[petsc-users] pc_gamg_type geo broken in 3.3?
Blaise Bourdin
bourdin at lsu.edu
Tue Jul 24 21:59:40 CDT 2012
Hi,
is pc_gamg_type geo broken in petsc-3.3? I get the following when I make runex54 in src/ksp/ksp/examples/tutorials:
iMac:tutorials blaise$ make runex54
1,28c1,128
< 0 KSP Residual norm 132.598
< 1 KSP Residual norm 39.159
< 2 KSP Residual norm 15.7856
< 3 KSP Residual norm 8.91321
< 4 KSP Residual norm 6.95961
< 5 KSP Residual norm 15.1387
< 6 KSP Residual norm 12.5547
< 7 KSP Residual norm 3.78056
< 8 KSP Residual norm 2.38412
< 9 KSP Residual norm 3.91952
< 10 KSP Residual norm 1.3192
< 11 KSP Residual norm 1.70681
< 12 KSP Residual norm 1.74052
< 13 KSP Residual norm 0.482779
< 14 KSP Residual norm 0.634571
< 15 KSP Residual norm 0.264686
< 16 KSP Residual norm 0.240607
< 17 KSP Residual norm 0.10998
< 18 KSP Residual norm 0.0853072
< 19 KSP Residual norm 0.0551939
< 20 KSP Residual norm 0.0231032
< 21 KSP Residual norm 0.0286234
< 22 KSP Residual norm 0.0110345
< 23 KSP Residual norm 0.00582651
< 24 KSP Residual norm 0.00256534
< 25 KSP Residual norm 0.00176112
< 26 KSP Residual norm 0.000730267
< Linear solve converged due to CONVERGED_RTOL iterations 26
---
> [2]PETSC ERROR: ------------------------------------------------------------------------
> [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [2]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [0]PETSC ERROR: [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [1]PETSC ERROR: likely location of problem given in stack below
> [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [1]PETSC ERROR: INSTEAD the line number of the start of the function
> [1]PETSC ERROR: is given.
> [1]PETSC ERROR: [1] triangulateAndFormProl line 180 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [1]PETSC ERROR: [1] PCGAMGProlongator_GEO line 756 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [1]PETSC ERROR: [1] PCSetUp_GTry option -start_in_debugger or -on_error_attach_debugger
> [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [2]PETSC ERROR: likely location of problem given in stack below
> [2]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [2]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [2]PETSC ERROR: INSTEAD the line number of the start of the function
> [2]PETSC ERROR: is given.
> [2]PETSC ERROR: [2] triangulateAndFormProl line 180 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [2]PETSC ERROR: [2] PCGAMGProlongator_GEO line 756 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [2]PETSC ERROR: [2] PCSetUp_GAMG line 560 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/gamg.c
> [2]PETSC ERROR: [2] PCSetUp line 810 /opt/HPC/petsc-3.3/src/ksp/pc/interface/precon.c
> [2]PETSC ERROR: [2] KSPSetUp line 182 /opt/HPC/petsc-3.3/src/ksp[3]PETSC ERROR: ------------------------------------------------------------------------
> [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [3]PETSC ERROR: likely location of problem given in stack below
> [3]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [3]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [3]PETSC ERROR: INSTEAD the line number of the start of the function
> [3]PETSC ERROR: is given.
> [3]PETSC ERROR: [3] triangulateAndFormProl line 180 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [3]PETSC ERROR: [3] PCGAMGProlongator_GEO line 756 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [3]PETSC ERROR: [3] PCSetUp_Glikely location of problem given in stack below
> [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> [0]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] triangulateAndFormProl line 180 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [0]PETSC ERROR: [0] PCGAMGProlongator_GEO line 756 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/geo.c
> [0]PETSC ERROR: [0] PCSetUp_GAMG line 560 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/gamg.c
> [0]PETSC ERROR: [0] PCSetUp line 810 /opt/HPC/petsc-3.3/src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: [0] KSPSetUp line 182 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: [0] KSPSolve line 351 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR: ----------------AMG line 560 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/gamg.c
> [1]PETSC ERROR: [1] PCSetUp line 810 /opt/HPC/petsc-3.3/src/ksp/pc/interface/precon.c
> [1]PETSC ERROR: [1] KSPSetUp line 182 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [1]PETSC ERROR: [1] KSPSolve line 351 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [1]PETSC ERROR: --------------------- Error Message ------------------------------------
> [1]PETSC ERROR: Signal received!
> [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, unknown
> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [1]PETSC ERROR: See docs/index.html for manual pages.
> [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: ./ex54 on a Darwin-in named iMac.local by blaise Tue Jul 24 21:51:38 2012
> [1]PETSC ERROR: Libraries linked from /opt/HPC/petsc-3.3/Darwi/ksp/interface/itfunc.c
> [2]PETSC ERROR: [2] KSPSolve line 351 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [2]PETSC ERROR: --------------------- Error Message ------------------------------------
> [2]PETSC ERROR: Signal received!
> [2]PETSC ERROR: ------------------------------------------------------------------------
> [2]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, unknown
> [2]PETSC ERROR: See docs/changes/index.html for recent updates.
> [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [2]PETSC ERROR: See docs/index.html for manual pages.
