[petsc-users] Segmentation Fault in ts tutorial ex23

Milad Fatenejad icksa1 at gmail.com
Mon Nov 26 10:28:55 CST 2012


I was trying to run example ts/examples/tutorial/ex23 and I seem to get an
error similar to the one I've shown below no matter what options I use. For
the error below, I simply ran ex23 with no arguments. I've tried running
with the released petsc version and the development version from bitbucket.
Any suggestions?


[0]PETSC ERROR: --------------------- Error Message
[0]PETSC ERROR: Argument out of range!
[0]PETSC ERROR: New nonzero at (2,9) caused a malloc!
[0]PETSC ERROR: Petsc Development HG revision:
f86d5620e977ae10ba0f45b74b5f06746e16ab61  HG Date: Mon Nov 19 18:09:55 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ./ex23 on a arch-linu named animal5 by milad Mon Nov 26
10:12:42 2012
[0]PETSC ERROR: Libraries linked from
[0]PETSC ERROR: Configure run at Mon Nov 19 13:22:07 2012
[0]PETSC ERROR: Configure options --with-moab=1
--with-hdf5=1 --with-hdf5-dir=/usr/local/hdf5-1.8.8-parallel
--with-netcdf=1 --with-netcdf-dir=/usr/local/netcdf-4.1.3-serial
[0]PETSC ERROR: MatSetValues_SeqAIJ() line 353 in
[0]PETSC ERROR: MatSetValues() line 1080 in
[0]PETSC ERROR: MatSetValuesLocal() line 1941 in
[0]PETSC ERROR: SetUpMatrices() line 396 in src/ts/examples/tutorials/ex23.c
[0]PETSC ERROR: main() line 76 in src/ts/examples/tutorials/ex23.c
application called MPI_Abort(MPI_COMM_WORLD, 63) - process 0
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