[petsc-users] Question about Matrix Free
behzad baghapour
behzad.baghapour at gmail.com
Sun Jun 24 13:40:28 CDT 2012
Dear developers,
I want to define matrix operation used in SNES as Matrix-Free kernel. Here
is what I did:
MatCreateSNESMF( snes, &JMat );
MatCreateShell( PETSC_COMM_SELF, nt, nt, nt, nt, (void*)&FC, &JMat
);
MatShellSetOperation( JMat, MATOP_MULT,
(void(*)())&_petsc_matMultFree );
Where FC is my context which saves the flow field data. In the matrix-Free
kernel:
void solver::_petsc_matMultFree( Mat J, Vec x, Vec y )
{
MatShellGetContext( J, &FC );
// perturb the residual ( R -> R(x+eps) )
// do matrix-vector kernel as: y := Mx = Mass/dt + ( R2 - R1 ) / eps
}
But I received the error at first subspace creation in KSP:
[0]PETSC ERROR: MatMult() line 2177 in src/mat/interface/matrix.c
[0]PETSC ERROR: PCApplyBAorAB() line 610 in src/ksp/pc/interface/precon.c
[0]PETSC ERROR: GMREScycle() line 156 in src/ksp/ksp/impls/gmres/gmres.c
[0]PETSC ERROR: KSPSolve_GMRES() line 231 in src/ksp/ksp/impls/gmres/gmres.c
[0]PETSC ERROR: KSPSolve() line 423 in src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: SNES_KSPSolve() line 3396 in src/snes/interface/snes.c
[0]PETSC ERROR: SNESSolve_LS() line 190 in src/snes/impls/ls/ls.c
[0]PETSC ERROR: SNESSolve() line 2676 in src/snes/interface/snes.c
[0]PETSC ERROR: _petsc_NewtonTimeAdvance() line 151 in Newton.cpp
Would you please help me find my mistake ?
Thanks a lot,
BehZad
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