[petsc-users] PetscSFReduceBegin does not work correctly on openmpi-1.4.3 with 64 integers

[fdkong]

>> Hi all,
>>
>> The function PetscSFReduceBegin runs well on MPICH, but does not work
>> on  openmpi-1.4.3, with 64 integers. Anyone knows why?
>>


>1) What error are you seeing? There are no errors in the build.


Yes, There are no errors in the build and configure. But when I ran my code involved the function PetscSFReduceBegin on supercomputer, I got the error below:


[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./linearElasticity on a arch-linu named node0353 by fako9399 Mon Sep 10 16:50:42 2012
[0]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib
[0]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012
[0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD 
with errorcode 59.


NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 1517 on
node node0353 exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------



I had done some debugs, and then found the error came from the function PetscSFReduceBegin.


>2) Please do not send logs to petsc-users, send them to
>petsc-maint at mcs.anl.gov


Ok, Thanks.


>  Matt




>> Maybe this link could help us guess why?
>> http://www.open-mpi.org/community/lists/devel/2005/11/0517.php
>>
>> I attached the configure.log and make.log files.
>> ------------------
>> Fande Kong
>> ShenZhen Institutes of Advanced Technology
>> Chinese Academy of Sciences
>>
>>
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