> [2]PETSC ERROR: ------------------------------------------------------------------------
> [2]PETSC ERROR: ./ex54 on a Darwin-in named iMac.local by blaise Tue Jul 24 21:51:38 2012
> [2]PETSC ERROR: Libraries linked from /opt/HPC/petsc-3.3/Darwin-intel11.1-g/lib
> [2]PETSC ERROR: Configure run at Mon Jul 23 20:49:44 2012
> [2]PETSC ERROR: Configure options --download-hdf5=1 --download-metis=1 --download-parmetis=1 --download-sowing=1 --download-triangle=1 AMG line 560 /opt/HPC/petsc-3.3/src/ksp/pc/impls/gamg/gamg.c
> [3]PETSC ERROR: [3] PCSetUp line 810 /opt/HPC/petsc-3.3/src/ksp/pc/interface/precon.c
> [3]PETSC ERROR: [3] KSPSetUp line 182 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [3]PETSC ERROR: [3] KSPSolve line 351 /opt/HPC/petsc-3.3/src/ksp/ksp/interface/itfunc.c
> [3]PETSC ERROR: --------------------- Error Message ------------------------------------
> [3]PETSC ERROR: Signal received!
> [3]PETSC ERROR: ------------------------------------------------------------------------
> [3]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, unknown
> [3]PETSC ERROR: See docs/changes/index.html for recent updates.
> [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [3]PETSC ERROR: See docs/index.html for manual pages.
> [3]PETSC ERROR: ------------------------------------------------------------------------
> [3]PETSC ERROR: ./ex54 on a Darwin-in named iMac.local by blaise Tue Jul 24 21:51:38 2012
> [3]PETSC ERROR: Libraries linked from /opt/HPC/petsc-3.3/Darwi--------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, unknown
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex54 on a Darwin-in named iMac.local by blaise Tue Jul 24 21:51:38 2012
> [0]PETSC ERROR: Libraries linked from /opt/HPC/petsc-3.3/Darwin-intel11.1-g/lib
> [0]PETSC ERROR: Configure run at Mon Jul 23 20:49:44 2012
> [0]PETSC ERROR: Configure options --download-hdf5=1 --download-metis=1 --download-parmetis=1 --download-sowing=1 --download-triangle=1 --download-yaml=1 --with-blas-lapack-dir=/opt/intel/Compiler/11.1/091/Frameworks/mkl --with-cmake=cmake --with-debugging=1 --with-mpi-dir=/opt/HPC/mpich2-1.4.1p1-intel11.1 --with-pic --with-shared-libraries=1 --with-vendor-compilers=intel --with-x11=1 CFLAGS= CXXFLAn-intel11.1-g/lib
> [1]PETSC ERROR: Configure run at Mon Jul 23 20:49:44 2012
> [1]PETSC ERROR: Configure options --download-hdf5=1 --download-metis=1 --download-parmetis=1 --download-sowing=1 --download-triangle=1 --download-yaml=1 --with-blas-lapack-dir=/opt/intel/Compiler/11.1/091/Frameworks/mkl --with-cmake=cmake --with-debugging=1 --with-mpi-dir=/opt/HPC/mpich2-1.4.1p1-intel11.1 --with-pic --with-shared-libraries=1 --with-vendor-compilers=intel --with-x11=1 CFLAGS= CXXFLAGS= PETSC_ARCH=Darwin-intel11.1-g
> [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> [cli_1]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> --download-yaml=1 --with-blas-lapack-dir=/opt/intel/Compiler/11.1/091/Frameworks/mkl --with-cmake=cmake --with-debugging=1 --with-mpi-dir=/opt/HPC/mpich2-1.4.1p1-intel11.1 --with-pic --with-shared-libraries=1 --with-vendor-compilers=intel --with-x11=1 CFLAGS= CXXFLAGS= PETSC_ARCH=Darwin-intel11.1-g
> [2]PETSC ERROR: ------------------------------------------------------------------------
> [2]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2
> [cli_2]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2
> n-intel11.1-g/lib
> [3]PETSC ERROR: Configure run at Mon Jul 23 20:49:44 2012
> [3]PETSC ERROR: Configure options --download-hdf5=1 --download-metis=1 --download-parmetis=1 --download-sowing=1 --download-triangle=1 --download-yaml=1 --with-blas-lapack-dir=/opt/intel/Compiler/11.1/091/Frameworks/mkl --with-cmake=cmake --with-debugging=1 --with-mpi-dir=/opt/HPC/mpich2-1.4.1p1-intel11.1 --with-pic --with-shared-libraries=1 --with-vendor-compilers=intel --with-x11=1 CFLAGS= CXXFLAGS= PETSC_ARCH=Darwin-intel11.1-g
> [3]PETSC ERROR: ------------------------------------------------------------------------
> [3]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3
> [cli_3]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3
> GS= PETSC_ARCH=Darwin-intel11.1-g
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
/opt/HPC/petsc-3.3/src/ksp/ksp/examples/tutorials
Possible problem with with ex54_0, diffs above
=========================================
Also, I though there was a suggestion for the default parameters for GAMG for symmetric elliptic problems in the documentation or the FAQ, but I can't find it. Any suggestion?
Regards,
Blaise
--
Department of Mathematics and Center for Computation & Technology
Louisiana State University, Baton Rouge, LA 70803, USA
Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin
--
Department of Mathematics and Center for Computation & Technology
Louisiana State University, Baton Rouge, LA 70803, USA
Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin
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