[petsc-users] Compiling 3.3 for Open-MPI on a SLURM system

[Gunter, David O]

I am trying to compile PETSc on a SLURM-based system using GCC, openmpi-1.6.3.

Here's my configure line:

$ ./configure --prefix=/tmp/dog/petsc-3.3-p5 --with-mpiexec=mpiexec

configure bombs out on this test:

TESTING: configureMPITypes from config.packages.MPI(/usr/aprojects/hpctools/dog/petsc/petsc-3.3-p5/config/BuildSystem/config/packages/MPI.py:230)srun: error: slurm_send_recv_rc_msg_only_one: Connection timed out
srun: error: slurm_send_recv_rc_msg_only_one: Connection timed out

It should not be trying to srun anything as we use mpiexec with Open-MPI.  Any ideas?

-david

--
David Gunter
HPC-3: Infrastructure Team
Los Alamos National Laboratory