[petsc-users] compile petsc with intel compiler

[Matthew Knepley]

On Wed, Jul 10, 2013 at 12:00 AM, Michael Povolotskyi
<mpovolot at purdue.edu>wrote:

>  Hello everybody,
> unfortunately building petsc without fortran cannot work for me because I
> need MUMPs that requires Scalapack that needs fortran. I played with the
> options. As result the configuration runs okay, the build gives an error
> that does not seem to be related to fortran:
>

Quit building with CMake. It complicates everything. Use the legacy build.

   Matt


> [  0%] Building CXX object
> CMakeFiles/petscsys.dir/src/sys/totalview/tv_data_display.c.o
> Building Fortran object
> CMakeFiles/petscsys.dir/src/sys/f90-mod/petscsysmod.F.o
> Building CXX object CMakeFiles/petscsys.dir/src/sys/python/pythonsys.c.o
> [  0%] /usr/include/c++/4.7/bits/stl_algobase.h(60): catastrophic error:
> cannot open source file "bits/c++config.h"
>   #include <bits/c++config.h>
>                              ^
>
> /usr/include/c++/4.7/bits/stl_algobase.h(60): catastrophic error: cannot
> open source file "bits/c++config.h"
>   #include <bits/c++config.h>
>                              ^
>
> compilation aborted for
> /home/mpovolot/Code_intel/libs/petsc/build-real/src/sys/info/verboseinfo.c
> (code 4)
> compilation aborted for
> /home/mpovolot/Code_intel/libs/petsc/build-real/src/sys/logging/plog.c
> (code 4)
>
> I attach here the log files.
> Any advise is highly appreciated.
> Michael.
>
> On 7/9/2013 4:34 PM, Matthew Knepley wrote:
>
> On Tue, Jul 9, 2013 at 3:32 PM, Michael Povolotskyi <mpovolot at purdue.edu>wrote:
>
>> If I  do not need to use petsc in fortran programs, can I build petsc
>> without fortran and thus avoid this situation?
>> Michael.
>>
>>
>> On 07/09/2013 04:31 PM, Satish Balay wrote:
>>
>>> For some reason this issue comes up with mpi.mod provided by intel
>>> mpi.
>>>
>>> We have a configure test for it - but looks like its not sufficient to
>>> catch this issue.
>>>
>>> satish
>>>
>>>
>>> On Tue, 9 Jul 2013, Matthew Knepley wrote:
>>>
>>>  On Tue, Jul 9, 2013 at 3:11 PM, Michael Povolotskyi <
>>>> mpovolot at purdue.edu>wrote:
>>>>
>>>>  Dear Petsc users and developers,
>>>>> I'm trying to build petsc with Intel compiler.
>>>>>
>>>>>  1) First, ask yourself whether you really want to build with the Intel
>>>> compiler. Then ask again.
>>>>
>>>> 2) Do you need Fortran? If not, turn it off --with-fc=0.
>>>>
>>>               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>       Matt
>
>
>>  3) If you want Fortran and Intel (and have a hatred of free time), try
>>>> the
>>>> legacy build
>>>>
>>>>     make all-legacy
>>>>
>>>> 4) If this is still broken, send the new make.log
>>>>
>>>>    Thanks,
>>>>
>>>>      Matt
>>>>
>>>>
>>>>  The configuration process runs okay (I attach the log here),
>>>>> but I get an error when I build it:
>>>>> -- Configuring done
>>>>> -- Generating done
>>>>> -- Build files have been written to: /home/mpovolot/Code_intel/**
>>>>> libs/petsc/build-real/linux
>>>>> Scanning dependencies of target petscsys
>>>>> [  0%] [  0%] [  0%] Building CXX object CMakeFiles/petscsys.dir/src/**
>>>>> sys/info/verboseinfo.c.o
>>>>> Building Fortran object CMakeFiles/petscsys.dir/src/**
>>>>> sys/f90-mod/petscsysmod.F.o
>>>>> Building CXX object CMakeFiles/petscsys.dir/src/**
>>>>> sys/totalview/tv_data_display.**c.o
>>>>> Building CXX object
>>>>> CMakeFiles/petscsys.dir/src/**sys/python/pythonsys.c.o
>>>>> Building CXX object CMakeFiles/petscsys.dir/src/**sys/logging/plog.c.o
>>>>> /home/mpovolot/Code_intel/**libs/petsc/build-real/src/sys/**
>>>>> f90-mod/petscsysmod.F:6.11:
>>>>>
>>>>>          use mpi
>>>>>             1
>>>>> Fatal Error: File 'mpi.mod' opened at (1) is not a GFORTRAN module file
>>>>> make[6]: ***
>>>>> [CMakeFiles/petscsys.dir/src/**sys/f90-mod/petscsysmod.F.o]
>>>>> Error 1
>>>>> make[6]: *** Waiting for unfinished jobs....
>>>>> make[5]: *** [CMakeFiles/petscsys.dir/all] Error 2
>>>>> make[4]: *** [all] Error 2
>>>>> make[3]: *** [ccmake] Error 2
>>>>> make[2]: *** [cmake] Error 2
>>>>> ****************************ERROR**************************************
>>>>>    Error during compile, check linux/conf/make.log
>>>>>    Send it and linux/conf/configure.log to petsc-maint at mcs.anl.gov
>>>>>
>>>>> ************************************************************************
>>>>>
>>>>> I attach here the make.log
>>>>> What is strange to me that it has something to do with Gfortran, while
>>>>> I
>>>>> want to build everything with Intel.
>>>>> Thank you for help,
>>>>> Michael.
>>>>>
>>>>> --
>>>>> Michael Povolotskyi, PhD
>>>>> Research Assistant Professor
>>>>> Network for Computational Nanotechnology
>>>>> 207 S Martin Jischke Drive
>>>>> Purdue University, DLR, room 441-10
>>>>> West Lafayette, Indiana 47907
>>>>>
>>>>> phone: +1-765-494-9396
>>>>> fax: +1-765-496-6026
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>
>
>
>  --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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