc/petsc-3.4.2/**
> config/BuildSystem/config/**package.py",
> line 314, in generateGuesses
>     raise RuntimeError('You must specify a path for '+self.name+' with
> --with-'+self.package+'-dir=<**directory>\nIf you do not want
> '+self.name+', then give --with-'+self.package+'=0\nYou might also
> consider using --download-'+self.package+' instead')
> ==============================**==============================**=========
> See the attached complete configure.log
> This is on an intel cluster with intel compiler.
> Thanks
> Inge Gutheil
>
> On 07/16/13 17:27, Satish Balay wrote:
>
>> Try:
>>
>> --with-scalapack-lib="-L/opt/**intel/mkl//lib/intel64
>> -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
>>
>>
>> BLACS is now part of scalapack-2 [which petsc-3.4 uses] - but mkl has
>> blas/scalapack split.
>> So you would have to specify both libs with the --with-scalapack-lib
>> option.
>>
>> Satish
>>
>> On Tue, 16 Jul 2013, Michael Povolotskyi wrote:
>>
>>  Dear Petsc developers and users,
>>> I'm trying to configure petsc with scalapack from mkl library.
>>>
>>>  From the configure.log (see attached) it seems that when PETSc checks
>>> for the
>>> scalapack functionality it does not link blacs.
>>> Please advise.
>>> Thank you,
>>> Michael.
>>>
>>>
>>>
>
> --
> --
>
> Inge Gutheil
> Juelich Supercomputing Centre
> Institute for Advanced Simulation
> Forschungszentrum Juelich GmbH
> 52425 Juelich, Germany
>
>       Phone:   +49-2461-61-3135
>       Fax:     +49-2461-61-6656
>       E-mail:i.gutheil at fz-juelich.de
>
>
>
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